BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1853635 =	205 (1.080)	17 (0.100)	10/144	NT	8.9%	intergenic (+38/+60)	acuC/ccpA	Acetoin utilization protein AcuC/Catabolite control protein A
*	?	USA300TCH1516_ALE	1853683 =	162 (0.950)	17 (0.100)	10/144	NT	8.9%	intergenic (+86/+12)	acuC/ccpA	Acetoin utilization protein AcuC/Catabolite control protein A

Only 100 of 241 total aligned reads displayed.

AATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTGGTTCTTCTATCTTTTCATCGTTCATATAT  >  USA300TCH1516_ALE/1853593‑1853773

 gaattgaataccgaggaactacaaaataaattcacaaaattAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTaa                                                                                           >  1:2815491‑M1/42‑91 (MQ=255)

  tAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAAt                                                                                          <  2:1805665/91‑1 (MQ=255)

  tAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAAt                                                                                          >  1:201377/1‑91 (MQ=255)

    aGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAAttt                                                                                        >  2:3114735/1‑91 (MQ=255)

    aGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAAttt                                                                                        >  1:633159/1‑91 (MQ=255)

      tAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTtg                                                                                      <  2:3077842/91‑1 (MQ=255)

      tAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTtg                                                                                      >  1:670834/1‑91 (MQ=255)

       aaCCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTtgt                                                                                     <  1:112808/91‑1 (MQ=255)

       aaCCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTtgt                                                                                     <  1:1379806/91‑1 (MQ=255)

       aaCCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTtgt                                                                                     >  1:95585/1‑91 (MQ=255)

        aCCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTtgtg                                                                                    <  1:3382207/91‑1 (MQ=255)

        aCCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTtgtg                                                                                    >  1:1863204/1‑91 (MQ=255)

          cTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGaa                                                                                  <  2:2465816/91‑1 (MQ=255)

           tAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAat                                                                                 <  1:930845/91‑1 (MQ=255)

           tAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAat                                                                                 <  1:3821690/91‑1 (MQ=255)

            aaTCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAatt                                                                                >  1:3647963/1‑91 (MQ=255)

            aaTCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAatt                                                                                >  2:3791048/1‑91 (MQ=255)

            aaTCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAatt                                                                                <  2:2093642/91‑1 (MQ=255)

            aaTCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAatt                                                                                >  1:282155/1‑91 (MQ=255)

               cTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAatttat                                                                             >  2:1586001/1‑91 (MQ=255)

                  cAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTAtttt                                                                          >  1:3446807/1‑91 (MQ=255)

                    aCGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACGCCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGt                                                                        >  1:3282772/1‑91 (MQ=255)

                    aCGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGt                                                                        >  2:1117943/1‑91 (MQ=255)

                    aCGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGt                                                                        <  1:3218866/91‑1 (MQ=255)

                     cGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTa                                                                       <  2:2872539/91‑1 (MQ=255)

                      gATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAg                                                                      >  2:824377/1‑91 (MQ=255)

                         tttAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTc                                                                   >  2:2938796/1‑91 (MQ=255)

                         tttAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTc                                                                   >  2:3530783/1‑91 (MQ=255)

                         tttAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTc                                                                   >  2:3520458/1‑91 (MQ=255)

                          ttAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTcc                                                                  >  2:2278522/1‑91 (MQ=255)

                          ttAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTcc                                                                  <  2:3739649/91‑1 (MQ=255)

                           tAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCt                                                                 >  1:30704/1‑91 (MQ=255)

                           tAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAAGTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTccc                                                                 >  2:3181900/1‑90 (MQ=255)

                            aaaaGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTc                                                                >  2:2926877/1‑91 (MQ=255)

                            aaaaGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTc                                                                >  2:2617847/1‑91 (MQ=255)

                            aaaaGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTc                                                                <  2:3208167/91‑1 (MQ=255)

                             aaaGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCg                                                               >  1:209672/1‑91 (MQ=255)

                               aGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGt                                                             >  2:3635676/1‑91 (MQ=255)

                                  taaataaaAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTAtt                                                          >  2:1956609/1‑91 (MQ=255)

                                   aaataaaAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTc                                                         <  2:384738/91‑1 (MQ=255)

                                   aaataaaAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTc                                                         <  1:408884/91‑1 (MQ=255)

                                    aataaaAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCa                                                        >  2:429217/1‑91 (MQ=255)

                                     ataaaAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCaa                                                       <  2:2651901/91‑1 (MQ=255)

                                      taaaAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAAt                                                      >  2:3560922/1‑91 (MQ=255)

                                      taaaAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAAt                                                      >  2:1037480/1‑91 (MQ=255)

                                       attaggcattcatctaacgacccaaattatatgggtgttggaagaatgcctAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAAtt                                                     >  2:1217312‑M2/52‑91 (MQ=255)

                                       aaaaGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAAtt                                                     >  2:1656207/1‑91 (MQ=255)

                                         aaGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCt                                                   <  1:1413481/91‑1 (MQ=255)

                                         aaGGCATTCCTCCAACACCCCAATAATTTGGGTCGTTAGATGAATGCCTCATTTTGTGAATATATTTTTTAGTTCCTCGGTATTCAATTCt                                                   >  1:3799163/1‑91 (MQ=255)

                                          AGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCtg                                                  <  1:772938‑M1/91‑1 (MQ=255)

                                           ggcattcatctaacgacccacattatatgggtgttggaagaatgcctAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCtgt                                                 >  2:174731‑M2/48‑91 (MQ=255)

                                            gcattcatctaacgacccaaattatatgggtgttggaagaatgcctAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCtgtg                                                >  2:2309557‑M2/47‑91 (MQ=255)

                                            gcattcatctaacgacccaaattatatgggtgttggaagaatgcctAATTTTGTGAAATTATTTTGTAGTTCCTCGGTATTCAATTCtgtg                                                >  1:3178803‑M2/47‑91 (MQ=255)

                                             cattcatctaacgacccaaattatatgggtgttggaagaatgcctAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGa                                               >  1:8115‑M2/46‑91 (MQ=255)

                                              ATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAg                                              <  2:1407277‑M1/91‑1 (MQ=255)

                                               TTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAgg                                             >  1:3135025‑M1/1‑91 (MQ=255)

                                                TCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGt                                            >  2:2802900‑M1/1‑91 (MQ=255)

                                                  ttcCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTaa                                          >  2:366682/1‑91 (MQ=255)

                                                    ccAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTaaaa                                        >  2:1584415/1‑91 (MQ=255)

                                                     taacgacccaaattatatgggtgttggaagaatgcctAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAAc                                       >  1:3011476‑M2/38‑91 (MQ=255)

                                                     cAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAAc                                       <  1:1067617/91‑1 (MQ=255)

                                                       acacCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTa                                     <  1:757756/91‑1 (MQ=255)

                                                        cacCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTAc                                    <  1:1903405/91‑1 (MQ=255)

                                                          cccATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACAt                                  <  2:735367/91‑1 (MQ=255)

                                                            cATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACAttt                                <  1:1689386/91‑1 (MQ=255)

                                                             atatAATTTGGGTCGTTAGATGAATGACTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTg                               >  2:2209658/1‑91 (MQ=255)

                                                              tataATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTgg                              >  2:50051/1‑91 (MQ=255)

                                                              tataATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTgg                              <  1:1219406/91‑1 (MQ=255)

                                                               ataATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTGGt                             >  2:658740/1‑91 (MQ=255)

                                                                taATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTGGtt                            >  1:2793520/1‑91 (MQ=255)

                                                                 aaTTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTGGttc                           >  2:2427920/1‑91 (MQ=255)

                                                                  aTTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTGGttct                          <  1:2560807/91‑1 (MQ=255)

                                                                  aTTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTGGttct                          <  2:2639807/91‑1 (MQ=255)

                                                                  aTTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTGGttct                          <  2:3412725/91‑1 (MQ=255)

                                                                    ttGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTGGttcttc                        <  2:2403018/91‑1 (MQ=255)

                                                                    ttGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTGGttcttc                        <  1:3413724/91‑1 (MQ=255)

                                                                        gTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTGGTTCTTCTATc                    >  1:1123253/1‑91 (MQ=255)

                                                                         tCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTGGTTCTTCTATCt                   <  1:1275178/91‑1 (MQ=255)

                                                                         tCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTGGTTCTTCTATCt                   >  1:3706414/1‑91 (MQ=255)

                                                                          cGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTGGGTATTCAGTTCGGTGAGGTAAAACTACATTTGGTTCTTCTATCtt                  <  1:3091414/91‑1 (MQ=255)

                                                                          cGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTGGTTCTTCTATCtt                  >  1:1891323/1‑91 (MQ=255)

                                                                           gTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTGGTTCTTCTATCttt                 <  1:1657216/91‑1 (MQ=255)

                                                                           gTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTGGTTCTTCTATCttt                 >  2:2716410/1‑91 (MQ=255)

                                                                           gTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTGGTTCTTCTATCttt                 <  1:2617847/91‑1 (MQ=255)

                                                                            ttAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTGGTTCTTCTATCtttt                <  2:2469244/91‑1 (MQ=255)

                                                                            ttAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTGGTTCTTCTATCtttt                >  2:2170597/1‑91 (MQ=255)

                                                                               gATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAATTACATTTGGTTCTTCTATCTTTTCAt             >  2:3826399/1‑91 (MQ=255)

                                                                                aTGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTGGTTCTTCTATCTTTTCATc            <  1:383180/91‑1 (MQ=255)

                                                                                  gaatgcctAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTGGtt                            >  2:2594484‑M2/9‑73 (MQ=255)

                                                                                  gaatgcctAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTGGtt                            <  1:2594484‑M2/65‑1 (MQ=255)

                                                                                    atgcctAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTGGTTCTTCTATCTTTTCATCGTTc        >  2:2499670‑M2/7‑91 (MQ=255)

                                                                                      gcctAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTGGTTCTTCTATCTTTTCATCGTTCat      <  2:1484752‑M2/87‑1 (MQ=255)

                                                                                      gcctAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTGGTTCTTCTATCTTTTCATCGTTCat      <  1:234797‑M2/87‑1 (MQ=255)

                                                                                       cctAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTGGTTCTTCTATCTTTTCATCGTTCata     >  1:2767549‑M2/4‑91 (MQ=255)

                                                                                        ctAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTGGTTCTTCTATCTTTTCATCGTTCatat    >  2:561327‑M2/3‑91 (MQ=255)

                                                                                        ctAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTGGTTCTTCTATCTTTTCATCGTTCatat    >  1:3530845‑M2/3‑91 (MQ=255)

                                                                                        ctAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTGGTTCTTCTATCTTTTCATCGTTCatat    >  1:509660‑M2/3‑91 (MQ=255)

                                                                                         tAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTGGTTCTTCTATCTTTTCATCGTTCatata   >  1:2389205‑M2/2‑91 (MQ=255)

                                                                                          aaTTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTGGTTCTTCTATCTTTTc               >  1:1529079/1‑78 (MQ=255)

                                                                                          aaTTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTGGTTCTTCTATCTTTTCATCGTTCatatat  <  2:872718/91‑1 (MQ=255)

AATAAGTAACCTAATCTGCAACGATTTTAAAAGATAAATAAAAGGCATTCTTCCAACACCCATATAATTTGGGTCGTTAGATGAATGCCTAATTTTGTGAATTTATTTTGTAGTTCCTCGGTATTCAATTCTGTGAGGTAAAACTACATTTGGTTCTTCTATCTTTTCATCGTTCATATAT  >  USA300TCH1516_ALE/1853593‑1853773

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.