BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2467825 =	221 (1.160)	20 (0.110)	14/150	NT	9.3%	intergenic (+42/+66)	USA300HOU_RS12705/lipY	hypothetical protein/Triacylglycerol lipase
*	?	USA300TCH1516_ALE	2467878 =	185 (1.040)	20 (0.110)	14/150	NT	9.3%	intergenic (+95/+13)	USA300HOU_RS12705/lipY	hypothetical protein/Triacylglycerol lipase

Only 100 of 285 total aligned reads displayed.

TAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGATTTGGCAATTTGTTTAATAGCTTTATGTGATTGTCTAATTGGATA  >  USA300TCH1516_ALE/2467788‑2467968

tAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTc                                                                                            <  2:3088605/91‑1 (MQ=255)

gaggatgtaacacaaaataactaataacatataaatgACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTc                                                                                            >  2:1816522‑M1/38‑91 (MQ=255)

 aGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCa                                                                                           <  2:3750583/91‑1 (MQ=255)

   tCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCAtt                                                                                         >  2:1453925/1‑91 (MQ=255)

   tCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCAtt                                                                                         >  1:2402472/1‑91 (MQ=255)

    cTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAGCTGGGTCAttt                                                                                        <  2:1758917/91‑1 (MQ=255)

    cTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCAttt                                                                                        >  2:1208828/1‑91 (MQ=255)

    cTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCAttt                                                                                        >  2:3636987/1‑91 (MQ=255)

        ataACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTatat                                                                                    >  1:871838/1‑91 (MQ=255)

           aCCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGtt                                                                                 <  2:1637324/91‑1 (MQ=255)

           aCCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGtt                                                                                 <  1:2144049/91‑1 (MQ=255)

           aCCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGtt                                                                                 >  2:2455782/1‑91 (MQ=255)

              cTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGttatt                                                                              >  2:2376872/1‑91 (MQ=255)

              cTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGttatt                                                                              >  1:2572758/1‑91 (MQ=255)

                tGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAg                                                                            <  1:2313144/91‑1 (MQ=255)

                 gCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGt                                                                           <  2:1415772/91‑1 (MQ=255)

                 gCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGt                                                                           >  2:1019685/1‑91 (MQ=255)

                  cTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGtt                                                                          <  2:1268030/91‑1 (MQ=255)

                  cTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGtt                                                                          <  2:1088324/91‑1 (MQ=255)

                  cTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGtt                                                                          >  1:2405582/1‑91 (MQ=255)

                  cTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGtt                                                                          <  1:2756222/91‑1 (MQ=255)

                  cTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGtt                                                                          <  1:477580/91‑1 (MQ=255)

                   tataTTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTa                                                                         >  1:1696112/1‑91 (MQ=255)

                   tataTTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTa                                                                         <  1:2939550/91‑1 (MQ=255)

                   tataTTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTa                                                                         >  1:794723/1‑91 (MQ=255)

                   tataTTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTa                                                                         >  1:1534410/1‑91 (MQ=255)

                     tatTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTAtt                                                                       >  1:2916963/1‑91 (MQ=255)

                     tatTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTAtt                                                                       >  2:1308217/1‑91 (MQ=255)

                     tatTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTAtt                                                                       <  2:1938314/91‑1 (MQ=255)

                      atTTTCAAAAACAAAACCCAATTACGATTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTAttt                                                                      >  2:1483465/1‑91 (MQ=255)

                        tttCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTtg                                                                    <  1:94072/91‑1 (MQ=255)

                        tttCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTtg                                                                    <  1:1824618/91‑1 (MQ=255)

                           cAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTgtgt                                                                 <  1:2720922/91‑1 (MQ=255)

                           cAAAAACAAAACACAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTctgt                                                                 >  1:3003067/1‑91 (MQ=255)

                            aaaaaCAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGtt                                                                <  2:2647521/91‑1 (MQ=255)

                             tataaatgacccagttacgatttcatgcaagatgatatttgacatgaaaacgtaattgggtCATTTATATGTTATTAGTTATTTTGTGTTa                                                               >  2:152607‑M2/62‑91 (MQ=255)

                             aaaacaaaacCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTa                                                               <  1:1348841/91‑1 (MQ=255)

                               aacaaaacCCAATTACGTTTTCATATCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACa                                                             <  2:3607274/91‑1 (MQ=255)

                                acaaaacCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACAt                                                            >  1:2478203/1‑91 (MQ=255)

                                 caaaacCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATc                                                           >  2:3838918/1‑91 (MQ=255)

                                   tgacccagttacgatttcatgcaagatgatatttgacatgaaaacgtaattgggtCATTTATATGTTATTAGTTATTTTGTGTTACATCCt                                                         >  2:1578762‑M2/56‑91 (MQ=255)

                                    aacCCAATTACGTTTTCATGTCAAATATCCTCTTGCATGAAATCGTAACTGGGTCATTTATATGTCATTAGTTATTTTGTGTTACACCCTc                                                        >  1:1501777/1‑91 (MQ=255)

                                    aacCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTc                                                        >  1:1280619/1‑91 (MQ=255)

                                     ACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCa                                                       <  1:346816‑M1/91‑1 (MQ=255)

                                     ACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCa                                                       <  1:1318377‑M1/91‑1 (MQ=255)

                                     ACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTATTACATCCTCa                                                       <  2:1825962‑M1/91‑1 (MQ=255)

                                      CCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCAt                                                      <  2:37199‑M1/91‑1 (MQ=255)

                                      CCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCAt                                                      <  2:1375498‑M1/91‑1 (MQ=255)

                                      CCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCAt                                                      <  2:2181336‑M1/91‑1 (MQ=255)

                                       CCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATc                                                     <  1:2858126‑M1/91‑1 (MQ=255)

                                        CAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCt                                                    >  2:3370448‑M1/1‑91 (MQ=255)

                                        CAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCt                                                    >  1:1237771‑M1/1‑91 (MQ=255)

                                         AATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACCTCCTCACCTa                                                   >  2:864320‑M1/1‑91 (MQ=255)

                                         AATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTa                                                   >  1:3144851‑M1/1‑91 (MQ=255)

                                         AATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTa                                                   >  1:3384295‑M1/1‑91 (MQ=255)

                                           ttacgatttcatgcaagatgatatttgacatgaaaacgtaattgggtCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATc                                                 >  1:863745‑M2/48‑91 (MQ=255)

                                           ttacgatttcatgcaagatgatatttgacatgaaaacgtaattgggtAATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATc                                                 >  1:3865957‑M2/48‑91 (MQ=255)

                                            tACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCg                                                <  2:2572758/91‑1 (MQ=255)

                                              cGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACTTCCTCATCTATCGAt                                              <  1:3310166/91‑1 (MQ=255)

                                               gTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGAtt                                             >  2:3146844/1‑91 (MQ=255)

                                               gTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGAtt                                             <  2:2221676/91‑1 (MQ=255)

                                               gTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGAtt                                             <  1:3572550/91‑1 (MQ=255)

                                               gTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGAtt                                             >  2:2549062/1‑91 (MQ=255)

                                               gTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGAtt                                             >  1:1634834/1‑91 (MQ=255)

                                                atttcatgcaagctgatatttgacatgaaaacgtaactgggtCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGAttt                                            >  1:2995211‑M2/43‑91 (MQ=255)

                                                  ttcatgcaagatgatatttgacatgaaaacgtaattgggtCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGATTTgg                                          <  2:3053127‑M2/51‑1 (MQ=255)

                                                  ttCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGATTTgg                                          <  1:3636987/91‑1 (MQ=255)

                                                  ttCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGATTTgg                                          <  2:3548033/91‑1 (MQ=255)

                                                     aTGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGATTTGGCaa                                       <  2:780314/91‑1 (MQ=255)

                                                      tGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGATTTGGCAAt                                      <  1:3202697/91‑1 (MQ=255)

                                                       gTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGATTTGGCAAtt                                     >  1:2644685/1‑91 (MQ=255)

                                                       gTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGATTTGGCAAtt                                     >  2:2797674/1‑91 (MQ=255)

                                                        tCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGATTTGGCAAttt                                    >  2:539063/1‑91 (MQ=255)

                                                        tCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGATTTAGCAAttt                                    >  1:1943203/1‑91 (MQ=255)

                                                          agatgatatttgacatgaaaacgtaattgggtCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGATTTGGCAATTTGt                                  >  1:3716100‑M2/33‑91 (MQ=255)

                                                          aaaTATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGATTTGGCAATTTGt                                  >  1:2847330/1‑91 (MQ=255)

                                                           aaTATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGATTTGGCAATTTGtt                                 <  1:3709755/91‑1 (MQ=255)

                                                            atatCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGATTTGGCAATTTGttt                                <  2:676146/91‑1 (MQ=255)

                                                              atcatcTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGATTTGGCAATTTGTTTaa                              <  2:2727977/91‑1 (MQ=255)

                                                              atcatcTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATGTTGTGTTACATCCTCATCTATCGATTTGGCAATTTGTTTaa                              >  2:3404881/1‑91 (MQ=255)

                                                               tcatcTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGATTTGGCAATTTGTTTAAt                             >  1:551914/1‑91 (MQ=255)

                                                                catcTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGATTTGGCAATTTGTTTAATa                            >  2:405754/1‑91 (MQ=255)

                                                                   cTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGATTTGGCAATTTGTTTAATAGCt                         >  2:1537439/1‑91 (MQ=255)

                                                                    ttGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGATTTGGCAATTTGTTTAATAGCtt                        <  1:461620/91‑1 (MQ=255)

                                                                       cATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGATTTGGCAATTTGTTTAATAGCTTTAt                     >  2:1852565/1‑91 (MQ=255)

                                                                          gAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGATTTGGCAATTTGTTTAATAGCTTTAtgtg                  >  2:320594/1‑91 (MQ=255)

                                                                          gAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGATTTGGCAATTTGTTTAATAGCTTTAtgtg                  >  2:2335714/1‑91 (MQ=255)

                                                                             aTCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGCTTTGGCAATTTGTTTAATAGCTTTATGTGAtt               >  2:1133232/1‑91 (MQ=255)

                                                                             aTCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGATTTGGCAAttt                                    <  1:1089120/70‑1 (MQ=255)

                                                                             aTCGTAACTGGGTCATTTATATGTTATTAGTTATTTCGTGTTACATCCTCATCTATCGATTTGGCAATTTGTTTAATAGCTTTATGTGAtt               <  2:1536079/91‑1 (MQ=255)

                                                                               cGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGATTTGGCAATTTGTTTAATAGCTTTATGTGATTGt             >  1:759673/1‑91 (MQ=255)

                                                                               cGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGATTTGGCAATTTGTTTAATAGCTTTATGTGATTGt             >  1:2011070/1‑91 (MQ=255)

                                                                               cGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGATTTGGCAATTTGTTTAATAGCTTTATGTGATTGt             >  2:161391/1‑91 (MQ=255)

                                                                                gTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGATTTGGCAATTTGTTTAATAGCTTTATGTGATTGTc            >  1:682605/1‑91 (MQ=255)

                                                                                gTAACTGGGTCATTTATATGTTATTAGTTATTTAGTGCTACATCCTCATCTATCGATTTGGCAATTTGTTTAATAGCTTTATGTGATTGTc            >  1:3101615/1‑91 (MQ=255)

                                                                                 tAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGATTTGGCAATTTGTTTAATAGCTTTATGTGATTGTCt           <  2:2102289/91‑1 (MQ=255)

                                                                                 tAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGATTTGGCAATTTGTTTAATAGCTTTATGTGATTGTCt           >  1:3290987/1‑91 (MQ=255)

                                                                                      gggtCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGATTTGGCAATTTGTTTAATAGCTTTATGTGATTGTCTAATTg      <  1:1450248‑M2/87‑1 (MQ=255)

                                                                                       ggtCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGATTTGGCAATTTGTTTAATAGCTTTATGTGATTGTCTAATTgg     <  2:2061456‑M2/88‑1 (MQ=255)

                                                                                          cATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGATTTGGCAATTTGTTTAATAGCTTTATGTGATTGTCTAATTGGATa  >  2:3496607/1‑91 (MQ=255)

TAGTCTATATAACCCTTGCTATATTTTCAAAAACAAAACCCAATTACGTTTTCATGTCAAATATCATCTTGCATGAAATCGTAACTGGGTCATTTATATGTTATTAGTTATTTTGTGTTACATCCTCATCTATCGATTTGGCAATTTGTTTAATAGCTTTATGTGATTGTCTAATTGGATA  >  USA300TCH1516_ALE/2467788‑2467968

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.