BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1702257 =	142 (0.750)	17 (0.100)	12/138	NT	11.4%	intergenic (‑1/+48)	comEA/tylM1	ComE operon protein 1/dTDP‑3‑amino‑3,6‑dideoxy‑alpha‑D‑glucopyranose N,N‑dimethyltransferase
*	?	USA300TCH1516_ALE	1702302 =	141 (0.860)	17 (0.100)	12/138	NT	11.4%	intergenic (‑46/+3)	comEA/tylM1	ComE operon protein 1/dTDP‑3‑amino‑3,6‑dideoxy‑alpha‑D‑glucopyranose N,N‑dimethyltransferase

Only 100 of 267 total aligned reads displayed.

CCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAA  >  USA300TCH1516_ALE/1702212‑1702392

ccATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTAc                                                                                            >  2:443343/1‑91 (MQ=255)

 cATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACt                                                                                           >  2:781319/1‑91 (MQ=255)

 cATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACt                                                                                           <  2:2546846/91‑1 (MQ=255)

  tgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACtt                                                                                          >  1:3719098‑M1/44‑91 (MQ=255)

  aTTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACtt                                                                                          <  1:2904740/91‑1 (MQ=255)

    tGAGTTAAAAAATCTTTATAGCGTAATAAAAATAGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACtttt                                                                                        <  1:3185324/91‑1 (MQ=255)

    aagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGAGGTTTTACtttt                                                                                        >  2:2431724‑M1/42‑91 (MQ=255)

    aagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGAGGTTTTACtttt                                                                                        >  2:2431601‑M1/42‑91 (MQ=255)

     gAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTa                                                                                       <  1:1609207/91‑1 (MQ=255)

       gTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTAtt                                                                                     >  2:2781466/1‑91 (MQ=255)

         tAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTAtttt                                                                                   >  1:2044985/1‑91 (MQ=255)

            aaaaTCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTc                                                                                <  1:2225408/91‑1 (MQ=255)

            aaaaTCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTc                                                                                >  2:1060811/1‑91 (MQ=255)

               aTCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTcatt                                                                             <  2:2040339/91‑4 (MQ=255)

               aTCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCa                                                                             <  2:1917012/91‑1 (MQ=255)

                tCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCaa                                                                            <  2:3715042/91‑1 (MQ=255)

                 cTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAAt                                                                           >  1:2156883/1‑91 (MQ=255)

                   tgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGa                                                                         >  1:264544‑M1/27‑91 (MQ=255)

                    tataGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGaa                                                                        >  1:3373818/1‑91 (MQ=255)

                      taGCGTAATAAAAATTGATACAATATAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGaaaa                                                                      <  1:3618249/91‑1 (MQ=255)

                      taGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGaaaa                                                                      <  1:2407129/91‑1 (MQ=255)

                      taGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGaaaa                                                                      >  2:137034/1‑91 (MQ=255)

                      taGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGaaaa                                                                      <  1:548171/91‑1 (MQ=255)

                       aGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGaaaaa                                                                     >  2:3392724/1‑91 (MQ=255)

                         tcattgcgaaaaaataaaagtaaaaccactcgctcagacgtgtataaagttgaggagtggttttaCTTTTATTTTTTCGCAATGAAAAACa                                                                   >  1:265128‑M2/66‑91 (MQ=255)

                          gTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACaa                                                                  <  1:1318639/91‑1 (MQ=255)

                          gTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACaa                                                                  <  1:3771414/91‑1 (MQ=255)

                           taataaAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAAt                                                                 <  1:802300/91‑1 (MQ=255)

                             ataaAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCt                                                               <  2:58318/91‑1 (MQ=255)

                             ataaAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCt                                                               >  1:3201955/1‑91 (MQ=255)

                               aaaaaTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCa                                                                             <  2:1432350/75‑1 (MQ=255)

                                aaaaTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTc                                                            >  1:876460/1‑91 (MQ=255)

                                  aaTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTg                                                          >  2:2354745/1‑91 (MQ=255)

                                   aTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGc                                                         <  1:2692022/91‑1 (MQ=255)

                                    ttGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCa                                                        >  1:3707271/1‑91 (MQ=255)

                                      gATACAACAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATc                                                      <  1:1934654/91‑1 (MQ=255)

                                       aTACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCt                                                     <  1:962273/91‑1 (MQ=255)

                                        tACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCtt                                                    >  1:2863921/1‑91 (MQ=255)

                                        tACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCtt                                                    >  1:1426013/1‑91 (MQ=255)

                                        tACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCtt                                                    >  1:3664050/1‑91 (MQ=255)

                                         aCAATAAAACCACTCCTCAACATTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTc                                                   <  2:2536900/91‑1 (MQ=255)

                                          cAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCa                                                  >  2:1993144/1‑91 (MQ=255)

                                           aaTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCAt                                                 <  1:403954/91‑1 (MQ=255)

                                            gtaaaaccactcgctcagacgtgtataaagttgaggagtggttttaCTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCAtt                                                >  1:1997560‑M2/47‑91 (MQ=255)

                                            aTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCAtt                                                <  1:3381629/91‑1 (MQ=255)

                                             TAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTa                                               >  1:3805490‑M1/1‑91 (MQ=255)

                                               aaaccactcgctcagacgtgtataaagttgaggagtggttttaCTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATg                                             >  1:1113327‑M2/44‑91 (MQ=255)

                                                AACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGt                                            <  1:674016‑M1/91‑1 (MQ=255)

                                                 ACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGtt                                           >  1:1004511‑M1/1‑91 (MQ=255)

                                                   CACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCa                                         >  2:3182659‑M1/1‑91 (MQ=255)

                                                    ACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCAt                                        <  2:3192713‑M1/91‑1 (MQ=255)

                                                    ACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCAt                                        <  1:1316274‑M1/91‑1 (MQ=255)

                                                     CTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATc                                       <  1:1761836‑M1/91‑1 (MQ=255)

                                                     CTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTCACTTTTATTTTCTCGCACCGAAAAACAATCATTCTGCATCTTCACTACTTTCATc                                       <  2:1126915‑M1/91‑1 (MQ=255)

                                                      TCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCt                                      <  2:2172587‑M1/91‑1 (MQ=255)

                                                      TCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCt                                      <  1:1672918‑M1/91‑1 (MQ=255)

                                                       CCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTa                                     >  2:2605395‑M1/1‑91 (MQ=255)

                                                       CCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTa                                     >  2:2196842‑M1/1‑91 (MQ=255)

                                                       CCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTa                                     >  1:2995251‑M1/1‑91 (MQ=255)

                                                        ctcAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCtat                                    <  1:41954/91‑1 (MQ=255)

                                                         tcAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCtata                                   >  2:1494381/1‑91 (MQ=255)

                                                          cAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTatat                                  <  1:210901/91‑1 (MQ=255)

                                                          cAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTatat                                  >  2:2750618/1‑91 (MQ=255)

                                                           aaCTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATAtt                                 >  2:852789/1‑91 (MQ=255)

                                                              tttATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAGAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTaaa                              >  2:3422091/1‑91 (MQ=255)

                                                               ttATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTTTCTTTTTAAAACAATCTTTCTGCATCTTCATTTTGTTCTTCTATATTaaaa                             >  2:181588/1‑91 (MQ=255)

                                                                tataCACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAAt                            <  2:2886874/91‑1 (MQ=255)

                                                                 ataCACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATc                           >  1:2935419/1‑91 (MQ=255)

                                                                 ataCACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATc                           >  1:1199359/1‑91 (MQ=255)

                                                                   acacGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAg                         <  2:3040455/91‑1 (MQ=255)

                                                                    cacGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGt                        >  2:1215150/1‑91 (MQ=255)

                                                                    cacGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGt                        >  2:2731427/1‑91 (MQ=255)

                                                                      cGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTaa                      <  1:456788/91‑1 (MQ=255)

                                                                      cGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTaa                      >  2:1462552/1‑91 (MQ=255)

                                                                      cGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTaa                      >  2:1320027/1‑91 (MQ=255)

                                                                      cGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTaa                      >  1:1250685/1‑91 (MQ=255)

                                                                      cGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTaa                      >  1:3353205/1‑91 (MQ=255)

                                                                       gTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTaaa                     <  1:2239739/91‑1 (MQ=255)

                                                                         cTGAGCGAGTGGTTTTACTTTTATTTTTTCGCCATGAAAAACACTCTTTCTGCCTCTTCATCATGTTCATCTATATTACAATCAGTAAATg                   >  2:206419/1‑91 (MQ=255)

                                                                         cTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATg                   <  2:245145/91‑1 (MQ=255)

                                                                          tGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGt                  >  1:1151287/1‑91 (MQ=255)

                                                                           gAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGtt                 <  2:1672918/91‑1 (MQ=255)

                                                                           gAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGtt                 <  2:3622439/91‑1 (MQ=255)

                                                                            aGCGAGTGGTTTTACTTTTATTTTTTCGCGATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGttt                <  1:3116406/91‑1 (MQ=255)

                                                                            aGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAATACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGtta                <  2:3830780/91‑2 (MQ=255)

                                                                            aGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGttt                <  2:285384/91‑1 (MQ=255)

                                                                             gCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTc               >  1:2562540/1‑91 (MQ=255)

                                                                             gCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTc               <  1:1880766/91‑1 (MQ=255)

                                                                             gCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCGGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTc               <  2:3559727/91‑1 (MQ=255)

                                                                              cGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCa              >  1:3176067/1‑91 (MQ=255)

                                                                              cGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCa              >  1:169926/1‑91 (MQ=255)

                                                                              cGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCa              >  1:1398848/1‑91 (MQ=255)

                                                                                  tggttttaCTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACAt          <  1:1437552‑M2/83‑1 (MQ=255)

                                                                                  tggttttaCTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACAt          <  1:999826‑M2/83‑1 (MQ=255)

                                                                                   ggttttaCTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATg         >  2:551921‑M2/8‑91 (MQ=255)

                                                                                   ggttttaCTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATg         >  2:1040264‑M2/8‑91 (MQ=255)

                                                                                    gttgtaCTTCTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGt        <  1:3491110‑M2/85‑1 (MQ=255)

                                                                                    gttgtaCTTATATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGt        <  1:3489197‑M2/85‑1 (MQ=255)

                                                                                        taCTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTaa    <  1:1011874‑M2/89‑1 (MQ=255)

                                                                                         aCTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTaaa   <  1:3855492‑M2/90‑1 (MQ=255)

CCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAA  >  USA300TCH1516_ALE/1702212‑1702392

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.