New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 1933839 =213 (1.120)10 (0.060) 7/142 NT 5.5% coding (1409/3816 nt) USA300HOU_RS09605 hypothetical protein
?USA300TCH1516_ALE 1933862 = 158 (0.940)coding (1386/3816 nt) USA300HOU_RS09605 hypothetical protein

Only 100 of 259 total aligned reads displayed.

GTCGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTAAATTTATTTACACAGTACTCACAC  >  USA300TCH1516_ALE/1933772‑1933952
                                                                                          |                                                                                          
gTCGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTa                                                                                            <  1:1986630/91‑1 (MQ=255)
 tCGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTaa                                                                                           >  1:2391599/1‑91 (MQ=255)
  cGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAat                                                                                          <  2:2890402/91‑1 (MQ=255)
  cGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAat                                                                                          >  2:1866534/1‑91 (MQ=255)
   gTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAata                                                                                         >  2:3101159/1‑91 (MQ=255)
    ttCATTAATTCAACTAATCCTTTTATTACTTTTTTTTCAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAatat                                                                                        >  2:3529220/1‑91 (MQ=255)
       aTTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAGATTTATCTTCCTTAGATAAATTAATATTTa                                                                                     <  2:1761074/91‑1 (MQ=255)
       aTTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTa                                                                                     <  1:3477689/91‑1 (MQ=255)
        ttAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTAc                                                                                    >  1:3762857/1‑91 (MQ=255)
         tAATTTAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACt                                                                                   <  1:2955466/91‑1 (MQ=255)
         tAATTCAACTAGTCCTTTTATTACTTTTTGTACAACATTAATCGTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACt                                                                                   <  2:1162228/91‑1 (MQ=255)
           aTTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGt                                                                                 >  1:3472207/1‑91 (MQ=255)
           aTTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGt                                                                                 <  1:3647396/91‑1 (MQ=255)
             tCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCt                                                                               >  2:111154/1‑91 (MQ=255)
              cAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCtt                                                                              <  1:2568189/91‑1 (MQ=255)
              aaactataagtgttgcagagctatttacaaatgttcttaagacagtaaatattaatttatcttccttagataaattAATATTTACTGTCtt                                                                              <  1:1590719‑M2/15‑1 (MQ=255)
                 cTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAg                                                                           <  1:1561761/91‑1 (MQ=255)
                 cTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATATATCTTCCTTAGATAAATTAATATTTACTGTCTTAAg                                                                           <  2:2552233/91‑1 (MQ=255)
                  tcaTCCTGTTATTACTTTTTGTACAACAGTGATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGa                                                                          <  2:539728/89‑1 (MQ=255)
                   aaTCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCATATTTATCTTCCTTAGATAAATTAATATTTACTGTCTtaataa                                                                         >  2:3862423/1‑91 (MQ=255)
                     tCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACa                                                                       >  1:1366933/1‑91 (MQ=255)
                       cTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACAtt                                                                     >  2:797170/1‑91 (MQ=255)
                         tttATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTg                                                                   >  2:2010431/1‑91 (MQ=255)
                         tttATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTg                                                                   <  1:3874553/91‑1 (MQ=255)
                           tgcagagctatttacaaatgttcttaagacagtaaatattAATTTATCTAAGGAAGATAAATTAATATTTACTGTCTTAAGAACATTTGTa                                                                 <  1:2902468‑M1/51‑1 (MQ=255)
                           tattaCTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTa                                                                 <  1:1545877/91‑1 (MQ=255)
                           tattaCTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTa                                                                 >  2:3054401/1‑91 (MQ=255)
                           tattaCTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTa                                                                 >  2:2159739/1‑91 (MQ=255)
                           tattaCTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTa                                                                 <  2:2849781/91‑1 (MQ=255)
                            attaCTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTaa                                                                <  1:1552710/91‑1 (MQ=255)
                            attaCTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTaa                                                                <  1:1131055/91‑1 (MQ=255)
                            attaCTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTaa                                                                <  2:2083481/91‑1 (MQ=255)
                             ttaCTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTaaa                                                               <  2:1601739/91‑1 (MQ=255)
                             ttaCTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTaaa                                                               <  2:378036/91‑1 (MQ=255)
                             ttaCTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTaaa                                                               <  2:2583877/91‑1 (MQ=255)
                               aCTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATa                                                             <  1:2251723/91‑1 (MQ=255)
                               aCTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATa                                                             <  1:2015412/91‑1 (MQ=255)
                                cTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAg                                                            >  1:1889370/1‑91 (MQ=255)
                                cTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAg                                                            >  2:1402300/1‑91 (MQ=255)
                                 tttttGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGc                                                           >  2:2061853/1‑91 (MQ=255)
                                  ttttGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGct                                                          <  1:2224288/91‑1 (MQ=255)
                                  ttttGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGct                                                          <  1:996713/91‑1 (MQ=255)
                                   tttGTACTTCATTAATATTTTTATCAAAATCATATTTATTTTCCTTAGATAAATTAATATTTACTGTCTTAAGATTATTTGTAAATAGctc                                                         <  2:3666447/91‑1 (MQ=255)
                                      gTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGc                                                      <  2:304833/91‑1 (MQ=255)
                                       tACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCa                                                     <  2:775690/91‑1 (MQ=255)
                                       tACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCa                                                     >  1:1038518/1‑91 (MQ=255)
                                        acaacaTTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCaa                                                    <  2:2669146/91‑1 (MQ=255)
                                          aacaTTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAaca                                                  <  2:1884252/91‑1 (MQ=255)
                                           acaTTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAacac                                                 <  1:1187855/91‑1 (MQ=255)
                                            caTTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACt                                                <  2:467362/91‑1 (MQ=255)
                                              ttAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTta                                              <  1:1437577/91‑1 (MQ=255)
                                               tAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTtat                                             <  2:1055546/91‑1 (MQ=255)
                                                  tatTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGt                                          >  2:3268938/1‑91 (MQ=255)
                                                   atTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGtt                                         >  1:1378621/1‑91 (MQ=255)
                                                     ttttATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTg                                       <  2:2730980/91‑1 (MQ=255)
                                                      tttATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTgg                                      <  1:1721295/91‑1 (MQ=255)
                                                       ttATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGt                                     <  1:1732960/91‑1 (MQ=255)
                                                       ttATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGt                                     <  1:1310862/91‑1 (MQ=255)
                                                        tATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTTTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTc                                    <  2:2149210/91‑1 (MQ=255)
                                                        cagtaaatattAATTTATCTAAGGAAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTc                                    <  1:1495615‑M1/80‑1 (MQ=255)
                                                         atcaaaatcaaaTTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCa                                   <  2:1959874/91‑1 (MQ=255)
                                                            aaatattAATTTATCTAAGGAAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAAt                                <  1:553913‑M1/84‑1 (MQ=255)
                                                             aaatcaaaTTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCCACACTTATAGTTTGGTCAAAtt                               >  2:24001/1‑91 (MQ=255)
                                                             aaatcaaaTTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAAtt                               >  2:23002/1‑91 (MQ=255)
                                                             aaatcaaaTTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAAtt                               <  1:2683244/91‑1 (MQ=255)
                                                               tattaatttatctaaggaagataaattAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTcc                             >  2:2475734‑M2/28‑91 (MQ=255)
                                                               atcaaaTTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTcc                             >  1:3185168/1‑91 (MQ=255)
                                                               atcaaaTTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTcc                             <  1:75012/91‑1 (MQ=255)
                                                                tcaaaTTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCt                            <  1:2343282/91‑1 (MQ=255)
                                                                tcaaaTTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCt                            >  2:397436/1‑91 (MQ=255)
                                                                  aaaTTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTa                          <  2:1187478/91‑1 (MQ=255)
                                                                    atttatctaaggaagataaattAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTaaa                        >  2:3404011‑M2/23‑91 (MQ=255)
                                                                    atttatctaaggaagataaattAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTaaa                        >  2:1932793‑M2/23‑91 (MQ=255)
                                                                     TTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACt                                                >  1:838252‑M1/1‑66 (MQ=255)
                                                                     TTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTAAat                       >  1:1262537‑M1/1‑91 (MQ=255)
                                                                     TTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTAAat                       >  1:3101159‑M1/1‑91 (MQ=255)
                                                                     TTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTAAat                       <  2:1035597‑M1/91‑1 (MQ=255)
                                                                     TTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTAAat                       <  1:72342‑M1/91‑1 (MQ=255)
                                                                     TTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTAAat                       <  2:262421‑M1/91‑1 (MQ=255)
                                                                      TTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTAAatt                      <  2:2471611‑M1/91‑1 (MQ=255)
                                                                      TTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTAAatt                      <  2:1598268‑M1/91‑1 (MQ=255)
                                                                        ATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTAAattta                    >  1:797170‑M1/1‑91 (MQ=255)
                                                                         TCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTAAatttat                   <  2:739449‑M1/91‑1 (MQ=255)
                                                                            tCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTAAAtttattta                <  2:2220668/91‑1 (MQ=255)
                                                                             ccTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAAt                                >  1:495427/1‑74 (MQ=255)
                                                                             ccTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTAAATTTATTTac               <  2:3503298/91‑1 (MQ=255)
                                                                             ccTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTAAATTTATTTac               >  1:2078381/1‑91 (MQ=255)
                                                                              cTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTAAATTTATTTaca              <  1:3814446/91‑1 (MQ=255)
                                                                               ttAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTAAATTTATTTacac             <  1:3835135/91‑1 (MQ=255)
                                                                               ttAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTAAATTTATTTacac             <  2:1745091/91‑1 (MQ=255)
                                                                                 agataaattAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTAAATTTATTTACACAg           <  2:587502‑M2/82‑1 (MQ=255)
                                                                                  gataaattAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTAAATTTATTTACACAGt          >  2:2384918‑M2/9‑91 (MQ=255)
                                                                                    taaattAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTAAATTTATTTACACAGTAc        >  2:1296153‑M2/7‑91 (MQ=255)
                                                                                     aaattAATATTTACTGTCTTAAGAACATTTGTAAATTGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTAAATTTATTTACACAGTACt       <  2:3832427‑M2/86‑1 (MQ=255)
                                                                                       attAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTAAATTTATTTACACAGTACTca     >  2:2194320‑M2/4‑91 (MQ=255)
                                                                                       attAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTAAATTTATTTACACAGTACTca     <  1:2589236‑M2/88‑1 (MQ=255)
                                                                                        ttAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTAAATTTATTTACACAGTACTcac    <  1:3213673‑M2/89‑1 (MQ=255)
                                                                                         tAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTAAATTTATTTACACAGTACTcaca   >  2:1363870‑M2/2‑91 (MQ=255)
                                                                                         tAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTAAATTTATTTACACAGTACTcaca   <  1:914488‑M2/90‑1 (MQ=255)
                                                                                          aaTATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTAAATTTATTTACACAGTACTcacac  <  1:3673520/91‑1 (MQ=255)
                                                                                          |                                                                                          
GTCGTTCATTAATTCAACTAATCCTTTTATTACTTTTTGTACAACATTAATATTTTTATCAAAATCAAATTTATCTTCCTTAGATAAATTAATATTTACTGTCTTAAGAACATTTGTAAATAGCTCTGCAACACTTATAGTTTGGTCAAATTCCTTAAATTTATTTACACAGTACTCACAC  >  USA300TCH1516_ALE/1933772‑1933952

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.