BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2154654 =	166 (0.870)	9 (0.050)	6/146	NT	5.7%	coding (1023/1251 nt)	nrgA	Ammonium transporter NrgA
*	?	USA300TCH1516_ALE	2154684 =	149 (0.860)	9 (0.050)	6/146	NT	5.7%	coding (993/1251 nt)	nrgA	Ammonium transporter NrgA

Only 100 of 210 total aligned reads displayed.

TACAACTGCTGTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCAAATGCATCTAATGCATCATGATATTTTAGT  >  USA300TCH1516_ALE/2154594‑2154774

ggtattcatggtgttggtggtattattggtgctgttttaacagcagttttccaaagtaaaAAAGCCATTCTCAATGTCAGGATTGGCtttt                                                                                            >  1:365394‑M1/61‑91 (MQ=255)

 gtattcatggtgttggtggtattattggtgctgttttaacagcagttttccaaagtaaaAAAGCCATTCTCAATGTCAGGATTGGCttttt                                                                                           >  1:2044078‑M1/60‑91 (MQ=255)

  cAACTGCTGTTACACATAATATTTGTACAAGTGTAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTGAGGATTGGCtttttt                                                                                          <  1:3309437/91‑1 (MQ=255)

      tgctgTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACtt                                                                                      <  2:395819/91‑1 (MQ=255)

       gctgTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACttt                                                                                     <  2:2788559/91‑1 (MQ=255)

       gctgTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACttt                                                                                     <  2:2792611/91‑1 (MQ=255)

       gctgTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACttt                                                                                     >  1:767146/1‑91 (MQ=255)

       gctgTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACttt                                                                                     >  1:765611/1‑91 (MQ=255)

         tgTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTgg                                                                                   >  2:1355031/1‑91 (MQ=255)

         tgTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTgg                                                                                   >  2:1552913/1‑91 (MQ=255)

          gTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGa                                                                                  >  1:521127/1‑91 (MQ=255)

          gTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGa                                                                                  >  1:3430974/1‑91 (MQ=255)

              cacaTAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAAc                                                                              >  2:3013684/1‑91 (MQ=255)

                caTAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAActg                                                                            <  2:3032137/91‑1 (MQ=255)

                caTAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAActg                                                                            <  1:2191892/91‑1 (MQ=255)

                caTAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAActg                                                                            <  1:3005535/91‑1 (MQ=255)

                caTAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAActg                                                                            <  2:918047/91‑1 (MQ=255)

                 ataataTTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAActgc                                                                           <  1:1400122/91‑1 (MQ=255)

                   aataTTTGTACAAGTATAATATGTATGTCACCAGTATAAATAACGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAActgctg                                                                         >  2:2993637/1‑91 (MQ=255)

                   aataTTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAActgctg                                                                         >  2:628727/1‑91 (MQ=255)

                   aataTTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAActgctg                                                                         >  1:150767/1‑91 (MQ=255)

                      atTTGTACGAGTATAATATGTATGTCAGCAGTATAAAGAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTa                                                                      <  2:3802927/91‑1 (MQ=255)

                      atTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTa                                                                      <  1:1251314/91‑1 (MQ=255)

                        ttGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGtttta                                                                    <  2:1016385/91‑4 (MQ=255)

                          gTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAAc                                                                  >  1:3780406/1‑91 (MQ=255)

                            aCAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAg                                                                >  2:1605443/1‑91 (MQ=255)

                             cAAGTATGATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGc                                                               <  1:1933261/91‑1 (MQ=255)

                              aaGTATAATATGTATGGCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTTTAACAGCa                                                              <  2:3425706/91‑1 (MQ=255)

                                 tataATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCa                                                           >  1:915389/1‑91 (MQ=255)

                                   taataTGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCaat                                                         >  1:3658828/1‑91 (MQ=255)

                                   taataTGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCaat                                                         <  2:2210398/91‑1 (MQ=255)

                                    aataTGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTa                                                                      >  2:1153953/1‑77 (MQ=255)

                                    aataTGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTa                                                                      <  1:1153967/77‑1 (MQ=255)

                                      tatgtatgTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCaataat                                                      >  2:575942/1‑91 (MQ=255)

                                      tatgtatgTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCaataat                                                      >  2:2279774/1‑91 (MQ=255)

                                       atgtatgtCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAataata                                                     >  1:3875621/1‑91 (MQ=255)

                                       atgtatgtCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAataata                                                     >  2:820030/1‑91 (MQ=255)

                                           atgtCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATaccac                                                 >  2:2874695/1‑91 (MQ=255)

                                           atgtCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATaccac                                                 <  2:860082/91‑1 (MQ=255)

                                           atgtCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATaccac                                                 <  1:2855136/91‑1 (MQ=255)

                                           atgtCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATaccac                                                 >  1:814764/1‑91 (MQ=255)

                                              tCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTTGCCTTTTTACTTTGGAAAAAGGCTGTTAATACTGCACCAATAATACCACCaa                                              <  1:2334104/91‑1 (MQ=255)

                                                  cAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACAcc                                          <  2:2403907/91‑1 (MQ=255)

                                                   aGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCa                                         >  2:357230/1‑91 (MQ=255)

                                                   aGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCa                                         >  1:1035322/1‑91 (MQ=255)

                                                   aGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCa                                         >  2:1826862/1‑91 (MQ=255)

                                                    gTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCAt                                        >  1:2780765/1‑91 (MQ=255)

                                                     tataAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGTATACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATg                                       >  2:1759476/1‑91 (MQ=255)

                                                     tataAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATg                                       >  2:1755398/1‑91 (MQ=255)

                                                     tataAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATg                                       <  2:801143/91‑1 (MQ=255)

                                                      ataaataaAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGa                                      <  1:2069496/91‑1 (MQ=255)

                                                      ataaataaAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGa                                      >  2:2439623/1‑91 (MQ=255)

                                                        aaataaaGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGTAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAAt                                    <  1:3868741/91‑1 (MQ=255)

                                                        aaataaaGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAAt                                    <  1:270719/91‑1 (MQ=255)

                                                        aaataaaGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAAt                                    >  1:3548947/1‑91 (MQ=255)

                                                        aaataaaGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAAt                                    >  1:535099/1‑91 (MQ=255)

                                                         aataaaGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATa                                   >  2:1260223/1‑91 (MQ=255)

                                                         aataaaGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATa                                   >  2:3777553/1‑91 (MQ=255)

                                                         aataaaGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATa                                   >  1:3162664/1‑91 (MQ=255)

                                                         aataaaGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATa                                   >  1:441291/1‑91 (MQ=255)

                                                          ataaaGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATAc                                  <  1:1713327/91‑1 (MQ=255)

                                                           taaaGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAACAcc                                 >  1:3132543/1‑91 (MQ=255)

                                                            AAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCa                                >  2:3023505‑M1/1‑91 (MQ=255)

                                                             aagccaatcctgacattgagaatggctttTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATTAATACCaa                               >  2:403380‑M2/30‑91 (MQ=255)

                                                             aagccaatcctgacattgagaatggctttTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCaa                               >  1:2540915‑M2/30‑91 (MQ=255)

                                                             aagccaatcctgacattgagaatggctttTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCaa                               >  1:906931‑M2/30‑91 (MQ=255)

                                                             AAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCaa                               >  1:2646046‑M1/1‑91 (MQ=255)

                                                              agccaatcctgacattgagaatggctttTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCaaa                              >  1:1067982‑M2/29‑91 (MQ=255)

                                                              AGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCaaa                              >  2:943541‑M1/1‑91 (MQ=255)

                                                              AGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCaaa                              <  2:3251308‑M1/91‑1 (MQ=255)

                                                               gccaatcctgacattgagaatggctttTTTACTTTGGGAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCAAAt                             >  1:1145888‑M2/28‑91 (MQ=255)

                                                               GCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCAAAt                             <  1:1300659‑M1/91‑1 (MQ=255)

                                                               GCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCAAAt                             <  1:2588847‑M1/91‑1 (MQ=255)

                                                               GCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCAAAt                             >  2:3109364‑M1/1‑91 (MQ=255)

                                                                 CATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCAAATGc                           <  2:3664794‑M1/91‑1 (MQ=255)

                                                                  ATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCAAATGCa                          <  2:662584‑M1/91‑1 (MQ=255)

                                                                   ttCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCAAATGCAt                         >  2:266673/1‑91 (MQ=255)

                                                                   atcctgacattgagaatggctttTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCAAATGCAt                         >  1:2232782‑M2/24‑91 (MQ=255)

                                                                     ctcAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCAAATGCATCt                       >  2:3335011/1‑91 (MQ=255)

                                                                     ctcAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCAAATGCATCt                       <  2:1679876/91‑1 (MQ=255)

                                                                     ctcAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCAAATGCATCt                       <  2:3724181/91‑1 (MQ=255)

                                                                     ctcAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTACTGTTAAACCAGCACCAATAATACCACCAACACCATGAATACCAAATGCATCt                       >  1:3098814/1‑91 (MQ=255)

                                                                       cAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCAAATGCATCTaa                     >  2:2722408/1‑91 (MQ=255)

                                                                       cAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCAAATGCATCTaa                     <  1:933637/91‑1 (MQ=255)

                                                                         aTGTCAGGATTGGCTTTTTTACTTTGTAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCAAATGCATCTAATg                   >  2:234470/1‑91 (MQ=255)

                                                                         aTGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCAAATGCATCTAATg                   >  2:3863855/1‑91 (MQ=255)

                                                                          tGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCAAATGCATCTAATGc                  <  1:2103900/91‑1 (MQ=255)

                                                                           gTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCAAATGCATCTAATGca                 >  2:463599/1‑91 (MQ=255)

                                                                             cAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCAAATGCATCTAATGcatc               <  2:719161/91‑1 (MQ=255)

                                                                               ggATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCAAATGCATCTAATGcatcat             <  1:1088080/91‑1 (MQ=255)

                                                                                gATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCAAATGCATCTAATGCATCATg            <  1:1607003/91‑1 (MQ=255)

                                                                                  ttGGCTTTTTTTCTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCAAATGCATCTAATGCATCATGat          >  2:2090399/1‑91 (MQ=255)

                                                                                   tggctttTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCAAATGCATCTAATGCATCATGata         >  1:3212993‑M2/8‑91 (MQ=255)

                                                                                    ggctttTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCAAATGCATCTAATGCATCATGatat        <  1:580074‑M2/85‑1 (MQ=255)

                                                                                     gctttTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCAAATGCATCTAATGCATCATGATAtt       <  1:550396‑M2/86‑1 (MQ=255)

                                                                                       tttTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCAAATGCATCTAATGCATCATGATAtttt     <  2:3691345‑M2/88‑1 (MQ=255)

                                                                                       tttTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCAAATGCATCTAATGCATCATGATAtttt     >  1:1983987‑M2/4‑91 (MQ=255)

                                                                                        ttTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCAAATGCATCTAATGCATCATGATATTTTa    >  2:750345‑M2/3‑91 (MQ=255)

                                                                                         tTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCAAATGCATCTAATGCATCATGATATTTTAg   <  2:2923938‑M2/90‑1 (MQ=255)

                                                                                          tttACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCAAATGCATCTAATGCATCATGATATTTTAGt  <  1:1260223/91‑1 (MQ=255)

TACAACTGCTGTTACACATAATATTTGTACAAGTATAATATGTATGTCACCAGTATAAATAAAGCCATTCTCAATGTCAGGATTGGCTTTTTTACTTTGGAAAACTGCTGTTAAAACAGCACCAATAATACCACCAACACCATGAATACCAAATGCATCTAATGCATCATGATATTTTAGT  >  USA300TCH1516_ALE/2154594‑2154774

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.