BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1134014 =	231 (1.210)	12 (0.080)	5/132	NT	6.6%	intergenic (+8/+54)	coaD/USA300HOU_RS05620	Phosphopantetheine adenylyltransferase/Nicotinamide‑nucleotide adenylyltransferase
*	?	USA300TCH1516_ALE	1134060 =	147 (0.940)	12 (0.080)	5/132	NT	6.6%	intergenic (+54/+8)	coaD/USA300HOU_RS05620	Phosphopantetheine adenylyltransferase/Nicotinamide‑nucleotide adenylyltransferase

Only 100 of 261 total aligned reads displayed.

TTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATATGTGTGTTGCTTTGA  >  USA300TCH1516_ALE/1133970‑1134150

   tGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCa                                                                                         <  1:794824/91‑1 (MQ=255)

      tGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCAttt                                                                                      >  1:278223/1‑91 (MQ=255)

       gAAAAGGCATTGAAGAAGAAATTTAAATAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTg                                                                                     >  2:2207636/1‑91 (MQ=255)

        aaaaGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGt                                                                                    <  1:3653735/91‑1 (MQ=255)

         aaaGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGtt                                                                                   >  2:3142320/1‑91 (MQ=255)

         aaaGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGtt                                                                                   >  1:1623041/1‑91 (MQ=255)

            ggCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAAc                                                                                <  1:757825/91‑1 (MQ=255)

            ggCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAAc                                                                                <  1:1972315/91‑1 (MQ=255)

             gCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACg                                                                               >  2:2557521/1‑91 (MQ=255)

             gCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACg                                                                               <  1:1021327/91‑1 (MQ=255)

              cATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGa                                                                              <  2:1819716/91‑1 (MQ=255)

              cATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGa                                                                              >  2:1261498/1‑91 (MQ=255)

              cATAGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGa                                                                              <  1:1558323/91‑1 (MQ=255)

               aTTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGat                                                                             >  1:3376928/1‑91 (MQ=255)

                ttGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGata                                                                            <  2:2226094/91‑1 (MQ=255)

                ttGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGata                                                                            <  2:2095247/91‑1 (MQ=255)

                ttGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGata                                                                            <  2:1890193/91‑1 (MQ=255)

                ttGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGata                                                                            >  2:1503288/1‑91 (MQ=255)

                ttGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGata                                                                            >  2:2890390/1‑91 (MQ=255)

                ttGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTATCATTTGTTAACGata                                                                            >  2:3717258/1‑91 (MQ=255)

                  gaagaagaaATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATAtt                                                                          >  2:3216370/1‑91 (MQ=255)

                    agaagaaATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGc                                                                        >  1:2688787/1‑91 (MQ=255)

                       agaaATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGt                                                                     <  1:3435918/91‑1 (MQ=255)

                          aaTTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATg                                                                  >  2:892250/1‑91 (MQ=255)

                           aTTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGa                                                                 <  2:2580684/91‑1 (MQ=255)

                            tttAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGAc                                                                <  1:2119837/91‑1 (MQ=255)

                             ttAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACa                                                               >  1:521423/1‑91 (MQ=255)

                              tAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAg                                                              >  1:681138/1‑91 (MQ=255)

                                aGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGc                                                            <  1:3781697/91‑1 (MQ=255)

                                  taataaAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCgt                                                          >  2:356846/1‑91 (MQ=255)

                                   aataaAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCgtg                                                         <  2:2651157/91‑1 (MQ=255)

                                   aataaAAATAACAGTATTTTAGATTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCgtg                                                         <  2:3131527/91‑1 (MQ=255)

                                      aaaaaTAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTg                                                      >  1:2163071/1‑91 (MQ=255)

                                       aaaaTAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGa                                                     <  1:3622102/91‑1 (MQ=255)

                                       aaaaTAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGa                                                     >  2:51753/1‑91 (MQ=255)

                                        tgaaaacagtattttaggattgtaaaccatgataaacctaaaatactgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGaa                                                    >  2:1112241‑M2/51‑91 (MQ=255)

                                        aaaTAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGaa                                                    <  2:1422381/91‑1 (MQ=255)

                                        aaaTAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGaa                                                    >  1:946021/1‑91 (MQ=255)

                                        aaaTAACAGTATTTTAGGTTTATCATGGCTTAGAATCCTAAAATACTGTTTTCCTTTGTTAACGATATTGCTGTATGACAGGCGTGTTGaa                                                    >  2:3812145/1‑91 (MQ=255)

                                         aaTAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGaaa                                                   <  2:2926242/91‑1 (MQ=255)

                                          aTAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAAt                                                  <  2:398810/91‑1 (MQ=255)

                                           tAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATc                                                 >  2:1104225/1‑91 (MQ=255)

                                             acagtattttaggattgtaaaccatgataaacctaaaatactgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCtg                                               >  2:1276625‑M2/46‑91 (MQ=255)

                                             ACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCtg                                               <  2:2756021‑M1/91‑1 (MQ=255)

                                             ACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCtg                                               <  2:2755838‑M1/91‑1 (MQ=255)

                                             ACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCtg                                               <  2:1594629‑M1/91‑1 (MQ=255)

                                                GTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCtgttt                                            <  2:3659547‑M1/91‑1 (MQ=255)

                                                GTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCtgttt                                            <  2:620954‑M1/91‑1 (MQ=255)

                                                   ttttaggattgtaaaccatgataaacctaaaatactgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCtgtttgtt                                         >  1:1955092‑M2/40‑91 (MQ=255)

                                                   ttttaggattgtaaaccatgataaacctaaaatactgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCtgtttgtt                                         >  1:3569815‑M2/40‑91 (MQ=255)

                                                   TTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCtgtttgtt                                         >  1:2627478‑M1/1‑91 (MQ=255)

                                                   TTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCtgtttgtt                                         >  1:1368424‑M1/1‑91 (MQ=255)

                                                    tttaggattgtaaaccatgataaacctaaaatactgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTttgttg                                        >  2:710512‑M2/39‑91 (MQ=255)

                                                        GGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGc                                    <  2:2015499‑M1/91‑1 (MQ=255)

                                                        GGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGc                                    >  1:187499‑M1/1‑91 (MQ=255)

                                                         GTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGcc                                   <  1:3523949‑M1/91‑1 (MQ=255)

                                                          tttATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGccc                                  >  1:248293/1‑91 (MQ=255)

                                                           ttATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCg                                 <  1:1489956/91‑1 (MQ=255)

                                                            tATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGc                                >  1:1444014/1‑91 (MQ=255)

                                                             aTCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCt                               <  1:3170118/91‑1 (MQ=255)

                                                             aTCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCt                               <  2:2703905/91‑1 (MQ=255)

                                                              tCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCtt                              >  2:2186140/1‑91 (MQ=255)

                                                              tCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCtt                              <  1:2901920/91‑1 (MQ=255)

                                                               cATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTa                             >  1:2072367/1‑91 (MQ=255)

                                                                aTGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTAt                            >  1:665219/1‑91 (MQ=255)

                                                                  ggTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTg                          >  2:2922640/1‑91 (MQ=255)

                                                                  ggTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTg                          >  1:1206914/1‑91 (MQ=255)

                                                                   gTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGc                         <  2:3343428/91‑1 (MQ=255)

                                                                   gTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGc                         <  2:2393989/91‑1 (MQ=255)

                                                                   gTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGc                         <  2:859666/91‑1 (MQ=255)

                                                                   gTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGc                         <  1:1757387/91‑1 (MQ=255)

                                                                    tttACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCa                        <  1:2986098/91‑1 (MQ=255)

                                                                       aCAATGCTAAAATACTGTTTTCATTTGTTAAGGATATTGCTGTATGTCGGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTg                     <  2:236082/91‑1 (MQ=255)

                                                                        cAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGt                    <  1:450893/91‑1 (MQ=255)

                                                                         aaTCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGta                   >  2:363774/1‑91 (MQ=255)

                                                                          aTCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGtat                  >  2:2497979/1‑91 (MQ=255)

                                                                           tCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGtata                 <  1:3884894/91‑1 (MQ=255)

                                                                            cctaaaatactgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTatat                >  2:3490837‑M2/15‑91 (MQ=255)

                                                                            cctaaaatactgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTatat                >  1:128489‑M2/15‑91 (MQ=255)

                                                                             ctaaaatactgttTTCATTTGTTAACGATATTGCTGTATGACAGCCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATAtg               <  1:3097474‑M2/78‑1 (MQ=255)

                                                                               aaaatactgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATAtgtg             <  1:91781‑M2/80‑1 (MQ=255)

                                                                               aaaatactgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATAtgtg             <  1:2817717‑M2/80‑1 (MQ=255)

                                                                               aaaatactgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATAtgtg             <  1:94765‑M2/80‑1 (MQ=255)

                                                                               aaaatactgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATAtgtg             <  1:2954387‑M2/80‑1 (MQ=255)

                                                                                aaatactgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATAtgtgt            >  2:1709917‑M2/11‑91 (MQ=255)

                                                                                aaatactgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATAtgtgt            >  1:1444631‑M2/11‑91 (MQ=255)

                                                                                 aatactgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATAtgtgtg           >  1:3366187‑M2/10‑91 (MQ=255)

                                                                                 aatactgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATAtgtgtg           >  1:1027646‑M2/10‑91 (MQ=255)

                                                                                  atactgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATATgtgtgt          <  1:2823396‑M2/83‑1 (MQ=255)

                                                                                   tactgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATATGTGTGtt         <  1:2517642‑M2/84‑1 (MQ=255)

                                                                                   tactgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATATGTGTGtt         <  1:2392347‑M2/84‑1 (MQ=255)

                                                                                      tgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATATGTGTGTTGCt      >  2:3251637‑M2/5‑91 (MQ=255)

                                                                                      tgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATATGTGTGTTGCt      >  2:1134711‑M2/5‑91 (MQ=255)

                                                                                      tgttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATATGTGTGTTGCt      >  2:3032664‑M2/5‑91 (MQ=255)

                                                                                        ttTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATATGTGTGTTGCttt    >  1:2305285‑M2/3‑91 (MQ=255)

                                                                                         tTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATATGTGTGTTGCTTTg   <  1:3204765‑M2/90‑1 (MQ=255)

                                                                                         tTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATATGTGTGTTGCTTTg   <  1:3204568‑M2/90‑1 (MQ=255)

                                                                                         tTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATATGTGTGTTGCTTTg   <  1:197708‑M2/90‑1 (MQ=255)

                                                                                         tTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATATGTGTGTTGCTTTg   <  2:811883‑M2/90‑1 (MQ=255)

                                                                                          ttCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATATGTGTGTTGCTTTGa  <  1:3142406/91‑1 (MQ=255)

TTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGTTTATCATGGTTTACAATCCTAAAATACTGTTTTCATTTGTTAACGATATTGCTGTATGACAGGCGTGTTGAAATCTGTTTGTTGTTGCCCGCTTATTGCATTGTATATGTGTGTTGCTTTGA  >  USA300TCH1516_ALE/1133970‑1134150

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.