BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1933839 =	213 (1.120)	10 (0.060)	7/142	NT	5.5%	coding (1409/3816 nt)	USA300HOU_RS09605	hypothetical protein
*	?	USA300TCH1516_ALE	1933862 =	158 (0.940)	10 (0.060)	7/142	NT	5.5%	coding (1386/3816 nt)	USA300HOU_RS09605	hypothetical protein

Only 100 of 280 total aligned reads displayed.

TAATTTAGTTGATTAAATTCTGAGTCGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTAA  >  USA300TCH1516_ALE/1933749‑1933929

tgtgagtactgtgtaaataaatttaaggaatttgaccaaactataagtgttgcagagctatttacaaatgttcttaagacagtaaatatta                                                                                            <  1:914488‑M1/1‑1 (MQ=255)

 aaTTTAGTTTATTAAATTCTGAGTCGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTatcaaaatcaaa                                                                                           <  1:3710686/91‑1 (MQ=255)

 aaTTTAGTTGATTAAATTCTGAGTCGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTatcaaaatcaaa                                                                                           <  1:447122/91‑1 (MQ=255)

 aaTTTAGTTGATTAAATTCCGAGTCGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTatcaaaatcaaa                                                                                           >  2:3391790/1‑91 (MQ=255)

  tgagtactgtgtaaataaatttaaggaatttgaccaaactataagtgttgcagagctatttacaaatgttcttaagacagtaaatattAAt                                                                                          <  1:2589236‑M1/3‑1 (MQ=255)

  tgagtactgtgtaaataaatttaaggaatttgaccaaactataagtgttgcagagctatttacaaatgttcttaagacagtaaatattAAt                                                                                          >  2:2194320‑M1/89‑91 (MQ=255)

   tttAGTTGATTAAATTCTGAGTCGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAAtt                                                                                         <  2:674772/91‑1 (MQ=255)

    ttAGTTGATTAAATTCTGAGTCGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAAttt                                                                                        <  1:1345607/91‑1 (MQ=255)

     tAGTTGATTAAATTCTGAGTCGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTa                                                                                       <  1:1418130/91‑1 (MQ=255)

     gtactgtgtaaataaatttaaggaatttgaccaaactataagtgttgcagagctatttacaaatgttcttaagacagtaaatattAATTTa                                                                                       >  2:3540059‑M1/86‑91 (MQ=255)

     gtactgtgtaaataaatttaaggaatttgaccaaactataagtgttgcagagctatttacaaatgttcttaagacagtaaatattAATTTa                                                                                       >  2:1296285‑M1/86‑91 (MQ=255)

       actgtgtaaataaatttaaggaatttgaccaaactataagtgttgcagagctatttacaaatgttcttaagacagtaaatattAATTTATc                                                                                     >  2:2384919‑M1/84‑91 (MQ=255)

        ctgtgtaaataaatttaaggaatttgaccaaactataagtgttgcagagctatttacaaatgttcttaagacagtaaatattAATTTATCt                                                                                    <  2:587502‑M1/9‑1 (MQ=255)

        ctgtgtaaataaatttaagaaatttgaccaaactataagtgttgcagagatatttacaaatgttcttaagacagtaaatattAATTTATCt                                                                                    >  2:499201‑M1/83‑91 (MQ=255)

          gATTAAATTCTGAGTCGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTc                                                                                  >  2:1640606/1‑91 (MQ=255)

          gATTAAATTCTGAGTCGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTc                                                                                  >  1:10279/1‑91 (MQ=255)

          gATTAAATTCTGAGTCGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTc                                                                                  >  1:2123419/1‑91 (MQ=255)

          gATTAAATTCTGAGTCGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTc                                                                                  >  1:3020166/1‑91 (MQ=255)

          gATTAAATTCTGAGTCGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTc                                                                                  >  1:2832805/1‑91 (MQ=255)

           aTTAAATTCTGAGTCGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCt                                                                                    <  2:1588072/88‑1 (MQ=255)

            ttAAATTCTGAGTCGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCt                                                                                <  1:3778867/91‑1 (MQ=255)

              aaaTTCTGAGTCGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTa                                                                              <  1:3377691/91‑1 (MQ=255)

                   cTGAGTCGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATaa                                                                         >  1:621481/1‑91 (MQ=255)

                    tGAGTCGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATaaa                                                                        <  2:324913/91‑1 (MQ=255)

                    tGAGTCGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATaaa                                                                        >  2:3165945/1‑91 (MQ=255)

                    tGAGTCGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATaaa                                                                        <  2:3663480/91‑1 (MQ=255)

                     tttaaggaatttgaccaaactataagtgttgcagagctatttacaaatgttcttaagacagtaaatattAATTTATCTTCCTTAGATAAAt                                                                       >  2:1932793‑M1/70‑91 (MQ=255)

                     gAGTCGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAAt                                                                       >  1:2458830/1‑91 (MQ=255)

                     gAGTCGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAAt                                                                       >  2:1210135/1‑91 (MQ=255)

                     gAGTCGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAAt                                                                       >  1:3531350/1‑91 (MQ=255)

                     gAGTCGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAAt                                                                       <  1:3250942/91‑1 (MQ=255)

                      aGTCGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAAtt                                                                      >  2:1831624/1‑91 (MQ=255)

                      aGTCGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAAtt                                                                      >  2:79684/1‑91 (MQ=255)

                       gTCGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTa                                                                     <  1:1986630/91‑1 (MQ=255)

                       gTCGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTa                                                                     >  2:2832925/1‑91 (MQ=255)

                        tCGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTaa                                                                    >  1:2391488/1‑91 (MQ=255)

                         cGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAat                                                                   <  2:2890402/91‑1 (MQ=255)

                         cGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAat                                                                   >  2:2659407/1‑91 (MQ=255)

                          ggaatttgaccaaactataagtgttgcagagctatttacaaatgttcttaagacagtaaatattAATTTATCTTCCTTAGATAAATTAata                                                                  >  2:2475734‑M1/65‑91 (MQ=255)

                              aTTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTa                                                              >  2:390884/1‑91 (MQ=255)

                               ttAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTAc                                                             >  1:3762857/1‑91 (MQ=255)

                               ttAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTAc                                                             <  2:139061/91‑1 (MQ=255)

                                tAATTCAACTAGTCCTTTTATTACTTTTTGTACAACATTAATCGTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACt                                                            <  2:1162228/91‑1 (MQ=255)

                                tAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACt                                                            <  2:3039863/91‑1 (MQ=255)

                                tAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACt                                                            <  2:2449431/91‑1 (MQ=255)

                                  aTTCAACTACTACTTTTATTACATTTTGTACAACATTAATATTTTTATCGAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGt                                                          >  2:3413289/1‑91 (MQ=255)

                                  aTTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTgg                                                          >  2:3839590/1‑90 (MQ=255)

                                    tCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCt                                                        >  2:111154/1‑91 (MQ=255)

                                     cAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCtt                                                       <  1:2568156/91‑1 (MQ=255)

                                        cTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAg                                                    <  1:1562021/91‑1 (MQ=255)

                                        cTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGCCTTAAg                                                    <  1:15540/91‑1 (MQ=255)

                                        cTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATATATCTTCCTTAGATAAATTAATATTTACTGTCTTAAg                                                    <  2:2552194/91‑1 (MQ=255)

                                         tAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGa                                                   <  2:1600431/91‑1 (MQ=255)

                                          aaTCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCATATTTATCTTCCTTAGATAAATTAATATTTACTGTCTtaataa                                                  >  2:3862423/1‑91 (MQ=255)

                                             ccTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACAt                                               >  1:2874825/1‑91 (MQ=255)

                                              cTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACAtt                                              >  2:1759298/1‑91 (MQ=255)

                                               ttttATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACAttt                                             >  1:787320/1‑91 (MQ=255)

                                                tttATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTg                                            <  1:670862/91‑1 (MQ=255)

                                                tttATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTg                                            <  1:3874553/91‑1 (MQ=255)

                                                tttATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTg                                            >  2:2010431/1‑91 (MQ=255)

                                                  tattaCTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTa                                          <  1:1545877/91‑1 (MQ=255)

                                                  tattaCTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTa                                          >  2:2159739/1‑91 (MQ=255)

                                                  tattaCTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTa                                          >  2:3054401/1‑91 (MQ=255)

                                                   attaCTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTaa                                         <  1:1131055/91‑1 (MQ=255)

                                                   attaCTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTaa                                         <  2:1050574/91‑1 (MQ=255)

                                                    ttaCTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTaaa                                        <  1:3472719/91‑1 (MQ=255)

                                                    ttaCTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTaaa                                        <  2:378036/91‑1 (MQ=255)

                                                    ttaCTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTaaa                                        <  2:2583877/91‑1 (MQ=255)

                                                    ttaCTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTaaa                                        <  2:2713781/91‑1 (MQ=255)

                                                       cTTTTTGTACAACATTAATATTTTTATCAAAATCGAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAg                                                    <  2:80807/76‑1 (MQ=255)

                                                       cTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAg                                     <  1:979929/91‑1 (MQ=255)

                                                        tttttGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGc                                    >  2:2061872/1‑91 (MQ=255)

                                                        tttttGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGc                                    <  1:3628989/91‑1 (MQ=255)

                                                        tttttGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGc                                    >  1:1368421/1‑91 (MQ=255)

                                                         ttttGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGct                                   <  1:2224288/91‑1 (MQ=255)

                                                         ttttGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGct                                   <  2:3692957/91‑1 (MQ=255)

                                                            tGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTg                                >  1:2282547/1‑91 (MQ=255)

                                                              tACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCa                              <  2:775690/91‑1 (MQ=255)

                                                                  acaTTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAacac                          <  1:1187855/91‑1 (MQ=255)

                                                                     ttAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTta                       <  1:1437577/91‑1 (MQ=255)

                                                                      tAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTtat                      >  1:1993645/1‑91 (MQ=255)

                                                                        atatTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAg                    <  2:2084920/91‑1 (MQ=255)

                                                                         tatTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGt                   >  1:1111457/1‑91 (MQ=255)

                                                                         tatTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGt                   >  2:43466/1‑91 (MQ=255)

                                                                           aagacagtaaatattAATTTATCTAAGGAAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGttt                 <  1:1590719‑M1/76‑1 (MQ=255)

                                                                            ttttATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTg                <  2:2731197/91‑1 (MQ=255)

                                                                             tttATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTgg               <  1:1721295/91‑1 (MQ=255)

                                                                              ttATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGt              >  1:1917227/1‑91 (MQ=255)

                                                                              ttATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGt              <  1:1732960/91‑1 (MQ=255)

                                                                               tATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTc             >  2:1879849/1‑91 (MQ=255)

                                                                                atcaaaatcaaaTTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCa            <  2:1959725/91‑1 (MQ=255)

                                                                                   aaatattAATTTATCTAAGGAAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAAt         <  1:553913‑M1/84‑1 (MQ=255)

                                                                                    aaatcaaaTTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAAtt        >  2:23002/1‑91 (MQ=255)

                                                                                    aaatcaaaTTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAAtt        <  1:2683244/91‑1 (MQ=255)

                                                                                      atcaaaTTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTcc      >  1:3185168/1‑91 (MQ=255)

                                                                                       tcaaaTTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCt     <  1:2343282/91‑1 (MQ=255)

                                                                                        caaaTTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCtt    <  2:2156096/91‑1 (MQ=255)

                                                                                         aaaTTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTa   <  2:1187478/91‑1 (MQ=255)

                                                                                          AATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTaa  <  2:3088400‑M1/91‑1 (MQ=255)

                                                                                          AATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTaa  >  1:3825977‑M1/1‑91 (MQ=255)

TAATTTAGTTGATTAAATTCTGAGTCGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTAA  >  USA300TCH1516_ALE/1933749‑1933929

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.