| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2154654 = | 166 (0.870) | 9 (0.050) | 6/146 | NT | 5.7% | coding (1023/1251 nt) | nrgA | Ammonium transporter NrgA |
| ? | USA300TCH1516_ALE | 2154684 = | 149 (0.860) | coding (993/1251 nt) | nrgA | Ammonium transporter NrgA | |||||
Only 100 of 228 total aligned reads displayed.
AATAATAAACGTCATGACTATACTAAAAATTACAACTGCTGTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCA > USA300TCH1516_ALE/2154564‑2154744 | aataatAAACGTCATGACTATACTAAAAATTACAACTGCTGTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTataaata < 2:1095678/91‑1 (MQ=255) taaaatatcatgatgcattagatgcatttggtattcatggtgttggtggtattattggtgctgttttaacagcagttttccaaagtaaaaa > 2:750345‑M1/90‑91 (MQ=255) taaaatatcatgatgcattagatgcatttggtattcatggtgttggtggtattattggtgctgttttaacagcagttttccaaagtaaaaa > 1:2589111‑M1/90‑91 (MQ=255) taataaACGTCATGACTATACTAAAAATTACAACTGCTGTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTAtaaataaa > 1:311484/1‑91 (MQ=255) aaaatatcatgatgcattagatgcatttggtattcatggtgttggtggtattattggtgctgttttaacagcagttttccaaagtaaaaaa > 1:1983987‑M1/89‑91 (MQ=255) aataaACGTCATGACTATACTAAAAATTACAACTGCTGTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAg > 2:2033708/1‑91 (MQ=255) aataaACGTCATGACTATACTAAAAATTACAACTGCTGTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAg > 2:1778074/1‑91 (MQ=255) aataaACGTCATGACTATACTAAAAATTACAACTGCTGTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAg > 1:1790202/1‑91 (MQ=255) aatatcatgatgcattggatgcatttggtattcatggtattggtggtattattggtgctgttttaacagcagttttccaaagtaaaAAAGc > 2:3708736‑M1/87‑91 (MQ=255) aatatcatgatgcattagatgcatttggtattcatggtgttggtggtattattggtgctgttttaacagcagttttccaaagtaaaAAAGc < 1:550396‑M1/5‑1 (MQ=255) taaACGTCATGACGATACTAAAAATTACAACTGCTGTTACACATAATATTGGTACAAGTACAATATGTATGTCACCAGTATAAATAAAGcc < 2:3194419/91‑1 (MQ=255) atatcatgatgcattagatgcatttggtattcaaggtgttggtggtattattggtgctgttttaacagcagttttccaaagtaaaAAAGcc < 1:578416‑M1/6‑1 (MQ=255) tatcatgatgcattagatgcatttggtattcatggtgttggtggtattattggtgctgttttaacagcagttttccaaagtaaaAAAGCCa > 1:3212993‑M1/85‑91 (MQ=255) aaaCGTCATGACTATACTAAAAATTACAACTGCTGTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCa > 1:1049759/1‑91 (MQ=255) aaCGTCATGACTATACTAAAAATTACAACTGCTGTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGCATAAATAAAGCCAt > 1:1844189/1‑91 (MQ=255) aCGTCATGACTATACTAAAAATTACAACTGCTGTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCAtt < 1:102642/91‑1 (MQ=255) cGTCATGACTATACTAAAAATTACAACTGCTGTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATtc < 2:3208302/91‑1 (MQ=255) cGTCATGACTATACTAAAAATTACAACTGCTGTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATtc > 2:1712313/1‑91 (MQ=255) tCATGACTATACTAAAAATTACAACTGCTGTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATtctc > 1:1121579/1‑91 (MQ=255) tGACTGTACTAAACCTGACAAATGGTGTTACACATTATATTTGTACAAGTATAAGTTGTATGTCACCAGTATAAATAAAGGCATTCTCAAt < 2:630468/91‑1 (MQ=255) tGACTATACTAAAAATTACAACTGCTGTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAAt < 1:1570359/91‑1 (MQ=255) aCTATACTAAAAATTACAACTGCTGTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGt < 2:2398907/91‑1 (MQ=255) aCTAAAAATTACAACTGCTGTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGa < 2:541997/91‑1 (MQ=255) aaaaaTTACAACTGCTGTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTg < 1:1825366/91‑1 (MQ=255) aaaaTTACAACTGCTGTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTgg > 2:1689342/1‑91 (MQ=255) aaaTTACAACTGCTGTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGc > 2:775705/1‑91 (MQ=255) aaTTACAACTGCTGTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCt < 2:2752895/91‑1 (MQ=255) aaTTACAACTGCTGTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCt > 1:1062339/1‑91 (MQ=255) ttggtattcatggtgttggtggtattattggtgctgttttaacagcagttttccaaagtaaaAAAGCCATTCTCAATGTCAGGATTGGCtt > 1:2540915‑M1/63‑91 (MQ=255) aTTACAACTGCTGTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCtt < 1:363682/91‑1 (MQ=255) aTTACAACTGCTGTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCtt < 2:2335414/91‑1 (MQ=255) aTTACAACTGCTGTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCtt < 1:1689342/91‑1 (MQ=255) ttACAACTGCTGTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAATCCATTCTCAATGTCAGGATTGGCttt < 2:2205223/91‑1 (MQ=255) ttACAACTGCTGTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCttt < 1:126354/91‑1 (MQ=255) ttACAACTGCTGTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCttt < 1:125678/91‑1 (MQ=255) ttACAACTGCTGTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCttt < 1:2124704/91‑1 (MQ=255) ttACAACTGCTGTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCttt < 2:2537677/91‑1 (MQ=255) ttACAACTGCTGTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCttt < 1:631381/91‑1 (MQ=255) tACAACTGCTGTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCtttt < 2:2825979/91‑1 (MQ=255) cAACTGCTGTTACACATAATATTTGTACAAGTGTAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTGAGGATTGGCtttttt < 1:3309437/91‑1 (MQ=255) aCTGCTGTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTAc > 1:812517/1‑91 (MQ=255) ctgctgTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACt < 1:2468775/91‑1 (MQ=255) tgctgTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACtt < 2:395819/91‑1 (MQ=255) gctgTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACttt < 2:2792263/91‑1 (MQ=255) gctgTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACttt > 1:765641/1‑91 (MQ=255) ctgTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTCTAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTg > 1:3080773/1‑91 (MQ=255) tgTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTgg > 2:1552913/1‑91 (MQ=255) gTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGa > 1:521388/1‑91 (MQ=255) gTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGa > 1:3430974/1‑91 (MQ=255) acacATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGaaaa < 2:1283083/91‑1 (MQ=255) acacATAATATTTGTACAAGTATAATATGTATGTCACCAGTAT‑AATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAAc < 1:851333/91‑1 (MQ=255) cacaTAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAAc < 1:3803829/91‑1 (MQ=255) cacaTAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAAc > 2:3013684/1‑91 (MQ=255) caTAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAActg < 1:2191892/91‑1 (MQ=255) caTAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAActg < 2:918047/91‑1 (MQ=255) caTAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAActg < 2:3032137/91‑1 (MQ=255) caTAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAActg < 2:3032427/91‑1 (MQ=255) ataataTTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAActgc < 1:434741/91‑1 (MQ=255) ataataTTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAActgc < 1:2265912/91‑1 (MQ=255) ataataTTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAActgc > 1:3724181/1‑91 (MQ=255) ataataTTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAActgc < 1:1400122/91‑1 (MQ=255) aataTTTGTACAAGTATAATATGTATGTCACCAGTATAAATAACGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAActgctg > 2:2993637/1‑91 (MQ=255) aataTTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAActgctg > 1:1231306/1‑91 (MQ=255) aataTTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAActgctg < 2:24388/91‑1 (MQ=255) aataTTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAActgctg > 1:150767/1‑91 (MQ=255) atatTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGt < 2:812621/91‑1 (MQ=255) atTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTa < 2:949874/91‑1 (MQ=255) ttGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGtttta < 2:1016385/91‑4 (MQ=255) tGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTaaaa < 1:455230/91‑1 (MQ=255) gTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAAc > 2:2222930/1‑91 (MQ=255) gTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAAc > 2:623128/1‑91 (MQ=255) aCAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAg < 2:236452/91‑1 (MQ=255) cgaGTATAATATGTGTGTCACCAGTATAGATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTTTAACAGc < 2:43743/89‑1 (MQ=255) aaGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTTTAACAGCa < 2:3425888/91‑1 (MQ=255) tataATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCa > 1:915389/1‑91 (MQ=255) taataTGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCaat > 1:3658828/1‑91 (MQ=255) aataTGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTa < 1:1153953/77‑1 (MQ=255) aataTGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTa > 2:1153967/1‑77 (MQ=255) atatGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCaataa > 1:943541/1‑91 (MQ=255) atgtatgtCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAataata > 2:338880/1‑91 (MQ=255) tatgtCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCGCCAATAATacca < 1:2981521/91‑1 (MQ=255) atgtCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATaccac < 1:2855136/91‑1 (MQ=255) atgtCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATaccac > 2:2874695/1‑91 (MQ=255) atgtCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATaccac < 2:860082/91‑1 (MQ=255) tCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTTGCCTTTTTACTTTGGAAAAAGGCTGTTAATACTGCACCAATAATACCACCaa < 1:2334104/91‑1 (MQ=255) aGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCa > 2:357230/1‑91 (MQ=255) gTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCAt > 1:2782382/1‑91 (MQ=255) gTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCAt > 1:2780753/1‑91 (MQ=255) tataAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATg > 2:1755422/1‑91 (MQ=255) ataaataaAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGa < 1:2069496/91‑1 (MQ=255) taaataaaGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGaa > 1:2222204/1‑91 (MQ=255) taaataaaGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGaa > 2:1672344/1‑91 (MQ=255) taaataaaGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGaa > 2:1896029/1‑91 (MQ=255) aaataaaGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGTAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAAt < 1:3868742/91‑1 (MQ=255) aaataaaGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAAt < 2:1374998/91‑1 (MQ=255) aataaaGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGTAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATa > 2:3777820/1‑91 (MQ=255) aataaaGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATa > 1:3162664/1‑91 (MQ=255) ataaaGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATAc < 2:3678796/91‑1 (MQ=255) taaaGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAACAcc > 1:3132695/1‑91 (MQ=255) AAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCa > 2:2919824‑M1/1‑91 (MQ=255) | AATAATAAACGTCATGACTATACTAAAAATTACAACTGCTGTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCA > USA300TCH1516_ALE/2154564‑2154744 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |