| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2440052 | 166 (0.870) | 16 (0.100) | 10/136 | NT | 9.2% | intergenic (+13/+53) | USA300HOU_RS12570/malP | hypothetical protein/PTS system maltose‑specific EIICB component |
| ? | USA300TCH1516_ALE | = 2440086 | 176 (1.090) | intergenic (+47/+19) | USA300HOU_RS12570/malP | hypothetical protein/PTS system maltose‑specific EIICB component | |||||
Only 100 of 285 total aligned reads displayed.
ACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTT > USA300TCH1516_ALE/2439962‑2440142 | aCGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC < 1:851529‑M1/91‑1 (MQ=255) gCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACg < 2:2889409/91‑1 (MQ=255) cAACTAGAAATATCGACATTCTATCTGCCAATTAGAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACga < 2:1775493/91‑1 (MQ=255) aCTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACgatg < 2:1513388/91‑1 (MQ=255) tAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC < 1:1025118‑M1/80‑1 (MQ=255) atatCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCGAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCAttt < 1:3102887/91‑1 (MQ=255) atatCGACATTCTATCTGCCAATTATAGATCGTCATCCATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCAttt > 1:3273151/1‑91 (MQ=255) tCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTAcc > 1:1904567/1‑90 (MQ=255) aCATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATg > 2:1323348/1‑91 (MQ=255) tCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCactatacgcaatcattgtaaatgatc < 2:1044276‑M1/91‑27 (MQ=255) tCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTg < 2:339918/91‑1 (MQ=255) tCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTg > 1:1873820/1‑91 (MQ=255) tCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTg < 1:2396234/91‑1 (MQ=255) cTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGc > 2:3029269/1‑91 (MQ=255) tATCTGCCAATTATAGATCGTCATCTATGAGCAAAGGTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCg < 2:3058830/91‑1 (MQ=255) cTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGtat > 1:3563015/1‑91 (MQ=255) cTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGtat > 1:2659857/1‑91 (MQ=255) cTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGtat > 1:2232682/1‑91 (MQ=255) gCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAg > 2:3237618/1‑91 (MQ=255) gCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAg > 2:3662149/1‑91 (MQ=255) aaTTATAGATCGTCATCTATGAGCACAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTga > 1:3596609‑M2/1‑89 (MQ=255) aaTTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTga > 1:3481118‑M2/1‑89 (MQ=255) aTTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgat < 1:1544997‑M2/91‑4 (MQ=255) ttATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATGAAAGACACATCTATACGATGATCATTCACAATGATTGCGTATAGTgatg < 2:2949542‑M2/91‑5 (MQ=255) ttATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatg > 1:1304948‑M2/1‑87 (MQ=255) tataGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgt > 1:2910794‑M2/1‑86 (MQ=255) ataGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCactatacgcaatcattgtaaatgatcatcgtatagatgtg < 1:625697‑M1/91‑41 (MQ=255) ataGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtg < 1:3144280‑M2/91‑7 (MQ=255) taGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAACGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgt < 1:3367896‑M2/91‑8 (MQ=255) aGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtc > 2:1164045‑M2/1‑83 (MQ=255) aGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtc < 2:3121790‑M2/91‑9 (MQ=255) gATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtct < 2:263853‑M2/91‑10 (MQ=255) cGTCATCTATGAGCAAAGCTCGTCTATCATAAAAAAAGACACATCactatgcgcaatcattgtaaatgatcatcgtatagatgtgtctttt < 2:3600526‑M1/91‑47 (MQ=255) tCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCtttttt < 2:1260480/91‑1 (MQ=255) tCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCtttttt < 2:138701/91‑1 (MQ=255) cATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCttttttt < 1:163893/91‑1 (MQ=255) cATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCttttttt < 1:2439039/91‑1 (MQ=255) tCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattat < 1:3623567‑M1/91‑52 (MQ=255) tCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGt < 1:1852273/91‑1 (MQ=255) tATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGtat > 1:2978467/1‑91 (MQ=255) aTGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGtatt < 1:1958564/91‑1 (MQ=255) aGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTattatt < 1:376876/91‑1 (MQ=255) aGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTattatt > 1:517493/1‑91 (MQ=255) cAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTAttattta > 2:2586175/1‑91 (MQ=255) cAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTAttattta < 2:1429129/91‑1 (MQ=255) aGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCt > 2:1005896/1‑91 (MQ=255) aGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCt > 2:2061792/1‑91 (MQ=255) gCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCtt < 2:3144280/91‑1 (MQ=255) gCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCtt > 2:619740/1‑91 (MQ=255) gCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCtt > 2:979244/1‑91 (MQ=255) gCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCtt > 1:1421571/1‑91 (MQ=255) ctcatataTCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTc > 2:1859077/5‑91 (MQ=255) cTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTc > 1:215261/1‑91 (MQ=255) cTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTc < 2:2475725/91‑1 (MQ=255) tCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCg > 1:3852720/1‑91 (MQ=255) tCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCg > 2:1804919/1‑91 (MQ=255) cGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCgg > 1:2609142/1‑91 (MQ=255) cGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCgg < 2:1123215/91‑1 (MQ=255) gTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGa > 2:480164/1‑91 (MQ=255) gTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGa > 2:1758696/1‑91 (MQ=255) gTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGa < 2:318026/91‑1 (MQ=255) gTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGa < 2:1412208/91‑1 (MQ=255) gTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGa < 2:889978/91‑1 (MQ=255) tataTCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGAc > 1:1762809/1‑91 (MQ=255) tataTCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGAc > 1:2591056/1‑91 (MQ=255) atatCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACg < 2:2257136/91‑1 (MQ=255) tCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGAtt < 2:1580692/91‑1 (MQ=255) tCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGAtt > 2:2362911/1‑91 (MQ=255) tCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGAtt < 2:1827345/91‑1 (MQ=255) tCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGAtt < 2:3800684/91‑1 (MQ=255) cATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTg > 1:3433252/1‑91 (MQ=255) ataataAAAGACACCTCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtcttttattatgatatacgagctttgctcataga < 2:3293522‑M2/91‑41 (MQ=255) aataaAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATc > 1:1438601/1‑91 (MQ=255) aaaaGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTc < 1:3031991/91‑1 (MQ=255) aaaaGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTc > 2:1742405/1‑91 (MQ=255) aaaaGACACATCTATACGATGATCATTTACAATGATTGCGCATAGTgatgtgtctttttttatgatctacgagctttgctcatagatgacg < 2:3600537‑M2/91‑46 (MQ=255) caagACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtcttttattatgatatacgagctttgctcatagatgacga < 2:1497792‑M2/90‑47 (MQ=255) aaaGACACATCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacga > 1:3213597‑M1/1‑11 (MQ=255) aaaGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtcttttattatgatatacgagctttgctcatagatgacga < 2:2722703‑M2/91‑47 (MQ=255) aaaGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCa > 1:1994631/1‑91 (MQ=255) aaaGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCa < 2:3172652/91‑1 (MQ=255) aGACACATCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacgatc < 2:815071‑M1/91‑83 (MQ=255) aGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAAc < 2:1343700/91‑1 (MQ=255) aGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAAc < 2:2659857/91‑1 (MQ=255) gACACATCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacgatct > 1:2892209‑M1/1‑8 (MQ=255) gACACATCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacgatct > 1:1296200‑M1/1‑8 (MQ=255) gACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAAcc > 2:2820048/1‑91 (MQ=255) acacATCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacgatcta > 2:3281027‑M1/1‑7 (MQ=255) acacATCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacgatcta < 1:377528‑M1/91‑85 (MQ=255) acacATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtcttttattatgatatacgagctttgctcatagatgacgctcta < 2:3351195‑M2/91‑51 (MQ=255) cacaTCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacgatctat > 2:3112784‑M1/1‑6 (MQ=255) cacaTCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCAt > 2:2178051/1‑91 (MQ=255) caTCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatttacgagctttgctcctagatgacgatctataa > 1:3320077‑M1/1‑4 (MQ=255) caTCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacgctctataa > 2:2420717‑M1/1‑4 (MQ=255) caTCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCAttt > 1:1383885/1‑91 (MQ=255) aTCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTg > 1:1123480/1‑91 (MQ=255) tCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtcttttattatgatatacgagctttgctcatagatgacgatctataatt < 2:1704961‑M2/91‑56 (MQ=255) cTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGtt > 1:1373370/1‑91 (MQ=255) cTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGtt < 1:3334171/91‑1 (MQ=255) cTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGtt > 1:2869978/1‑91 (MQ=255) | ACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTT > USA300TCH1516_ALE/2439962‑2440142 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |