BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2467825 =	221 (1.160)	20 (0.110)	14/150	NT	9.3%	intergenic (+42/+66)	USA300HOU_RS12705/lipY	hypothetical protein/Triacylglycerol lipase
*	?	USA300TCH1516_ALE	2467878 =	185 (1.040)	20 (0.110)	14/150	NT	9.3%	intergenic (+95/+13)	USA300HOU_RS12705/lipY	hypothetical protein/Triacylglycerol lipase

Only 100 of 285 total aligned reads displayed.

CACACATATCAATACACTTATTGGTGATTTTCACTCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCA  >  USA300TCH1516_ALE/2467735‑2467915

cacacaTATCAATACACTTATTGGTGATTTTCACTCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAaaaacaaaa                                                                                            <  2:1452773/91‑1 (MQ=255)

 acacaTATCAATACACTTATTGGTGATTTTCACTCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAaaaacaaaac                                                                                           <  1:2711589/91‑1 (MQ=255)

 acacaTATCAATACACTTATTGGTGATTTTCACTCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAaaaacaaaac                                                                                           >  2:2386339/1‑91 (MQ=255)

 acacaTATCAATACACTTATTGGTGATTTTCACTCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAaaaacaaaac                                                                                           <  2:1864071/91‑1 (MQ=255)

  ccaattagacaatcacataaagctattaaacaaattgccaaatcgatagatgaggatgtaacacaaaataactaataacatataaatgAcc                                                                                          <  2:2061456‑M1/3‑1 (MQ=255)

  ccaattagacaatcacataaagctattaaacaaattgccaaatcgatagatgaggatgtaacacaaaataactaataacatataaatgAcc                                                                                          >  1:1728656‑M1/89‑91 (MQ=255)

   acaTATCAATACACTTATTGGTGATTTTCACTCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCGAAAACAAAAccc                                                                                         <  1:2988166/91‑1 (MQ=255)

   acaTATCAATACACTTATTGGTGATTTTCACTCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACACAAccc                                                                                         >  2:3575671/1‑91 (MQ=255)

    caTATCAATACACTTATTGGTGATTTTCACTCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCa                                                                                        <  2:2862676/91‑1 (MQ=255)

    aattagacaatcacataaagctattaaacaaattgccaaatcgatagatgaggatgtaacacaaaataactaataacatataaatgACCCa                                                                                        >  2:3329917‑M1/87‑91 (MQ=255)

      tatCAATACACTTATTGGTGATTTTCACTCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAAt                                                                                      <  2:1998614/91‑1 (MQ=255)

      tatCAATACACTTATTGGTGATTTTCACTCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAAt                                                                                      <  2:1104863/91‑1 (MQ=255)

       atCAATACACTTATTGGTGATTTTCACTCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAAtt                                                                                     >  2:779970/1‑91 (MQ=255)

        tCAATACACTTATTGGTGATTTTCACTCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTa                                                                                    >  1:1703880/1‑91 (MQ=255)

         cAATACACTTATTGGTGATTTTCACTCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTAc                                                                                   >  1:1460686/1‑91 (MQ=255)

          aaTACACTTATTGGTGATTTTCACTCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACg                                                                                  <  1:2014189/91‑1 (MQ=255)

           aTACACTTATTGGTGATTTTCACTCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGt                                                                                 >  2:1958736/1‑91 (MQ=255)

           aTACACTTATTGGTGATTTTCACTCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGt                                                                                 <  1:748236/91‑1 (MQ=255)

                cTTATTGGTGATTTTCACTCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAACACAAAACCCAATTACGTTTTCa                                                                            >  2:3129192/1‑91 (MQ=255)

                 ttATTGGTGATTTTCACTCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCAt                                                                           >  2:854127/1‑91 (MQ=255)

                  tATTGGTGATTTTCACTCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATg                                                                          <  1:1644778/91‑1 (MQ=255)

                  tATTGGTGATTTTCACTCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATg                                                                          >  1:3676874/1‑91 (MQ=255)

                    ttGGTGATTTTCACTCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTc                                                                        >  2:3377494/1‑91 (MQ=255)

                     tGGTGATTTTCACTCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCa                                                                       <  2:981445/91‑1 (MQ=255)

                      ggTGATTTTCACTCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCaa                                                                      >  2:285397/1‑91 (MQ=255)

                      ggTGATTTTCACTCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCaa                                                                      <  2:392876/91‑1 (MQ=255)

                        tGATTTTCACTCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAat                                                                    >  1:410625/1‑91 (MQ=255)

                          aTTTTCACTCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAatat                                                                  >  2:234678/1‑91 (MQ=255)

                          aTTTTCACTCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAatat                                                                  <  2:244857/91‑1 (MQ=255)

                           ttttCACTCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATatc                                                                 <  1:1811952/91‑1 (MQ=255)

                             ttCACTCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATatcat                                                               >  1:3718644/1‑91 (MQ=255)

                               cACTCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCt                                                             <  2:1554465/91‑1 (MQ=255)

                               cACTCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCt                                                             <  1:2079312/91‑1 (MQ=255)

                                aCTCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCtt                                                            >  2:1676723/1‑91 (MQ=255)

                                  tCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGc                                                          <  2:1082857/91‑1 (MQ=255)

                                  tCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGc                                                          <  1:957335/91‑1 (MQ=255)

                                  tCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGc                                                          <  1:1477943/91‑1 (MQ=255)

                                   cAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCa                                                         >  2:52694/1‑91 (MQ=255)

                                   attgccaaatcgatagatgaggatgtaacacaaaataactaataacatataaatgACCCAGTTACGATTTCATGTCAAATATCATCTTGCa                                                         >  2:1785305‑M1/56‑91 (MQ=255)

                                     gAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATg                                                       >  1:3370448/1‑91 (MQ=255)

                                       ccaaatcgatagatgaggatgtaacacaaaataactaataacatataaatgACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGaa                                                     <  2:3053127‑M1/40‑1 (MQ=255)

                                       aGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGaa                                                     >  1:491266/1‑91 (MQ=255)

                                       aGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGaa                                                     >  1:918981/1‑91 (MQ=255)

                                         cTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAAt                                                   <  2:1229018/91‑1 (MQ=255)

                                         aaatcgatagatgaggatgtaacacaaaataactaataacatataaatgACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAAt                                                   >  1:1889961‑M1/50‑91 (MQ=255)

                                         aaatcgatagatgaggatgtaacacaaaataactaataacatataaatgACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAAt                                                   >  1:3053127‑M1/50‑91 (MQ=255)

                                          tCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATc                                                  <  1:558560/91‑1 (MQ=255)

                                           cATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCg                                                 >  2:3184870/1‑91 (MQ=255)

                                            aTTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGt                                                <  1:61158/91‑1 (MQ=255)

                                            aTTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGt                                                >  1:1088324/1‑91 (MQ=255)

                                             ttAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTa                                               >  2:3709755/1‑91 (MQ=255)

                                               aaCAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAAc                                             <  1:2290314/91‑1 (MQ=255)

                                               aaCAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAAc                                             >  1:1105429/1‑91 (MQ=255)

                                                tagatgaggatgtaacacaaaataactaataacatataaatgACCCAATTACGTTTTCATGTCAAATATCATCTTGc                                                          <  1:3265171‑M1/35‑1 (MQ=255)

                                                aCAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACt                                            <  2:2215140/91‑1 (MQ=255)

                                                   aTTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTggg                                         <  1:3618120/91‑1 (MQ=255)

                                                      aggatgtaacacaaaataactaataacatataaatgACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCa                                      >  2:1578762‑M1/37‑91 (MQ=255)

                                                      aGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCa                                      <  2:3748928/91‑1 (MQ=255)

                                                        tCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCAtt                                    >  1:2402472/1‑91 (MQ=255)

                                                         cTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAGCTGGGTCAttt                                   <  2:1758917/91‑1 (MQ=255)

                                                         cTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGt                                        >  2:1414172/1‑86 (MQ=255)

                                                         cTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCAttt                                   >  2:1208416/1‑91 (MQ=255)

                                                         cTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCAttt                                   <  2:3503089/91‑1 (MQ=255)

                                                         cTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCAttt                                   >  2:3636987/1‑91 (MQ=255)

                                                          tatataACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTta                                  <  1:3427453/91‑1 (MQ=255)

                                                            taacacaaaataactaataacatataaatgACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTtata                                >  2:152607‑M1/31‑91 (MQ=255)

                                                             ataACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTatat                               >  1:871838/1‑91 (MQ=255)

                                                              taACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATg                              >  2:703329/1‑91 (MQ=255)

                                                                aCCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGtt                            <  2:1637214/91‑1 (MQ=255)

                                                                aCCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGtt                            >  2:2684916/1‑91 (MQ=255)

                                                                aCCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGtt                            >  2:2456335/1‑91 (MQ=255)

                                                                aCCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGtt                            <  1:2144049/91‑1 (MQ=255)

                                                                 cccTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGtta                           >  1:3538733/1‑91 (MQ=255)

                                                                 cccTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGtta                           <  1:3212/91‑1 (MQ=255)

                                                                   cTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGttatt                         >  1:2572758/1‑91 (MQ=255)

                                                                   cTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGttatt                         <  2:132288/91‑1 (MQ=255)

                                                                     tGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAg                       <  1:1406269/91‑1 (MQ=255)

                                                                      gCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGt                      >  2:1019685/1‑91 (MQ=255)

                                                                       cTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGtt                     <  1:2756222/91‑1 (MQ=255)

                                                                       cTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGtt                     <  2:1268030/91‑1 (MQ=255)

                                                                        tataTTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTa                    >  1:794723/1‑91 (MQ=255)

                                                                        tataTTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTa                    >  2:1468534/1‑91 (MQ=255)

                                                                        tataTTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTa                    >  1:1536079/1‑91 (MQ=255)

                                                                        tataTTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTa                    <  1:2939537/91‑1 (MQ=255)

                                                                          tatTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTAtt                  <  1:1341785/91‑1 (MQ=255)

                                                                          tatTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTAtt                  >  1:2916608/1‑91 (MQ=255)

                                                                                cAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTgtgt            >  1:2009498/1‑91 (MQ=255)

                                                                                cAAAAACAAAACACAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTctgt            >  1:3003067/1‑91 (MQ=255)

                                                                                  aaaacaaaacCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTa          >  1:385572/1‑91 (MQ=255)

                                                                                   aaacaaaacCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTAc         >  1:2339634/1‑91 (MQ=255)

                                                                                    aacaaaacCCAATTACGTTTTCATATCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACa        <  2:3607274/91‑1 (MQ=255)

                                                                                     acaaaacCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACAt       >  1:2802116/1‑91 (MQ=255)

                                                                                     acaaaacCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACAt       >  1:2478203/1‑91 (MQ=255)

                                                                                      caaaacCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATc      >  2:3840324/1‑91 (MQ=255)

                                                                                         aacCCAATTACGTTTTCATGTCAAATATCCTCTTGCATGAAATCGTAACTGGGTCATTTATATGTCATTAGTTATTTTGTGTTACACCCTc   >  1:1501777/1‑91 (MQ=255)

                                                                                         aacCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTc   >  1:1280619/1‑91 (MQ=255)

                                                                                          ACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCa  >  2:2618081‑M1/1‑91 (MQ=255)

                                                                                          ACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCa  <  1:3163112‑M1/91‑1 (MQ=255)

                                                                                          ACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCa  <  1:1318377‑M1/91‑1 (MQ=255)

                                                                                          ACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTATTACATCCTCa  <  2:1825962‑M1/91‑1 (MQ=255)

CACACATATCAATACACTTATTGGTGATTTTCACTCAGAAGCTCATTAACAATTAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCA  >  USA300TCH1516_ALE/2467735‑2467915

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.