BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1366496	163 (0.860)	12 (0.070)	7/152	NT	6.8%	intergenic (+72/‑85)	rpsN2/guaC	Alternate 30S ribosomal protein S14/GMP reductase
*	?	USA300TCH1516_ALE	= 1366530	175 (0.970)	12 (0.070)	7/152	NT	6.8%	intergenic (+106/‑51)	rpsN2/guaC	Alternate 30S ribosomal protein S14/GMP reductase

Only 100 of 260 total aligned reads displayed.

AAAAAATCAAGTTGGTAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAA  >  USA300TCH1516_ALE/1366407‑1366586

aaaaaaTCAAGTTGGTAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACt                                                                                            <  1:3247235/91‑1 (MQ=255)

 ataaaTCAAGTTGTTAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTg                                                                                           <  2:1685533/89‑1 (MQ=255)

 aaaaaTCAAGTTGGTAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTg                                                                                           >  2:2381026/1‑91 (MQ=255)

    aaTCAAGTTGGTAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAAt                                                                                        >  2:1072915/1‑91 (MQ=255)

     aTCAAGTTGGTAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATg                                                                                       <  1:852374/91‑1 (MQ=255)

      tCAAGTTGGTAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGt                                                                                      <  2:1414239/91‑1 (MQ=255)

       cAAGTTGGTAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGtt                                                                                     <  2:376315/91‑1 (MQ=255)

        aaGTTGGTAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGttt                                                                                    <  2:2583959/91‑1 (MQ=255)

         aGTTGGTAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGtttt                                                                                   >  2:2466763/1‑91 (MQ=255)

         aGTTGGTAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGtttt                                                                                   >  1:2315997/1‑91 (MQ=255)

          gTTGGTAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTtc                                                                                  >  1:3761880/1‑91 (MQ=255)

          gTTGGTAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTtc                                                                                  >  1:1470559/1‑91 (MQ=255)

          gTTGGTAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTtc                                                                                  >  1:196671/1‑91 (MQ=255)

            tGGTAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTtctc                                                                                <  1:3782612/91‑1 (MQ=255)

             ggTAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCa                                                                               <  1:3833973/91‑1 (MQ=255)

               tAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCata                                                                             <  2:3118475/91‑1 (MQ=255)

                aaaaTCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCatat                                                                            >  2:1133536/1‑91 (MQ=255)

                   aTCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATtaa                                                                         <  1:2357535/91‑1 (MQ=255)

                     cAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATtaata                                                                       <  2:2012153/91‑1 (MQ=255)

                      aaaTTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATtaataa                                                                      <  2:3290452/91‑1 (MQ=255)

                      aaaTTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATtaataa                                                                      >  1:911849/1‑91 (MQ=255)

                      aaaTTTCGTACTTTAGCCCATCTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATACtaataa                                                                      >  2:2259153/1‑91 (MQ=255)

                         tttCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGa                                                                   >  2:506152/1‑91 (MQ=255)

                         tttCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGa                                                                   <  2:2338567/91‑1 (MQ=255)

                          ttCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGaa                                                                  >  2:1819348/1‑91 (MQ=255)

                          ttCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGaa                                                                  >  1:1406361/1‑91 (MQ=255)

                           tCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGaaa                                                                 <  1:1849497/91‑1 (MQ=255)

                           tCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGaaa                                                                 >  2:725369/1‑91 (MQ=255)

                           tCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGaaa                                                                 <  2:2777477/91‑1 (MQ=255)

                            cGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAAc                                                                <  2:2298588/91‑1 (MQ=255)

                            cGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAAc                                                                <  1:2541715/91‑1 (MQ=255)

                            cGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAAc                                                                >  2:2060983/1‑91 (MQ=255)

                            cGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAAc                                                                >  2:3451852/1‑91 (MQ=255)

                               aCTTTAGCTCATTTACAATATCAATCAAACAATGTACAGTATATACGAATGCTATAAACTGTATGTTTTCTCATATTAATAAGGAAACAtt                                                             <  2:3370495/91‑1 (MQ=255)

                                cTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACtgaatgtttccttattaatatgagaaaacattc                                                            <  2:2873476‑M1/91‑34 (MQ=255)

                                cTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTc                                                            <  1:3270836/91‑1 (MQ=255)

                                  ttAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACtgaatgtttccttattaatatgagaaaacattcag                                                          <  1:1298338‑M1/91‑36 (MQ=255)

                                   tAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACcgaatgtttccttattaatatgagaaaacattcagt                                                         <  1:2240894‑M1/91‑37 (MQ=255)

                                   tAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGgt                                                         >  1:263604‑M2/1‑89 (MQ=255)

                                   tAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGgt                                                         >  1:2280141‑M2/1‑89 (MQ=255)

                                    aGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACcgaatgtttccttattaatatgagaaaacattcagtt                                                        <  2:3173908‑M1/91‑38 (MQ=255)

                                    aGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGgtt                                                        >  1:3477472‑M2/1‑88 (MQ=255)

                                     gCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAGACTGAATGTTTTCTCATATTAATAAGGAAACATTCGgttt                                                       >  2:3183430‑M2/1‑87 (MQ=255)

                                     gCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACcgaatgtttccttattaatatgagaaaacattcagttt                                                       <  1:908794‑M1/91‑39 (MQ=255)

                                     gCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGgttt                                                       <  2:152761‑M2/91‑5 (MQ=255)

                                     gCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGgttt                                                       <  2:1611982‑M2/91‑5 (MQ=255)

                                     gCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGgttt                                                       >  2:2873916‑M2/1‑87 (MQ=255)

                                     gCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGgttt                                                       >  2:2297301‑M2/1‑87 (MQ=255)

                                     gCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGgttt                                                       >  2:3638061‑M2/1‑87 (MQ=255)

                                      cccATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGtttt                                                      >  1:801374/1‑91 (MQ=255)

                                      cccATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGtttt                                                      <  1:2340072/91‑1 (MQ=255)

                                      cccATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGtttt                                                      <  1:2908796/91‑1 (MQ=255)

                                       ccATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGttttt                                                     <  1:1668242/91‑1 (MQ=255)

                                       ccATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGttttt                                                     <  1:2430861/91‑1 (MQ=255)

                                         aTTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTaa                                                   <  2:3876476/91‑1 (MQ=255)

                                           ttACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAAtt                                                 <  2:1549307/91‑1 (MQ=255)

                                             aCAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTg                                               <  2:2896585/91‑1 (MQ=255)

                                             aCAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTg                                               >  1:857581/1‑91 (MQ=255)

                                             aCAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTg                                               <  1:2484166/91‑1 (MQ=255)

                                              cAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGc                                              <  2:2680749/91‑1 (MQ=255)

                                                 tatCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCAtt                                           <  1:3590218/91‑1 (MQ=255)

                                                 tatCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCAtt                                           <  1:1611982/91‑1 (MQ=255)

                                                  atCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCAttt                                          >  1:1265151/1‑91 (MQ=255)

                                                    cAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTaa                                        <  1:2047351/91‑1 (MQ=255)

                                                        aaaaCAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAaa‑t                                   <  1:3485088/91‑1 (MQ=255)

                                                         aaaCAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAaa‑ta                                  <  2:2055504/91‑1 (MQ=255)

                                                           aCAATGTACAGTATATACGAATGAAATAAACTGAATGTTTTCTGATATTAATAACGAAACATTCGGTTTTTAATTTGCATTTAGAaa‑taat                                <  2:3615515/91‑1 (MQ=255)

                                                             aaTGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTa                              >  1:570334/1‑91 (MQ=255)

                                                              aTGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAg                             <  2:121907/91‑1 (MQ=255)

                                                              aTGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAg                             <  1:1702523/91‑1 (MQ=255)

                                                              aTGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAg                             >  1:1448914/1‑91 (MQ=255)

                                                               tGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGt                            <  2:3408226/91‑1 (MQ=255)

                                                                  aCAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGtttt                         >  1:3157132/1‑91 (MQ=255)

                                                                  aCAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGtttt                         >  1:1078399/1‑91 (MQ=255)

                                                                    aGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAACTAATTA‑TTTTTa                       <  2:3009662/91‑1 (MQ=255)

                                                                    aGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTa                       <  1:2060983/91‑1 (MQ=255)

                                                                      tatataCGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAACTAATTA‑TTTTTaaa                     <  2:2670780/91‑1 (MQ=255)

                                                                          taCGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAgggg                 <  1:1819348/91‑1 (MQ=255)

                                                                           aCGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGc                <  1:1168475/91‑1 (MQ=255)

                                                                           aCGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGc                <  2:1950636/91‑1 (MQ=255)

                                                                           aCGAATGCTATAAACTGAATGTGTTCTCATATTAATAAGGAAACATTCGTTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGc                <  2:2949675/91‑1 (MQ=255)

                                                                            cGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGcc               >  2:785323/1‑90 (MQ=255)

                                                                            cGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCt               <  2:128911/91‑1 (MQ=255)

                                                                            cGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCt               >  1:2264456/1‑91 (MQ=255)

                                                                               aTGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTAtt            >  1:3855565/1‑91 (MQ=255)

                                                                                  cTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTaa         >  1:1878963/1‑91 (MQ=255)

                                                                                    ataAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAg       >  1:1535349/1‑91 (MQ=255)

                                                                                     taAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCCTTTAAAAA‑TAAATAGTTTTTAAAGGGGCTATTTTAAGt      >  2:2367660/1‑91 (MQ=255)

                                                                                     taAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGt      >  2:687094/1‑91 (MQ=255)

                                                                                     taAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGt      <  1:3538735/91‑1 (MQ=255)

                                                                                     taAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGt      >  2:547923/1‑91 (MQ=255)

                                                                                      aaaCcgaatgtttccttattaatatgagaaaacattcagtttatagcattcgtatatactgtacattgttttattgatattgtaaatgggc      >  2:2297715‑M1/1‑4 (MQ=255)

                                                                                      aaaCcgaatgtttccttattaatatgagaaaacattcagtttatagcattcgtatatactgtacattgttttattgatattgtaaatgggc      >  1:281223‑M1/1‑4 (MQ=255)

                                                                                      aaaCTGAATGTTTTCTCATATTAATAAGGAAACATTCGgtttatagcattcgtatatactgtacattgttttattgatattgtaaatgggc      <  1:3332276‑M2/91‑54 (MQ=255)

                                                                                       aaCTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGa    <  2:559936/91‑1 (MQ=255)

                                                                                       aaCTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGa    >  2:2160765/1‑91 (MQ=255)

                                                                                        aCTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAATAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGaa   <  1:722101/91‑1 (MQ=255)

                                                                                        aCTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGaa   <  1:3348812/91‑1 (MQ=255)

                                                                                         ccgaatgtttccttattaatatgagaaaacattcagtttatagcattcgtatatactgtacattgttttattgatattgtaaatgggctaa   >  2:3063112‑M1/1‑1 (MQ=255)

                                                                                         ccgaatgtttccttattaatatgagaaaacattcagtttatagcattcgtatatactgtacattgttttattgatattgtaaatgggctaa   <  2:1325041‑M1/91‑91 (MQ=255)

AAAAAATCAAGTTGGTAAAATCAAATTTCGTACTTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAA‑TAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAA  >  USA300TCH1516_ALE/1366407‑1366586

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.