BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2440052	166 (0.870)	16 (0.100)	10/136	NT	9.2%	intergenic (+13/+53)	USA300HOU_RS12570/malP	hypothetical protein/PTS system maltose‑specific EIICB component
*	?	USA300TCH1516_ALE	= 2440086	176 (1.090)	16 (0.100)	10/136	NT	9.2%	intergenic (+47/+19)	USA300HOU_RS12570/malP	hypothetical protein/PTS system maltose‑specific EIICB component

Only 100 of 239 total aligned reads displayed.

CAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATAC  >  USA300TCH1516_ALE/2439997‑2440175

 aaTTATAGATCGTCATCTATGAGCACAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTga                                                                                         >  1:3596609‑M2/1‑89 (MQ=255)

    tataGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgt                                                                                      >  1:3298207‑M2/1‑86 (MQ=255)

      taGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgt                                                                                    >  2:3281027‑M2/1‑84 (MQ=255)

       aGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtc                                                                                   >  2:964288‑M2/1‑83 (MQ=255)

       aGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtc                                                                                   >  1:1296200‑M2/1‑83 (MQ=255)

       aGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtc                                                                                   >  2:1164045‑M2/1‑83 (MQ=255)

       aGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtc                                                                                   >  1:2892209‑M2/1‑83 (MQ=255)

        gATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtct                                                                                  <  2:3046896‑M2/91‑10 (MQ=255)

           gacgatctaTGAGCAAAGCTCGTATATCATAATAAAAGACACATCTACACGATGATCATTTACAATGATTGCGTATAGTgatgtgtctttt                                                                               <  2:1831152‑M2/87‑13 (MQ=255)

             tCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCtttttt                                                                             <  2:138701/91‑1 (MQ=255)

              cATCTATGAGCAACGCTCGTATATCATAATAAAAGACACATCTGTACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCttttttt                                                                            <  1:3876803/91‑1 (MQ=255)

              cATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCttttttt                                                                            <  1:163893/91‑1 (MQ=255)

              cATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCttttttt                                                                            <  1:2439039/91‑1 (MQ=255)

                   aTGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGtatt                                                                       >  2:3123500/1‑91 (MQ=255)

                   aTGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTCtatt                                                                       >  1:3232772/1‑91 (MQ=255)

                        cAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTAttattta                                                                  >  2:2586175/1‑91 (MQ=255)

                          aaGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTAATATTTATc                                                                <  2:1763405/91‑1 (MQ=255)

                            gCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCtt                                                              >  1:1421571/1‑91 (MQ=255)

                            gCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCtt                                                              <  2:3144280/91‑1 (MQ=255)

                            gCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCtt                                                              >  2:619740/1‑91 (MQ=255)

                             cTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTc                                                             >  1:3004785/1‑91 (MQ=255)

                              tCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCg                                                            >  2:1804893/1‑91 (MQ=255)

                               catataTCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCgg                                                           <  1:1859077/89‑1 (MQ=255)

                               cGTATATCATAATAAAAGACACATCTATACGTTGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCgg                                                           <  2:3727921/91‑1 (MQ=255)

                               cGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCgg                                                           >  1:2609142/1‑91 (MQ=255)

                               cGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCgg                                                           >  1:3772849/1‑91 (MQ=255)

                                gTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGa                                                          >  2:480164/1‑91 (MQ=255)

                                gTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGa                                                          <  2:1412208/91‑1 (MQ=255)

                                gTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGa                                                          >  2:3298563/1‑91 (MQ=255)

                                 tataTCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGAc                                                         >  1:1762809/1‑91 (MQ=255)

                                     tCATAATAAAAGACATATCTATACGTCGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGAtt                                                     <  2:3356888/91‑1 (MQ=255)

                                     tCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGAtt                                                     <  2:1827139/91‑1 (MQ=255)

                                      cATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTg                                                    >  1:3433252/1‑91 (MQ=255)

                                       ataataAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtcttttattatgatatacgagctttgctcataga                                                   <  1:3623567‑M2/91‑41 (MQ=255)

                                       ataataAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtcttttattatgatatacgagctttgctcataga                                                   <  1:523455‑M2/91‑41 (MQ=255)

                                       ataataAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGa                                                   >  1:978371/1‑91 (MQ=255)

                                         aataaAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATc                                                 >  2:269501/1‑91 (MQ=255)

                                           taaAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCt                                               >  1:3137989/1‑91 (MQ=255)

                                            aaaaGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTc                                              >  2:1742405/1‑91 (MQ=255)

                                            aaaaGACACATCTATACGATGATCATTTACAATGATTGCGCATAGTgatgtgtctttttttatgatctacgagctttgctcatagatgacg                                              <  2:3600537‑M2/91‑46 (MQ=255)

                                             caagACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtcttttattatgatatacgagctttgctcatagatgacga                                             <  2:1497792‑M2/90‑47 (MQ=255)

                                             aaaGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCa                                             <  2:3172857/91‑1 (MQ=255)

                                              aaGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCaa                                            <  1:3050917/91‑1 (MQ=255)

                                               aGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAAc                                           <  2:1422728/91‑1 (MQ=255)

                                               aGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAAc                                           <  2:2289673/91‑1 (MQ=255)

                                               aGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAAc                                           <  2:1343700/91‑1 (MQ=255)

                                                gACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAAcc                                          >  2:2819640/1‑91 (MQ=255)

                                                 acacATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCa                                         >  1:1124498/1‑91 (MQ=255)

                                                 acacATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCa                                         >  1:2648031/1‑91 (MQ=255)

                                                  cacaTCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtcttttattatgatatacgagctttgctcatagatgacgatctat                                        <  1:625697‑M2/91‑52 (MQ=255)

                                                  cacaTCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTCTTATTTATCTTCGGACGATTGATCCTCAAccct                                        >  2:1532000/1‑89 (MQ=255)

                                                  cacaTCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGGTTGATCCTCAACCAt                                        <  2:1904567/91‑1 (MQ=255)

                                                  cacaTCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCAt                                        >  2:3195826/1‑91 (MQ=255)

                                                   acaTCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCAtt                                       >  2:2643338/1‑91 (MQ=255)

                                                    caTCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCAttt                                      >  1:1383885/1‑91 (MQ=255)

                                                     aTCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTg                                     <  1:835335/91‑1 (MQ=255)

                                                     aTCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTg                                     >  2:218981/1‑91 (MQ=255)

                                                      tCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtcttttattatgatatacgagctttgctcatagatgacgatctataatt                                    <  2:1704961‑M2/91‑56 (MQ=255)

                                                       cTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGtt                                   <  1:3334171/91‑1 (MQ=255)

                                                       cTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGtt                                   >  2:2386199/1‑91 (MQ=255)

                                                       cTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGtt                                   >  1:2869978/1‑91 (MQ=255)

                                                       cTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGtt                                   >  1:1373370/1‑91 (MQ=255)

                                                        tataCGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTc                                  >  2:234799/1‑91 (MQ=255)

                                                        tataCGATAAACATATACAAAGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACAATTTGTTc                                  >  2:1297542/1‑91 (MQ=255)

                                                         ataCGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTgaaca                                 <  1:2048899/91‑5 (MQ=255)

                                                         ataCGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTgaaca                                 <  1:3029269/91‑5 (MQ=255)

                                                         ataCGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCa                                 >  2:1444917/1‑91 (MQ=255)

                                                           aCGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCaaa                               <  2:795435/91‑1 (MQ=255)

                                                            cGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAAt                              >  2:823747/1‑91 (MQ=255)

                                                             gatgatCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATg                             <  2:3232772/91‑1 (MQ=255)

                                                              atgatCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGc                            <  1:218981/91‑1 (MQ=255)

                                                               tgatCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCt                           <  1:2386199/91‑1 (MQ=255)

                                                                gatCATTTACAATGATTGCGTATAGTgatgtgtcttttattatgatatacgagctttgctcatagatgacgatctataattggcagataga                          <  2:1044276‑M2/91‑66 (MQ=255)

                                                                gatCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCtt                          <  1:2598820/91‑1 (MQ=255)

                                                                 atCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTc                         >  2:2123721/1‑91 (MQ=255)

                                                                  tCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCa                        <  2:1231572/91‑1 (MQ=255)

                                                                  tCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCa                        <  1:2011661/91‑1 (MQ=255)

                                                                  tCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCa                        <  1:550860/91‑1 (MQ=255)

                                                                  tCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCa                        >  2:1654520/1‑91 (MQ=255)

                                                                   cATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCAc                       >  1:257299/1‑91 (MQ=255)

                                                                    aTTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACg                      <  1:1005896/91‑1 (MQ=255)

                                                                    aTTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACg                      <  1:1580427/91‑1 (MQ=255)

                                                                     tttACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGa                     >  2:2466311/1‑91 (MQ=255)

                                                                      ttACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGaa                    >  2:1065437/1‑91 (MQ=255)

                                                                      ttACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGaa                    >  1:3675823/1‑91 (MQ=255)

                                                                      ttACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGaa                    <  1:1451647/91‑1 (MQ=255)

                                                                       tACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAAc                   >  1:1973090/1‑91 (MQ=255)

                                                                       gtaaaTGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAAc                   >  1:170340/4‑91 (MQ=255)

                                                                        taaaTGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGCTCCTCAACCATTTGTTCAAATGCTTCACGAACt                  >  1:3185283/3‑91 (MQ=255)

                                                                            tGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTtgtg              <  1:1543263/91‑1 (MQ=255)

                                                                             gATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTgg             >  2:3007174/1‑91 (MQ=255)

                                                                             gATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTgg             >  1:2143186/1‑91 (MQ=255)

                                                                               ttGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTa           >  2:2728593/1‑91 (MQ=255)

                                                                                tGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTAc          <  1:3435347/91‑1 (MQ=255)

                                                                                   gTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTg        >  1:808003/1‑90 (MQ=255)

                                                                                    tataGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTc      >  1:3574907/1‑91 (MQ=255)

                                                                                    tataGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTc      <  2:2620836/91‑1 (MQ=255)

                                                                                       aGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATa   >  1:465143/1‑91 (MQ=255)

                                                                                       aGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGCTACTGTCATa   >  2:2340993/1‑91 (MQ=255)

                                                                                        gTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATAc  >  1:3744192/1‑91 (MQ=255)

CAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATAC  >  USA300TCH1516_ALE/2439997‑2440175

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.