| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1702257 = | 142 (0.750) | 17 (0.100) | 12/138 | NT | 11.4% | intergenic (‑1/+48) | comEA/tylM1 | ComE operon protein 1/dTDP‑3‑amino‑3,6‑dideoxy‑alpha‑D‑glucopyranose N,N‑dimethyltransferase |
| ? | USA300TCH1516_ALE | 1702302 = | 141 (0.860) | intergenic (‑46/+3) | comEA/tylM1 | ComE operon protein 1/dTDP‑3‑amino‑3,6‑dideoxy‑alpha‑D‑glucopyranose N,N‑dimethyltransferase | |||||
Only 100 of 279 total aligned reads displayed.
AATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTA > USA300TCH1516_ALE/1702167‑1702347 | aTTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATA < 1:1014005‑M1/91‑1 (MQ=255) aTTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATA < 1:2881102‑M1/91‑1 (MQ=255) aTTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATA > 1:605157‑M1/1‑91 (MQ=255) aaacatgttgaaacatttactgattttaatatagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTaaa > 2:1011874‑M1/88‑91 (MQ=255) aacatgttgaaacatttactgattttaatatagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTaaaa > 1:2475240‑M1/87‑91 (MQ=255) aaTACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAA > 1:1053466‑M1/1‑91 (MQ=255) acatgttgaaacatttactgattttaatatagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaatagaagTACAAc < 1:3491110‑M1/6‑1 (MQ=255) tACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACC > 1:285384‑M1/1‑91 (MQ=255) tACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACC < 2:1535193‑M1/91‑1 (MQ=255) catgttgaaacatttactgattttaatatagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAAcc > 2:551921‑M1/85‑91 (MQ=255) catgttgaaacatttactgattttaatatagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAAcc > 1:1401483‑M1/85‑91 (MQ=255) atgttgaaacatttactgattttaatatagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCa < 1:2109209‑M1/8‑1 (MQ=255) atgttgaaacatttactgattttaatatagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCa < 2:2763697‑M1/8‑1 (MQ=255) ccATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCAC < 1:3142536‑M1/91‑1 (MQ=255) ccATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCAC < 2:2162368‑M1/91‑1 (MQ=255) gttgaaacatttactgattttaatatagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCAct > 1:2677353‑M1/82‑91 (MQ=255) aTAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC > 1:1131904‑M1/1‑91 (MQ=255) tAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCActcc < 1:1170139/91‑1 (MQ=255) aaTTAAAATAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCActcct < 2:3373522/91‑1 (MQ=255) aTTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCActcctc < 1:3815109/91‑1 (MQ=255) aTTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCActcctc < 1:930063/91‑1 (MQ=255) ttAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCa < 2:38664/91‑1 (MQ=255) aaaCAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACt > 2:2280919/1‑91 (MQ=255) aacaacAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACtt > 2:1094266/1‑91 (MQ=255) acaacaGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACttt > 2:2692091/1‑91 (MQ=255) acaacaGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACttt > 1:2840193/1‑91 (MQ=255) acaacaGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACttt > 2:3516074/1‑91 (MQ=255) acaGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTtata > 1:3650832/1‑91 (MQ=255) acaGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTtata < 2:717058/91‑1 (MQ=255) caGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATac > 2:1048386/1‑91 (MQ=255) ttAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCt > 1:1963993/1‑91 (MQ=255) tAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTg < 1:2937619/91‑1 (MQ=255) aGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGa > 2:3461129/1‑91 (MQ=255) aGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGa > 1:34381/1‑91 (MQ=255) gAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAg > 1:1351916/1‑91 (MQ=255) gAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAg < 2:1888767/91‑1 (MQ=255) aaTATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCgctcagacgtgtataaagttgag < 2:1422601‑M1/91‑24 (MQ=255) aaTATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCgctcagacgtgtataaagttgag < 2:1664296‑M1/91‑24 (MQ=255) aaTATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGc < 2:819600/91‑1 (MQ=255) tagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTGAGCg > 1:403035‑M1/57‑91 (MQ=255) gatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAg > 1:1006933‑M1/55‑91 (MQ=255) tataACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCgctcagacgtgtataaagttgaggagt < 1:1745168‑M1/91‑28 (MQ=255) tataACTTCCAGTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAGCCACTCgctcagacgtgtataaagttgaggagt < 2:1562936‑M1/91‑28 (MQ=255) ataACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCgagtg < 1:2380829‑M2/91‑6 (MQ=255) taACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCgctcagacgtgtataaagttgaggagtgg < 1:2397906‑M1/91‑30 (MQ=255) taACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCgagtgg < 1:3333287‑M2/91‑7 (MQ=255) gaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTgg > 2:3184751‑M1/52‑91 (MQ=255) aaCTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCgagtggt < 1:3773786‑M2/91‑8 (MQ=255) aaCTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCgagtggt < 1:441569‑M2/91‑8 (MQ=255) aCTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCgctcagacgtgtataaagttgaggagtggtt < 2:2846791‑M1/91‑32 (MQ=255) cataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGttt > 1:1113327‑M1/49‑91 (MQ=255) taatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTa > 2:1119777‑M1/47‑91 (MQ=255) aatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTAc > 1:1997560‑M1/46‑91 (MQ=255) cATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACt < 2:2546846/91‑1 (MQ=255) tgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACtt > 1:3719098‑M1/44‑91 (MQ=255) ttGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACttt < 2:1269450/91‑1 (MQ=255) aagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGAGGTTTTACtttt > 2:2431601‑M1/42‑91 (MQ=255) gAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCgctcagacgtgtataaagttgaggagtg < 2:1165991‑M1/79‑29 (MQ=255) gAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTa < 1:985740/91‑1 (MQ=255) gAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTa > 1:1882390/1‑91 (MQ=255) aGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTAt < 1:1256720/91‑1 (MQ=255) gTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCgctcagacgtgtataaagttgaggagtggttttattgtatca < 2:2489561‑M1/91‑43 (MQ=255) tAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCgagaggttttattgtatcaat < 1:2588896‑M2/91‑22 (MQ=255) tAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTAtttt > 1:2044886/1‑91 (MQ=255) aaaaTCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTc > 1:2547331/1‑91 (MQ=255) aaaTCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCTTCAACTTTATACACGTCTGAGCGAGAGGATATACTTTTATTTTTTCg > 2:3579592/1‑91 (MQ=255) aTCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCa > 1:221458/1‑91 (MQ=255) aTCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCa < 2:1917012/91‑1 (MQ=255) tCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCaa < 2:3715042/91‑1 (MQ=255) cTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAAt > 1:2156883/1‑91 (MQ=255) cTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAAt > 1:12090/1‑91 (MQ=255) cTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAAt > 2:2063541/1‑91 (MQ=255) tgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGa > 1:264544‑M1/27‑91 (MQ=255) tataGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCgagtggttttattgtatcaatttttattacgc < 1:757469‑M2/91‑33 (MQ=255) tataGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGaa > 2:2650705/1‑91 (MQ=255) tataGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGaa > 1:3373818/1‑91 (MQ=255) taGCGTAATAAAAATTGATACAATATAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGaaaa < 1:3618249/91‑1 (MQ=255) taGCGTAATAAAAATTGATACAATAAAACCACTGCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGaaaa < 1:3172350/91‑1 (MQ=255) taGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGaaaa < 1:548171/91‑1 (MQ=255) taGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGaaaa > 2:137034/1‑91 (MQ=255) taGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGaaaa < 2:2840193/91‑1 (MQ=255) gCGTAATAAAAATTGATACAATAAAACCACTCgctcagacgtgtataaagttgaggagtggttttattgtatcaatttttattacgctata < 1:756968‑M1/91‑60 (MQ=255) gTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACaa < 1:1318639/91‑1 (MQ=255) ataaAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCt > 1:3201899/1‑91 (MQ=255) ataaAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCt < 2:58318/91‑1 (MQ=255) ataaAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCt < 1:1626709/91‑1 (MQ=255) aaaaaTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCa < 2:1432350/75‑1 (MQ=255) aaaaaTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCa > 1:1432350/1‑75 (MQ=255) aaaaTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTc > 2:3075738/1‑91 (MQ=255) aaTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTg > 2:2354745/1‑91 (MQ=255) aTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAGCAATCTTTCTGc < 1:2973051/91‑1 (MQ=255) aTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGc < 1:2229397/91‑1 (MQ=255) aTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGc < 2:665990/91‑1 (MQ=255) ttGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCa > 1:3707271/1‑91 (MQ=255) gATACAACAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATc < 1:1934654/91‑1 (MQ=255) aTACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCt < 1:962273/91‑1 (MQ=255) aCAATAAAACCACTCCTCAACATTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTc < 2:2536900/91‑1 (MQ=255) cAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCa > 2:1993144/1‑91 (MQ=255) aTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCAtt < 1:3381629/91‑1 (MQ=255) TAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTa > 1:3805490‑M1/1‑91 (MQ=255) | AATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTA > USA300TCH1516_ALE/1702167‑1702347 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |