BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1853635 =	205 (1.080)	17 (0.100)	10/144	NT	8.9%	intergenic (+38/+60)	acuC/ccpA	Acetoin utilization protein AcuC/Catabolite control protein A
*	?	USA300TCH1516_ALE	1853683 =	162 (0.950)	17 (0.100)	10/144	NT	8.9%	intergenic (+86/+12)	acuC/ccpA	Acetoin utilization protein AcuC/Catabolite control protein A

Only 100 of 274 total aligned reads displayed.

ATAAAAAATTAGCTTTACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTG  >  USA300TCH1516_ALE/1853545‑1853725

ataaaaaatTAGCTTTACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATaaaa                                                                                            >  2:401940/1‑91 (MQ=255)

ataaaaaatTAGCTTTACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATaaaa                                                                                            <  2:24266/91‑1 (MQ=255)

ataaaaaatTAGCTTTACATATAGCGAGGTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATaaaa                                                                                            >  2:685338/1‑91 (MQ=255)

 taaaaaatTAGCTTTACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAg                                                                                           <  2:1081792/91‑1 (MQ=255)

 taaaaaatTAGCTTTACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAg                                                                                           >  1:1976033/1‑91 (MQ=255)

 atatgaacgatgaaaagatagaagaaccaaatgtagttttacctcacagaattgaataccgaggaactacaaaataaattcacaaaattAg                                                                                           >  1:3530845‑M1/90‑91 (MQ=255)

 aaaaaaatTAGCTTTACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAg                                                                                           <  2:1048844/90‑1 (MQ=255)

  tatgaacgatgaaaagatagaagaaccaaatgtagttttacctcacagaattgaataccgaggaactacaaaataaattcacaaaattAgg                                                                                          >  1:2767549‑M1/89‑91 (MQ=255)

   atgaacgatgaaaagatagaagaaccaaatgtagttttacctcacagaattgaataccgaggaactacaaaataaattcacaaaattAGGc                                                                                         <  1:771713‑M1/4‑1 (MQ=255)

   atgaacgatgaaaagatagaagaaccaaatgtagttttacctcacagaattgaataccgaggaactacaaaataaattcacaaaattAGGc                                                                                         <  1:1995101‑M1/4‑1 (MQ=255)

   aaaaatTAGCTTTACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGc                                                                                         >  2:112808/1‑91 (MQ=255)

    tgaacgatgaaaagatagaagaaccaaatgtagttttacctcacagaattgaataccgaggaactacaaaataaattcacaaaattAGGCa                                                                                        <  2:2624642‑M1/5‑1 (MQ=255)

    tgaacgatgaaaagatagaagaaccaaatgtagttttacctcacagaattgaataccgaggaactacaaaataaattcacaaaattAGGCa                                                                                        >  1:1889757‑M1/87‑91 (MQ=255)

    tgaacgatgaaaagatagaagaaccaaatgtagttttacctcacagaattgaataccgaggaactacaaaataaattcacaaaattAGGCa                                                                                        >  1:1551999‑M1/87‑91 (MQ=255)

    aaaatTAGCTTTACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCa                                                                                        <  2:1449436/91‑1 (MQ=255)

     gaacgatgaaaagatagaagaaccaaatgtagttttacctcacagaattgaataccgaggaactacaaaataaattcacaaaattAGGCAt                                                                                       >  2:2499670‑M1/86‑91 (MQ=255)

     aaatTAGCTTTACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCAt                                                                                       <  1:2362335/91‑1 (MQ=255)

      aatTAGCTTTACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCAtt                                                                                      >  1:221333/1‑91 (MQ=255)

       atTAGCTTTACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCAttc                                                                                     >  1:2156209/1‑91 (MQ=255)

       atTAGCTTTACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCAttc                                                                                     <  1:233504/91‑1 (MQ=255)

         tAGCTTTACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCAttctt                                                                                   <  1:3859526/91‑1 (MQ=255)

         tAGCTTTACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCAttctt                                                                                   <  2:3097579/91‑1 (MQ=255)

          aGCTTTACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCAttcttc                                                                                  >  1:735287/1‑91 (MQ=255)

          aGCTTTACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCAttcttc                                                                                  >  1:2403018/1‑91 (MQ=255)

           gCTTTACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTcc                                                                                 <  1:1818066/91‑1 (MQ=255)

            cTTTACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCa                                                                                >  2:566749/1‑91 (MQ=255)

            cTTTACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCa                                                                                <  2:2160514/91‑1 (MQ=255)

             tttACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCAttcttc                                                                                  >  2:46856/1‑88 (MQ=255)

             tttACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCAttcttc                                                                                  <  1:46856/88‑1 (MQ=255)

             tttACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCaa                                                                               <  1:528711/91‑1 (MQ=255)

             tttACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCaa                                                                               >  2:2153070/1‑91 (MQ=255)

                aCATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAacac                                                                            >  2:866173/1‑91 (MQ=255)

                 cATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACAcc                                                                           <  2:2376832/91‑1 (MQ=255)

                 cATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACAcc                                                                           <  1:2479689/91‑1 (MQ=255)

                  atatAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACAccc                                                                          <  1:2234948/91‑1 (MQ=255)

                  atatAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACAccc                                                                          <  1:967498/91‑1 (MQ=255)

                   tataGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCa                                                                         <  1:2762027/91‑1 (MQ=255)

                    ataGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCat                                                                        >  2:1995101/1‑91 (MQ=255)

                       agaaccaaatgtagttttacctcacagaattgaataccgaggaactacaaaataaattcacaaaattAGGCATTCTTCCAACACCCAtata                                                                     <  2:3011476‑M1/24‑1 (MQ=255)

                         aaccaaatgtagttttacctcacagaattgaataccgaggaactacaaaataaattcacaaaattAGGCAttc                                                                                     <  1:2594484‑M1/8‑1 (MQ=255)

                         aaccaaatgtagttttacctcacagaattgaataccgaggaactacaaaataaattcacaaaattAGGCAttc                                                                                     >  2:2594484‑M1/66‑73 (MQ=255)

                          aGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAAtt                                                                  <  1:3465676/91‑1 (MQ=255)

                          aGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAAtt                                                                  >  2:1689386/1‑91 (MQ=255)

                          aGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAAtt                                                                  <  1:573795/91‑1 (MQ=255)

                            ttGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTg                                                                <  1:3008976/91‑1 (MQ=255)

                              ggTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTggg                                                              <  2:1509925/91‑1 (MQ=255)

                               gTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACA‑CCATATAATTTGGGTc                                                            >  1:3208012/1‑91 (MQ=255)

                                tACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTc                                                            <  2:3124410/91‑1 (MQ=255)

                                 aCGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCg                                                           >  2:3858105/1‑91 (MQ=255)

                                 aCGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCg                                                           >  2:3742723/1‑91 (MQ=255)

                                 aCGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCg                                                           >  2:3102476/1‑91 (MQ=255)

                                 aCGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCg                                                           >  2:1097933/1‑91 (MQ=255)

                                    gttttacctcacagaattgaataccgaggaactacaaaataaattcacaaaattAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTa                                                        >  1:3011476‑M1/55‑91 (MQ=255)

                                       cTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGAt                                                     >  2:802093/1‑91 (MQ=255)

                                         aCTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGa                                                   >  2:258116/1‑91 (MQ=255)

                                           tCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAAt                                                 >  2:2854538/1‑91 (MQ=255)

                                           tCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAAt                                                 >  1:3419651/1‑91 (MQ=255)

                                           tCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAAt                                                 >  1:2347536/1‑91 (MQ=255)

                                            tcacagaattgaataccgaggaactacaaaataaattcacaaaattAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATg                                                >  1:8115‑M1/47‑91 (MQ=255)

                                            cGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATg                                                <  1:3678566/91‑1 (MQ=255)

                                            cGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATg                                                >  2:3218866/1‑91 (MQ=255)

                                             cacagaattgaataccgaggaactacaaaataaattcacaaaattAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGc                                               >  2:2309557‑M1/46‑91 (MQ=255)

                                              tCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGcc                                              <  1:2035192/91‑1 (MQ=255)

                                              tCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGcc                                              <  1:421890/91‑1 (MQ=255)

                                              acagaattgaataccgaggaactacaaaataaattcacaaaattAGGCATTCTTCCAACACCCATATAATGTGGGTCGTTAGATGAATGcc                                              >  2:174731‑M1/45‑91 (MQ=255)

                                                 aTAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTaa                                           <  1:1226105/91‑1 (MQ=255)

                                                  tAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAAt                                          <  2:1805665/91‑1 (MQ=255)

                                                  aattgaataccgaggaactacaaaataaattcacaaaattAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAAt                                          >  2:1217312‑M1/41‑91 (MQ=255)

                                                     gTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAAtttt                                       >  1:316857/1‑91 (MQ=255)

                                                      tAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTtg                                      >  1:670834/1‑91 (MQ=255)

                                                        aCCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTtgtg                                    <  1:3382207/91‑1 (MQ=255)

                                                        aCCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTtgtg                                    <  1:3774367/91‑1 (MQ=255)

                                                          cTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGaa                                  <  2:2465816/91‑1 (MQ=255)

                                                          cTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGaa                                  >  1:2915461/1‑91 (MQ=255)

                                                           tAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAat                                 <  1:1382346/91‑1 (MQ=255)

                                                           tAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAat                                 <  1:930845/91‑1 (MQ=255)

                                                           tAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAat                                 <  1:3821690/91‑1 (MQ=255)

                                                            aaTCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAatt                                >  1:282155/1‑91 (MQ=255)

                                                            aaTCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAatt                                >  1:3647963/1‑91 (MQ=255)

                                                              tCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCGACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAattta                              >  2:3603648/1‑91 (MQ=255)

                                                               cTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAatttat                             >  2:1585938/1‑91 (MQ=255)

                                                                  cAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTAtttt                          >  2:3301457/1‑91 (MQ=255)

                                                                  cAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTAtttt                          >  2:3433073/1‑91 (MQ=255)

                                                                    aCGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGt                        <  1:3280012/91‑1 (MQ=255)

                                                                    aCGATTTTAAAAGATAAATAAAAGGCATTCTTCAAACTCCCATATACTTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGt                        >  1:3092515/1‑91 (MQ=255)

                                                                     cGATTTTGAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTa                       <  1:1944689/91‑1 (MQ=255)

                                                                      gATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAg                      >  2:824377/1‑91 (MQ=255)

                                                                         tttAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTc                   <  2:1956320/91‑1 (MQ=255)

                                                                         tttAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTc                   >  2:3530783/1‑91 (MQ=255)

                                                                         tttAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTc                   <  2:2681686/91‑1 (MQ=255)

                                                                           tAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCt                 >  1:30704/1‑91 (MQ=255)

                                                                           tAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAAGTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTccc                 >  2:3181900/1‑90 (MQ=255)

                                                                            aaaaGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTc                >  2:2926019/1‑91 (MQ=255)

                                                                              aaGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCgg              >  2:2234479/1‑91 (MQ=255)

                                                                                    aataaaAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCa        >  1:1079874/1‑91 (MQ=255)

                                                                                      taaaAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAAt      >  2:3560922/1‑91 (MQ=255)

                                                                                      taaaAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAAt      >  2:1037480/1‑91 (MQ=255)

                                                                                       aaaaGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAAtt     <  1:3330554/91‑1 (MQ=255)

                                                                                       aaaaGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAAtt     >  2:1656207/1‑91 (MQ=255)

                                                                                          AGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAAtt     >  2:3827523‑M1/1‑88 (MQ=255)

ATAAAAAATTAGCTTTACATATAGCGAGTTGGTACGAATCTACTCGTCAATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTG  >  USA300TCH1516_ALE/1853545‑1853725

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.