New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 1355713 =213 (1.120)18 (0.110) 12/138 NT 9.9% intergenic (+3/+51) USA300HOU_RS06740/yclM hypothetical protein/Aspartokinase 3
?USA300TCH1516_ALE 1355761 = 143 (0.870)intergenic (+51/+3) USA300HOU_RS06740/yclM hypothetical protein/Aspartokinase 3

Only 100 of 278 total aligned reads displayed.

ATTAAGCTACTATCAATTTTTTATTTTAAAATTTGTAGTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGA  >  USA300TCH1516_ALE/1355623‑1355803
                                                                                          |                                                                                          
gtagatgatgctgaaaaagctgtattatctacatatgagttttgctatcacggggttgcattaaaaaacttgtgtgataaaaactaatata                                                                                            >  2:1592497‑M1/91‑91 (MQ=255)
 ttAAGCTACTATCAATTTTTTATTTTAAAATTTGTAGTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGaaa                                                                                           <  1:2970784/91‑1 (MQ=255)
   gatgatgctgaaaaagctgtattatctacatatgagttttgctatcacggggttgcattaaaaaacttgtgtgataaaaactaatataaaa                                                                                         <  2:1917345‑M1/4‑1 (MQ=255)
   aaGCTACTATCAATTTTTTATTTTAAAATTTGTAGTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGaaaaa                                                                                         <  2:3665779/91‑1 (MQ=255)
   aaGCTACTATCAATTTTTTATTTTAAAATTTGTAGTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGaaaaa                                                                                         >  1:2247466/1‑91 (MQ=255)
   aaGCTACTATCAATTTTTTATTTTAAAATTTGTAGTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGaaaaa                                                                                         >  2:1695735/1‑91 (MQ=255)
     tgatgctgaaaaagctgtattatctacatatgagttttgctatcacggggttgcattaaaaaacttgtgtgataaaaactaatatAAAAGc                                                                                       >  1:2381563‑M1/86‑91 (MQ=255)
     tgatgctgaaaaagctgtattatctacatatgagttttgctatcacggggttgcattaaaaaacttgtgtgataaaaactaatatAAAAGc                                                                                       <  2:3236054‑M1/6‑1 (MQ=255)
      gatgctgaaaaagctgtattatctacatatgagttttgctatcacggggttgcattaaaaaacttgtgtgataaaaactaatatAAAAGCa                                                                                      >  2:2783808‑M1/85‑91 (MQ=255)
       tactaTCAATTTTTTATTTTAAAATTTGTAGTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCat                                                                                     <  2:834261/91‑2 (MQ=255)
       tactaTCAATTTTTTATTTTAAAATTTGTAGTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCaa                                                                                     <  2:1521952/91‑1 (MQ=255)
       tactaTCAATTTTTTATTTTAAAATTTGTAGTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCaa                                                                                     >  1:2610960/1‑91 (MQ=255)
       tactaTCAATTTTTTATTTTAAAATTTGTAGTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCaa                                                                                     <  1:2419958/91‑1 (MQ=255)
         gctgaaaaagctgtattatctacatatgagttttgctatcacggggttgcattaaaaaacttgtgtgataaaaactaatatAAAAGCAAtt                                                                                   <  1:1645056‑M1/10‑1 (MQ=255)
         gctgaaaaagctgtattatctacatatgagttttgctatcacggggttgcattaaaaaacttgtgtgataaaaactaatatAAAAGCAAtt                                                                                   <  2:2583305‑M1/10‑1 (MQ=255)
         gctgaaaaagctgtattatctacatatgagttttgctatcacggggttgcattaaaaaacttgtgtgataaaaactaatatAAAAGCAAtt                                                                                   <  1:2063592‑M1/10‑1 (MQ=255)
         ctaTCAATTTTTTATTTTAAAATTTGTAGTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAAtt                                                                                   <  2:1412037/91‑1 (MQ=255)
          ctgaaaaagctgtattatctacatatgagttttgctatcacggggttgcattaaaaaacttgtgtgataaaaactaatatAAAAGCAATTc                                                                                  <  2:1320111‑M1/11‑1 (MQ=255)
            tCAATTTTTTATTTTAAAATTTGTAGTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACACTAAATAATTAAGAAAAAGCAATTCAt                                                                                <  2:3215417/91‑1 (MQ=255)
            tCAATTTTTTATTTTAAAATTTGTAGTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCAt                                                                                <  1:710710/91‑1 (MQ=255)
            tCAATTTTTTATTTTAAAATTTGTAGTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCAt                                                                                <  1:2580777/91‑1 (MQ=255)
             cAATTTTTTATTTTAAAATTTGTAGTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATa                                                                               <  2:741139/91‑1 (MQ=255)
                 tttttATTTTAAAATTTGTAGTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGc                                                                           <  2:3771197/91‑1 (MQ=255)
                 tttttATTTTAAAATTTGTAGTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGc                                                                           <  1:368466/91‑1 (MQ=255)
                 tttttATTTTAAAATTTGTAGTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGc                                                                           <  2:678516/91‑1 (MQ=255)
                 tttttATTTTAAAATTTGTAGTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGc                                                                           <  2:1341363/91‑1 (MQ=255)
                    ttattttaAAATTTGTAGTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGt                                                                        >  1:3028026/1‑91 (MQ=255)
                    ttattttaAAATTTGTAGTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGt                                                                        <  1:1076434/91‑1 (MQ=255)
                    ttattttaAAATTTGTAGTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGt                                                                        <  1:1265835/91‑1 (MQ=255)
                     tattttaAAATTTGTAGTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGtt                                                                       >  1:3544263/1‑91 (MQ=255)
                     gtattatctacatatgagttttgctatcacggggttgcattaaaaaacttgtgtgataaaaactaatatAAAAGCAATTCATAACGCAGtt                                                                       <  1:271477‑M1/22‑1 (MQ=255)
                       ttttaAAATTTGTAGTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGa                                                                     >  1:1702760/1‑91 (MQ=255)
                       ttttaAAATTTGTAGTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGa                                                                     >  1:2339709/1‑91 (MQ=255)
                       attatctacatatgagttttgctatcacggggttgcattaaaaaacttgtgtgataaaaactaatatAAAAGCAATTCATAACGCAGTTGa                                                                     <  2:1837510‑M1/24‑1 (MQ=255)
                           aaaaTTTGTAGTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATAc                                                                 <  1:1374534/91‑1 (MQ=255)
                            aaaTTTGTAGTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGTAGTTGAATACa                                                                >  1:3516230/1‑91 (MQ=255)
                              aTTTGTAGTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACAtg                                                              >  1:1793863/1‑91 (MQ=255)
                                ttGTAGTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACAtgtg                                                            >  1:1113512/1‑91 (MQ=255)
                                ttGTAGTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACAtgtg                                                            <  1:2670475/91‑1 (MQ=255)
                                atatgagttttgctatcacggggttgcattaaaaaacttgtgtgataaaaactaatatAAAAGCAATTCATAACGCAGTTGAATACAtgtg                                                            >  1:2721864‑M1/59‑91 (MQ=255)
                                 tGTAGTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATgtgt                                                           <  2:2082637/91‑1 (MQ=255)
                                  gtagtaGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGtt                                                          >  2:3051149/1‑91 (MQ=255)
                                    agtagGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTAc                                                        <  1:168773/91‑1 (MQ=255)
                                    agtagGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTAc                                                        <  2:2247466/91‑1 (MQ=255)
                                    agtagGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTAc                                                        <  1:2771673/91‑1 (MQ=255)
                                     gtagGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACg                                                       >  2:3435802/1‑91 (MQ=255)
                                      tagGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGa                                                      <  1:547053/91‑1 (MQ=255)
                                      tagGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGa                                                      <  1:2784575/91‑1 (MQ=255)
                                      gttttgctatcacggggttgcattaaaaaacttgtgtgataaaaactaatatAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGa                                                      >  2:2103982‑M1/53‑91 (MQ=255)
                                       agGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGaa                                                     >  1:2847905/1‑91 (MQ=255)
                                          tGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTg                                                  <  1:69399/91‑1 (MQ=255)
                                               aaCGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCtttt                                             <  2:2165138/91‑1 (MQ=255)
                                                aCGTATTAAGGAGGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTta                                            <  1:1546027/91‑1 (MQ=255)
                                                 acggggttgcattaaaaaacttgtgtgataaaaactaatatAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTtat                                           >  1:2584088‑M1/42‑91 (MQ=255)
                                                  gTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTtata                                          <  2:3143352/91‑1 (MQ=255)
                                                  gTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTtata                                          >  1:855690/1‑91 (MQ=255)
                                                   tATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTatat                                         <  1:1334759/91‑1 (MQ=255)
                                                    gggttgcattaaaaaacttgtgtgataaaaactaatatAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATAtt                                        >  1:2172795‑M1/39‑91 (MQ=255)
                                                     ttAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTa                                       >  2:3877177/1‑91 (MQ=255)
                                                        aGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACAtg                                                              <  2:574213/65‑1 (MQ=255)
                                                        aGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGtt                                    <  2:1092502/91‑1 (MQ=255)
                                                        aGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGtt                                    <  2:2194950/91‑1 (MQ=255)
                                                         ggATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGttt                                   >  1:945728/1‑91 (MQ=255)
                                                         ggATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGttt                                   <  1:625553/91‑1 (MQ=255)
                                                           attaaaaaacttgtgtgataaaaactaatatAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGttttt                                 >  2:271477‑M1/32‑91 (MQ=255)
                                                            tGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTa                                >  1:369712/1‑91 (MQ=255)
                                                             gCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTCTTATATTAGTTTTTAt                               >  2:2973801/1‑91 (MQ=255)
                                                              cAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATc                              <  2:1126664/91‑1 (MQ=255)
                                                                aTCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATcac                            <  2:948426/91‑1 (MQ=255)
                                                                aTCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATcac                            >  2:2007313/1‑91 (MQ=255)
                                                                aTCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATcac                            >  1:2097343/1‑91 (MQ=255)
                                                                aTCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATcac                            >  1:753274/1‑91 (MQ=255)
                                                                aTCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATcac                            >  1:754534/1‑91 (MQ=255)
                                                                 tCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATcaca                           <  2:1034088/91‑1 (MQ=255)
                                                                 tCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCAAAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATcaca                           >  1:3272802/1‑91 (MQ=255)
                                                                  ccAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATcacac                          <  1:378893/91‑1 (MQ=255)
                                                                   cAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATcacaca                         >  1:1897867/1‑91 (MQ=255)
                                                                   cAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATcacaca                         >  1:1925102/1‑91 (MQ=255)
                                                                   cAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATcacaca                         <  2:2729867/91‑1 (MQ=255)
                                                                   cAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATcacaca                         >  1:3752281/1‑91 (MQ=255)
                                                                    agagAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACaa                        <  1:887859/91‑1 (MQ=255)
                                                                      agaACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGt                      <  1:280879/91‑1 (MQ=255)
                                                                       gaACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGtt                     <  2:229964/91‑1 (MQ=255)
                                                                       gaACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGtt                     <  2:2768666/91‑1 (MQ=255)
                                                                        aaCAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGttt                    >  1:960836/1‑91 (MQ=255)
                                                                        aaCAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTATATATCACACAAGatt                    >  2:3320510/1‑91 (MQ=255)
                                                                          cAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGttttt                  <  1:1002114/91‑1 (MQ=255)
                                                                          cAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGttttt                  >  1:3325895/1‑91 (MQ=255)
                                                                           aataaataATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGtttttt                 <  2:37175/91‑1 (MQ=255)
                                                                            ataaataaTTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTa                >  2:2414345/1‑91 (MQ=255)
                                                                             taaataaTTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTCACGAATTGCTTTTATATTAGTTTTTATCATACAAGTTTTTTaa               >  1:3879831/1‑91 (MQ=255)
                                                                               aataatTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATg             >  2:2804753/1‑91 (MQ=255)
                                                                               aataatTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATg             >  2:2697368/1‑91 (MQ=255)
                                                                                 taatTAAGAAAAAGCAATTCATAACGCATTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCa           <  1:312032/91‑1 (MQ=255)
                                                                                 taatTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCa           <  2:3503335/91‑1 (MQ=255)
                                                                                  aatTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCaa          <  1:579570/91‑1 (MQ=255)
                                                                                   atTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAAc         >  1:1320224/1‑91 (MQ=255)
                                                                                    ttAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAAcc        <  1:188387/91‑1 (MQ=255)
                                                                                     tAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAAccc       <  1:1505445/91‑1 (MQ=255)
                                                                                         tAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTg   >  2:1316006‑M1/2‑91 (MQ=255)
                                                                                          |                                                                                          
ATTAAGCTACTATCAATTTTTTATTTTAAAATTTGTAGTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGA  >  USA300TCH1516_ALE/1355623‑1355803

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.