| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1970896 | 158 (0.830) | 19 (0.110) | 11/142 | NT | 11.4% | intergenic (+85/‑648) | USA300HOU_RS09825/USA300HOU_RS09830 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1970915 | 155 (0.920) | intergenic (+104/‑629) | USA300HOU_RS09825/USA300HOU_RS09830 | hypothetical protein/hypothetical protein | |||||
Only 100 of 315 total aligned reads displayed.
AAGTAGCAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATT > USA300TCH1516_ALE/1970806‑1970986 | ataaatatgatttaagcgaaaatcactacaaacaatgtcttcctataatttgtaaacataagttcatttgagttttaaaaaaGAGATGACa < 2:1819085‑M1/9‑1 (MQ=255)aaGTAGCAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACA > 1:466108‑M1/1‑91 (MQ=255)aaGTAGCAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACA > 2:836954‑M1/1‑91 (MQ=255)aaGTAGCAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACA > 1:1841579‑M1/1‑91 (MQ=255) aGTAGCAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACAt < 2:2290061/91‑1 (MQ=255) ggTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAAt > 2:3593288/1‑91 (MQ=255) gTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAAtt < 1:901236/91‑1 (MQ=255) tACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAg < 2:1349517/91‑1 (MQ=255) cGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGat < 2:3152591/91‑1 (MQ=255) gTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGata > 1:1614934/1‑91 (MQ=255) gaaaatcactacaaacaatgtcttcctataatttgtaaacataagttcatttgagttttaaaaaaGAGATGACA‑‑AGAAATTAGATATTTCt > 2:1590254‑M1/66‑91 (MQ=255) tcGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACAagaaatatctaatttcta < 1:3381779‑M1/91‑19 (MQ=255) tcGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTc > 2:2793527/1‑91 (MQ=255) tcGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTc > 1:2504635/1‑91 (MQ=255) atcactacaaacaatgtcttcctataatttgtaaacataagttcatttgagttttaaaaaaGAGATGACATTAGAAATTAGATATTTCTTg > 2:2346346‑M1/62‑91 (MQ=255) aTCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACAagaaatatctaatttctaatg < 2:1095907‑M1/91‑22 (MQ=255) aTCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTtg < 2:2404714‑M2/91‑3 (MQ=255) tcactacaaacaatgtcttcctataatttgtaaacataagttcatttgagttttaaaaaaGAGATGACATTAGAAATTAGATATTTCTTGt > 1:1520933‑M1/61‑91 (MQ=255) tCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACAagaaatatctaatttctaatgt < 2:36253‑M1/91‑23 (MQ=255) tCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACAagaaatatctaatttctaatgt < 1:622944‑M1/91‑23 (MQ=255) tCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTtgt < 1:1004794‑M2/91‑4 (MQ=255) cacaACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTtgtc > 1:845526‑M2/1‑87 (MQ=255) cacaACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTtgtc > 2:1111490‑M2/1‑87 (MQ=255) cacaACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTtgtc > 1:1096490‑M2/1‑87 (MQ=255) actacaaacaatgtcttcctataatttgtaaacataagttcatttgagttttaaaaaaGAGATGACA‑‑AGAAATTAGATATTTCTTGTCAtc > 1:932236‑M1/59‑91 (MQ=255) acaACTATTTTTATTAGTAATAGCATATGTATTTTTTAAAATTAAATGCCAAATATGCGAGATGACATTAGAAATTAGATATTTCTtgtca > 2:3599925‑M2/1‑86 (MQ=255) acaACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTtgtca > 1:2841553‑M2/1‑86 (MQ=255) acaACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTtgtca < 2:2386473‑M2/91‑6 (MQ=255) acaaacaatgtcttcctataatttgtaaacataagttcatttgagttttaaaaaaGAGATGACATTAGAAATTAGATATTTCTTGTCAtct > 2:2921278‑M1/56‑91 (MQ=255) aCTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTtgtcatct < 2:3300986‑M2/91‑9 (MQ=255) aCTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTtgtcatct < 2:2929256‑M2/91‑9 (MQ=255) cTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACAagaaatatctaatttctaatgtcatctc < 1:1692382‑M1/91‑29 (MQ=255) cTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACAagaaatatctaatttctaatgtcatctc < 2:3884326‑M1/91‑29 (MQ=255) cTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTtgtcatctc > 1:1786828‑M2/1‑82 (MQ=255) aaacaatgtcttcctataatttgtaaacataagttcatttgagttttaaaaaaGAGATGACATTAGAAATTAGATATTTCTTGTCATctct > 1:1150094‑M1/54‑91 (MQ=255) aaacaatgtcttcctataatttgtaaacataagttcatttgagttttaaaaaaGAGATAACATTAGAAATTAGATATTTCTTGTCATctct > 2:3807363‑M1/54‑91 (MQ=255) aTTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCtt < 1:277758/91‑1 (MQ=255) tttttATTAGTAACAGCATATTTATTTTTTAAGATTAAATGCCAAATATGCGAGATGACATTAGAAATTAGATACTTCTTGTCATCTCttt < 2:2820923/91‑1 (MQ=255) tttttATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCttt > 1:3676480/1‑91 (MQ=255) tttATTAGTAACAGCATATTTATTTTTTAATATTTTATGCCAAATAAAAGAGCTGACATTAGAAATTAGATATTTCTTGTCATCTCttttt > 2:176158/1‑91 (MQ=255) tttATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACAagaaatatctaatttctaatgtcatctcgttta < 1:2852845‑M1/91‑34 (MQ=255) tattaGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTGATCTCTTTTTTa > 2:3233231/1‑91 (MQ=255) tattaGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTa > 2:1983156/1‑91 (MQ=255) tattaGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTa > 1:1342699/1‑91 (MQ=255) attaGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTaa < 1:1650174/91‑1 (MQ=255) attaGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTaa < 2:10434/91‑1 (MQ=255) attaGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTaa < 2:3061197/91‑1 (MQ=255) ttaGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTaaa > 2:1640415/1‑91 (MQ=255) gTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACt > 1:963449/1‑91 (MQ=255) tAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTc < 2:33195/91‑1 (MQ=255) aaCAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCa < 1:2677363/91‑1 (MQ=255) aCAGCATATTTATTTTTTTAAATTAAATGCCAAATAAACGAGATGACATTAGAATTTAGATATTTCTTGTCATCTCTTTTTTAAAACTCaa > 1:873544/1‑91 (MQ=255) aCAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCaa > 2:744915/1‑91 (MQ=255) gCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATg < 1:258105/91‑1 (MQ=255) tatttattTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAAc > 1:3030929/1‑91 (MQ=255) tatttattTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAAc > 2:3646789/1‑91 (MQ=255) atttatttTTTAAAATTAAATGCCGAATAAACGAGATGACATTAGAAATTCGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACt < 2:3601250/91‑1 (MQ=255) atttatttTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACt > 1:1002561/1‑91 (MQ=255) atttatttTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACt > 2:2105107/1‑91 (MQ=255) tttatttTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACtt > 2:3005636/1‑91 (MQ=255) tttatttTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACtt < 1:2233542/91‑1 (MQ=255) tttatttTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACtt > 2:1147100/1‑91 (MQ=255) ttatttTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTa > 2:2394350/1‑91 (MQ=255) atttTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATg < 1:1235088/91‑1 (MQ=255) atttTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATg > 1:1026556/1‑91 (MQ=255) tttttAAAATTAAATGCCAAATAAACGAGATTACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCGAATGAACTTATGtt > 1:3499193/1‑91 (MQ=255) tttttAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGtt < 2:685415/91‑1 (MQ=255) ttttAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGttt < 2:2905479/91‑1 (MQ=255) tttAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTa < 2:2173423/91‑1 (MQ=255) ttAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTAc < 2:2517870/91‑1 (MQ=255) ttAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTAc < 1:1421491/91‑1 (MQ=255) ttAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTAc > 1:3157213/1‑91 (MQ=255) ttAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTAc < 1:2143248/91‑1 (MQ=255) tAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACa < 2:3499193/91‑1 (MQ=255) aaaTTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACaaa < 1:2648589/91‑1 (MQ=255) aaTTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAAt > 2:1060537/1‑91 (MQ=255) tAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGTACTTATGTTTACAAATtat > 2:530773/1‑91 (MQ=255) aTGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAgg > 2:635995/1‑91 (MQ=255) tGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGa > 1:763491/1‑91 (MQ=255) tGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGa > 2:3128951/1‑91 (MQ=255) ccAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAg < 2:2738118/91‑1 (MQ=255) ccAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAg > 1:2900377/1‑91 (MQ=255) tAAACGAGATGACATTAGAAATTAGATATTTCTtgtcatctcttttatttggcatttaattttaaaaaataaatatgctgttactaataaa < 1:3590471‑M2/91‑59 (MQ=255) gagaTGACAagaaatatctaatttctaatgtcatctcgtttatttggcatttaattttaaaaaataaatatgctgttactaataaaaatag > 1:459059‑M1/1‑9 (MQ=255) AGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACAttgtttgt < 1:854856‑M1/91‑1 (MQ=255) AGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACAttgtttgt < 2:2613322‑M1/91‑1 (MQ=255) gaTGACAagaaatatctaatttctaatgtcatctcgtttatttggcatttaattttaaaaaataaatatgctgttactaataaaaatagtt > 1:834406‑M1/1‑7 (MQ=255) gaTGACAagaaatatctaatttctaatgtcatctcgtttatttggcatttaattttaaaaaataaatatgctgttactaataaaaatagtt < 2:421224‑M1/91‑85 (MQ=255) GATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTa < 1:3184292‑M1/91‑1 (MQ=255) ATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAg < 2:1561961‑M1/91‑1 (MQ=255) gACAagaaatatctaatttctaatgtcatctcgtttatttggcatttaattttaaaaaataaatatgctgttactaataaaaatagttgtg > 2:2583519‑M1/1‑4 (MQ=255) GACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTg > 1:737279‑M1/1‑91 (MQ=255) aCAagaaatatctaatttctaatgtcatctcgtttatttggcatttaattttaaaaaataaatatgctgttactaataaaaatagttgtga < 1:680158‑M1/91‑89 (MQ=255) aCATTAGAAATTAGATATTTCTtgtcatctcgtttatttggcatttaattttaaaaaataaatatgctgttactaataaaaatagttgtga < 1:2165421‑M2/91‑70 (MQ=255) aCATTAGAAATTAGATATTTCTtgtcatctcgtttatttggcatttaattttaaaaaataaatatgctgttactaataaaaatagttgtga < 2:3317827‑M2/91‑70 (MQ=255) cAagaaatatctaatttctaatgtcatctcgtttatttggcatttaattttaaaaaataaatatgctgttactaataaaaatagttgtgat < 2:99117‑M1/91‑90 (MQ=255) CATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGAt < 1:1784660‑M1/91‑1 (MQ=255) CATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGAt < 2:2805311‑M1/91‑1 (MQ=255) aagaaatatctaatttctaatgtcatctcgtttatttggcatttaattttaaaaaataaatatgctgttactaataaaaatagttgtgatc > 1:2377698‑M1/1‑1 (MQ=255) ATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTagtgctt < 2:1471343‑M1/91‑4 (MQ=255) | AAGTAGCAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATT > USA300TCH1516_ALE/1970806‑1970986 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |