BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1366496	163 (0.860)	12 (0.070)	7/152	NT	6.8%	intergenic (+72/‑85)	rpsN2/guaC	Alternate 30S ribosomal protein S14/GMP reductase
*	?	USA300TCH1516_ALE	= 1366530	175 (0.970)	12 (0.070)	7/152	NT	6.8%	intergenic (+106/‑51)	rpsN2/guaC	Alternate 30S ribosomal protein S14/GMP reductase

Only 100 of 226 total aligned reads displayed.

TTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAGATATTCAATTAATACCTA  >  USA300TCH1516_ALE/1366440‑1366620

 ttAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGg                                                                                           <  2:1325041‑M2/91‑2 (MQ=255)

  tAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGgt                                                                                          >  1:2280703‑M2/1‑89 (MQ=255)

   aGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGgtt                                                                                         >  1:3477512‑M2/1‑88 (MQ=255)

   aGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGgtt                                                                                         >  2:1083858‑M2/1‑88 (MQ=255)

    gCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAGACTGAATGTTTTCTCATATTAATAAGGAAACATTCGgttt                                                                                        >  2:3183430‑M2/1‑87 (MQ=255)

    gCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGgttt                                                                                        >  2:2297301‑M2/1‑87 (MQ=255)

    gCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGgttt                                                                                        <  2:1611982‑M2/91‑5 (MQ=255)

    gCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGgttt                                                                                        >  2:2297715‑M2/1‑87 (MQ=255)

    gCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGgttt                                                                                        >  2:2873916‑M2/1‑87 (MQ=255)

    gCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGgttt                                                                                        >  1:281223‑M2/1‑87 (MQ=255)

    gCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGgttt                                                                                        >  2:3638061‑M2/1‑87 (MQ=255)

     cccATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGtttt                                                                                       >  1:801374/1‑91 (MQ=255)

      ccATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGttttt                                                                                      <  1:2430861/91‑1 (MQ=255)

        aTTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTaa                                                                                    <  2:3876476/91‑1 (MQ=255)

            aCAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTg                                                                                >  1:857581/1‑91 (MQ=255)

             cAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGc                                                                               <  2:2680749/91‑1 (MQ=255)

             cAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGc                                                                               <  2:2677773/91‑1 (MQ=255)

             cAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGc                                                                               <  2:1391965/91‑1 (MQ=255)

                tatCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCAtt                                                                            <  2:1527319/91‑1 (MQ=255)

                        aaaCAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAaata                                                                    <  2:2055504/91‑1 (MQ=255)

                          aCAATGTACAGTATATACGAATGAAATAAACTGAATGTTTTCTGATATTAATAACGAAACATTCGGTTTTTAATTTGCATTTAGAaataat                                                                  <  2:3615515/91‑1 (MQ=255)

                            aaTGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTa                                                                >  1:570334/1‑91 (MQ=255)

                             aTGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAg                                                               <  2:2908280/91‑1 (MQ=255)

                             aTGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAg                                                               >  1:1448914/1‑91 (MQ=255)

                             aTGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAg                                                               <  2:121982/91‑1 (MQ=255)

                             aTGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAg                                                               >  2:2231180/1‑91 (MQ=255)

                             aTGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAg                                                               >  1:1630460/1‑91 (MQ=255)

                             aTGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAg                                                               <  1:1702489/91‑1 (MQ=255)

                               gTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGtt                                                             >  1:1471788/1‑91 (MQ=255)

                                tACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGttt                                                            <  2:632304/91‑1 (MQ=255)

                                 aCAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGtttt                                                           >  1:3157132/1‑91 (MQ=255)

                                   aGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTa                                                         >  2:872900/1‑91 (MQ=255)

                                    gTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTaa                                                        >  2:154031/1‑91 (MQ=255)

                                      atataCGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAg                                                      <  1:2461441/91‑1 (MQ=255)

                                      atataCGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAg                                                      <  2:3155905/91‑1 (MQ=255)

                                          aCGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGc                                                  >  1:2343783/1‑91 (MQ=255)

                                          aCGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGc                                                  <  1:1168475/91‑1 (MQ=255)

                                          aCGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGc                                                  <  2:1950636/91‑1 (MQ=255)

                                          aCGAATGCTATAAACTGAATGTGTTCTCATATTAATAAGGAAACATTCGTTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGc                                                  <  2:2949675/91‑1 (MQ=255)

                                           cGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGcc                                                 >  2:785323/1‑90 (MQ=255)

                                           cGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCt                                                 <  2:128911/91‑1 (MQ=255)

                                             aaTGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTAt                                               <  1:2720960/91‑1 (MQ=255)

                                             aaTGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTAt                                               <  1:3699994/91‑1 (MQ=255)

                                              aTGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTAtt                                              <  1:3795063/91‑1 (MQ=255)

                                              aTGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTAtt                                              >  1:3855565/1‑91 (MQ=255)

                                                 cTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTaa                                           >  1:1879748/1‑91 (MQ=255)

                                                  tataAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGgtttatagcattcgtatatactgtacattgttttattgatattgtaaatg                                          <  2:20658‑M2/91‑51 (MQ=255)

                                                   ataAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAg                                         >  1:1535349/1‑91 (MQ=255)

                                                    taAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGt                                        >  2:547923/1‑91 (MQ=255)

                                                    taAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGt                                        >  1:3588133/1‑91 (MQ=255)

                                                    taAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGt                                        >  2:687378/1‑91 (MQ=255)

                                                    taAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGt                                        <  1:2011792/91‑1 (MQ=255)

                                                     aaaCTGAATGTTTTCTCATATTAATAAGGAAACATTCGgtttatagcattcgtatatactgtacattgttttattgatattgtaaatgggc                                       <  1:908794‑M2/91‑54 (MQ=255)

                                                     aaaCTGAATGTTTTCTCATATTAATAAGGAAACATTCGgtttatagcattcgtatatactgtacattgttttattgatattgtaaatgggc                                       <  1:3332276‑M2/91‑54 (MQ=255)

                                                      aaCTGAGTGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGa                                      >  1:3020052/1‑91 (MQ=255)

                                                      aaCTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGa                                      <  2:559936/91‑1 (MQ=255)

                                                       aCTGAATGTTTTCTCATATTAATAAGGAAACATTCGgtttatagcattcgtatatactgtacattgttttattgatattgtaaatgggcta                                     <  2:2842545‑M2/91‑56 (MQ=255)

                                                       aCTGAATGTTTTCTCATATTAATAAGGAAACATTCGgtttatagcattcgtatatactgtacattgttttattgatattgtaaatgggcta                                     <  1:2240894‑M2/91‑56 (MQ=255)

                                                       aCTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAATAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGaa                                     <  1:722101/91‑1 (MQ=255)

                                                       aCTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGaa                                     <  1:264943/91‑1 (MQ=255)

                                                       aCTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGaa                                     <  1:2160765/91‑1 (MQ=255)

                                                       aCTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGaa                                     <  1:3348812/91‑1 (MQ=255)

                                                        cTGAATGTTTTCTCATATTAATAGGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGaaa                                    <  1:2328734/91‑1 (MQ=255)

                                                        cTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGaaa                                    >  1:1228700/1‑91 (MQ=255)

                                                        cTGAATGTTTTCTCATATTAATAAGGAAACATTCAgtttatagcattcgtatatactgtacattgttttattgatattgtaaatgggctaa                                    <  1:1298338‑M2/91‑57 (MQ=255)

                                                         tGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGaaaa                                   <  1:2064226/91‑1 (MQ=255)

                                                         tGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGaaaa                                   <  1:1484358/91‑1 (MQ=255)

                                                         tGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGaaaa                                   <  1:2063007/91‑1 (MQ=255)

                                                         tGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGaaaa                                   <  1:168135/91‑1 (MQ=255)

                                                          gAATGTTTTCTCATATTAATAAGGAAACATTCAgtttatagcattcgtatatactgtacattgttttattgatattgtaaatgggctaaag                                  <  1:2056851‑M2/91‑59 (MQ=255)

                                                           aaTGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAata                                 >  1:1742471/1‑91 (MQ=255)

                                                            aTGTTTTCTCATATTAATAAGGAAACATTCGgtttatagcattcgtatatactgtacattgttttattgatattgtaaatgggctaaagta                                <  1:226873‑M2/91‑61 (MQ=255)

                                                            aTGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAatat                                <  2:3004773/91‑1 (MQ=255)

                                                                tttCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGa                            >  1:740505/1‑91 (MQ=255)

                                                                 ttCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGAt                           <  2:2371807/91‑1 (MQ=255)

                                                                 ttCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGAt                           >  2:3037333/1‑91 (MQ=255)

                                                                 ttCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGAt                           >  2:3037157/1‑91 (MQ=255)

                                                                  tctcATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGAtt                          >  2:1039585/1‑91 (MQ=255)

                                                                    tcATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTAc                        <  2:2045690/91‑1 (MQ=255)

                                                                    tcATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTAc                        >  1:1018322/1‑91 (MQ=255)

                                                                    tcATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTAc                        >  1:3202314/1‑91 (MQ=255)

                                                                     cATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACg                       <  1:463484/91‑1 (MQ=255)

                                                                        atTAATACGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAg                    <  1:1946748/91‑1 (MQ=255)

                                                                        atTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAg                    <  2:2416469/91‑1 (MQ=255)

                                                                            ataaGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAGatat                >  1:3661196/1‑91 (MQ=255)

                                                                              aaGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGACGATATTc              >  1:1835797/1‑91 (MQ=255)

                                                                              aaGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAGATATTc              <  1:3119202/91‑1 (MQ=255)

                                                                               aGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAGATATTCa             <  2:2610316/91‑1 (MQ=255)

                                                                                ggAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAGATATTCaa            >  2:2166994/1‑91 (MQ=255)

                                                                                 gAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAGATATTCAAt           >  2:815873/1‑91 (MQ=255)

                                                                                  aaaCATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAGATATTCAAtt          <  2:2392902/91‑1 (MQ=255)

                                                                                  aaaCATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAGATATTCAAtt          <  2:2431305/91‑1 (MQ=255)

                                                                                   aaCATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAGATATTCAATTa         >  2:3433648/1‑91 (MQ=255)

                                                                                   aaCATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAGATATTCAATTa         <  2:288035/91‑1 (MQ=255)

                                                                                       ttCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTAGGAAGATATTCAATTAATAc     <  2:3395392/91‑1 (MQ=255)

                                                                                       ttCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAGATATTCAATTAATAc     <  1:481360/91‑1 (MQ=255)

                                                                                         cGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAGATATTCAATTAATCCCt   >  1:3497665/1‑91 (MQ=255)

                                                                                         cGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAGATATTCAATTAATACCt   >  2:3775585/1‑91 (MQ=255)

                                                                                         cGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAGATATTCAATTAATACCt   >  1:2600096/1‑91 (MQ=255)

                                                                                         cGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAGATATTCAATTAATACCt   <  2:2310840/91‑1 (MQ=255)

TTTAGCCCATTTACAATATCAATAAAACAATGTACAGTATATACGAATGCTATAAACTGAATGTTTTCTCATATTAATAAGGAAACATTCGGTTTTTAATTTGCATTTAAAAATAATTAGTTTTTAAAGGGGCTATTTAAAGTGAAAATATTTGATTACGAAGATATTCAATTAATACCTA  >  USA300TCH1516_ALE/1366440‑1366620

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.