BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2681949 =	177 (0.930)	9 (0.050)	7/150	NT	5.9%	coding (873/1278 nt)	mvaA	3‑hydroxy‑3‑methylglutaryl‑coenzyme A reductase
*	?	USA300TCH1516_ALE	2681984 =	121 (0.680)	9 (0.050)	7/150	NT	5.9%	coding (838/1278 nt)	mvaA	3‑hydroxy‑3‑methylglutaryl‑coenzyme A reductase

Only 100 of 222 total aligned reads displayed.

TGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTA  >  USA300TCH1516_ALE/2681859‑2682039

 ggcccaagtagatattcatcgtgcagcaacacataataaaggtgttatgaatggcatacatgctgttgttttagcaacaggaaatgatacg                                                                                            <  1:1346223‑M1/2‑1 (MQ=255)

 ggcccaagtagatattcatcgtgcagcaacacataataaaggtgttatgaatggcatacatgctgttgttttagcaacaggaaatgatacg                                                                                            >  2:3722650‑M1/90‑91 (MQ=255)

 gTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTcg                                                                                            >  1:2420235/1‑91 (MQ=255)

 gTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTcg                                                                                            <  2:965351/91‑1 (MQ=255)

  tCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTcgc                                                                                           >  1:3819253/1‑91 (MQ=255)

  gcccaagtagatattcatcgtgcagcaacacataataaaggtgttatgaatggcatacatgctgttgttttagcaacaggaaatgatacgc                                                                                           <  2:2952403‑M1/3‑1 (MQ=255)

  gcccaagtagatattcatcgtgcagcaacacataataaaggtgttatgaatggcatacatgctgttgttttagcaacaggaaatgatacgc                                                                                           <  2:3437295‑M1/3‑1 (MQ=255)

   cccaagtagatattcatcgtgcagcaacacataataaaggtgttatgaatggcatacatgctgttgttttagcaacaggaaatgatacgcg                                                                                          >  2:2437026‑M1/88‑91 (MQ=255)

   cccaagtagatattcatcgtgcagcaacacataataaaggtgttatgaatggcatacatgctgttgttttagcaacaggaaatgatacgcg                                                                                          >  2:1286580‑M1/88‑91 (MQ=255)

   cATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTcgcg                                                                                          <  1:231183/91‑1 (MQ=255)

    ccaagtagatattcatcgtgcagcaacacataataaaggtgttatgaatggcatacatgctgttgttttagcaacaggaaatgataCGCGt                                                                                         <  2:3181619‑M1/5‑1 (MQ=255)

    aTAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGt                                                                                         >  1:1051809/1‑91 (MQ=255)

     tAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGTAATACCACGATACTGTCCGTCACGACTCGCGTa                                                                                        >  1:3181425/1‑91 (MQ=255)

     tAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTa                                                                                        <  1:2577295/91‑1 (MQ=255)

      aGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTa‑t                                                                                      >  1:1550604/1‑91 (MQ=255)

      aGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTa‑t                                                                                      <  2:177407/91‑1 (MQ=255)

       ggCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTa‑tg                                                                                     <  2:1474857/91‑1 (MQ=255)

         cACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTa‑tgca                                                                                   <  1:2137065/91‑1 (MQ=255)

          aCTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTa‑tgcat                                                                                  <  1:3324262/91‑1 (MQ=255)

           cTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTa‑tgcatg                                                                                 >  1:3675932/1‑91 (MQ=255)

            ttCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTa‑tgcatgc                                                                                >  1:1906165/1‑91 (MQ=255)

            ttCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAG‑AATCCCACCATGCTGACCGGCACGTCTCGCGTA‑TGCTTgcg                                                                               <  2:1005865/91‑1 (MQ=255)

             tattcatcgtgcagcaacacataataaaggtgttatgaatggcatacatgctgttgttttagcaacaggaaatgataCGCGTA‑TGCATgcg                                                                               >  2:1112186‑M1/78‑91 (MQ=255)

             tCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATgcg                                                                               <  2:2384783/91‑1 (MQ=255)

             tCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATgcg                                                                               >  2:2193251/1‑91 (MQ=255)

             tCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATgcg                                                                               >  2:2582593/1‑91 (MQ=255)

              cAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATgcgc                                                                              >  1:3725452/1‑91 (MQ=255)

               aaTTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGTGTA‑TGCATGCGCa                                                                             >  2:1320851/1‑91 (MQ=255)

               aaTTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCa                                                                             >  2:3842278/1‑91 (MQ=255)

               aaTTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCa                                                                             <  2:916023/91‑1 (MQ=255)

                 ttGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACt                                                                           <  2:2063735/91‑1 (MQ=255)

                    tACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGc                                                                        <  1:1714414/91‑1 (MQ=255)

                     aCCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCt                                                                       >  2:606161/1‑91 (MQ=255)

                      ccAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCtt                                                                      <  1:106033/91‑1 (MQ=255)

                        aatcaatcGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCt                                                                    >  2:212522/1‑91 (MQ=255)

                        aatcaatcGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCt                                                                    <  2:1481044/91‑1 (MQ=255)

                         atcaatcGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTg                                                                   <  1:3096221/91‑1 (MQ=255)

                          tcaatcGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGc                                                                  >  1:3551198/1‑91 (MQ=255)

                          tcaatcGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGc                                                                  <  2:2788880/91‑1 (MQ=255)

                          tcaatcGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGc                                                                  >  2:125523/1‑91 (MQ=255)

                           caatcGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGca                                                                 <  1:57583/91‑1 (MQ=255)

                           caacacataataaaggtgttatgaatggcatacatgctgttgttttagcaacaggaaatgataCGCGTA‑TGCATGCGCACTTGCTTCTGca                                                                 >  1:1753317‑M1/64‑91 (MQ=255)

                            aatcGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGcac                                                                <  2:641405/91‑1 (MQ=255)

                            aacacataataaaggtgttatgaatggcatacatgctgttgttttagcaacagggaatgataCGCGTGGTGCATGCGCACTTGCTTCTGca                                                                 >  2:2047032‑M1/63‑91 (MQ=255)

                             atcGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGcacc                                                               >  2:1064194/1‑91 (MQ=255)

                              tcGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGcacca                                                              <  2:763861/91‑1 (MQ=255)

                               cGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGcaccac                                                             >  2:3845405/1‑91 (MQ=255)

                                  taataaaggtgttatgaatggcatacatgctgttgttttagcaacaggaaatgataCGCGTA‑TGCATGCGCACTTGCTTCTGCACCAcgcg                                                          >  2:439023‑M1/57‑91 (MQ=255)

                                  tGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCAcgcg                                                          >  1:1291967/1‑91 (MQ=255)

                                  tGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCAcgcg                                                          <  2:2461603/91‑1 (MQ=255)

                                  tGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCAcgcg                                                          >  1:1922401/1‑91 (MQ=255)

                                  tGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCAcgcg                                                          <  1:3744206/91‑1 (MQ=255)

                                  tGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCAcgcg                                                          >  1:714620/1‑91 (MQ=255)

                                   gACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGt                                                         <  1:38434/91‑1 (MQ=255)

                                   gACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGt                                                         <  1:2649771/91‑1 (MQ=255)

                                    aCGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTa                                                        <  1:1549411/91‑1 (MQ=255)

                                    aCGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTa                                                        <  2:1976399/91‑1 (MQ=255)

                                     cGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTAt                                                       >  1:3460669/1‑91 (MQ=255)

                                     cGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTAt                                                       >  1:2620161/1‑91 (MQ=255)

                                     cGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTAt                                                       <  2:1960122/91‑1 (MQ=255)

                                      gATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATc                                                      <  1:3396527/91‑1 (MQ=255)

                                       aTCGTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCa                                                     <  1:3127889/91‑1 (MQ=255)

                                         cgtGATCGGAGCGCCAGGTGGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCAtt                                                   <  2:1643812/89‑1 (MQ=255)

                                            gATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTcc                                                <  2:3788509/91‑1 (MQ=255)

                                            gATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTcc                                                <  2:1088354/91‑1 (MQ=255)

                                             aTCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCt                                               >  2:3381655/1‑91 (MQ=255)

                                              tCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTg                                              >  2:2629483/1‑91 (MQ=255)

                                               cGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGt                                             <  1:2180846/91‑1 (MQ=255)

                                                 tAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTg                                           <  1:1492586/91‑1 (MQ=255)

                                                     gCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCATTTGCTTCTGCACCACGCGTATCATTTCCTGTTgtttt                                       <  1:3274323/91‑5 (MQ=255)

                                                        aTGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAaac                                    <  2:3630394/91‑1 (MQ=255)

                                                          gTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAaacaa                                  >  1:2716138/1‑91 (MQ=255)

                                                          gTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAaacaa                                  >  2:2336911/1‑91 (MQ=255)

                                                          gTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAaacaa                                  >  1:689203/1‑91 (MQ=255)

                                                            aGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCCGCACCGCGCGTGTCATTTGCTGTTTCGAAgacaacg                                >  2:2293741/1‑90 (MQ=255)

                                                              cAATATCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGc                              <  2:3585438/91‑1 (MQ=255)

                                                                  aCCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGt                          >  1:3577223/1‑91 (MQ=255)

                                                                    cACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTAt                        <  2:3147563/91‑1 (MQ=255)

                                                                    cACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTAt                        <  2:3389219/91‑1 (MQ=255)

                                                                    cACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTAt                        >  2:1436858/1‑91 (MQ=255)

                                                                       gATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCGGTTGCTAAATCAACAGCATGTATGcc                     <  1:760984/91‑1 (MQ=255)

                                                                        aTACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCa                    >  2:706858/1‑91 (MQ=255)

                                                                         tACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCCTTTCCTGTTGCTAAAACAACAGCATGTATGCCAt                   >  2:1550956/1‑91 (MQ=255)

                                                                          aCTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCAtt                  >  1:967556/1‑91 (MQ=255)

                                                                           cTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTg                                           >  1:3153315/1‑65 (MQ=255)

                                                                           cTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTc                 <  1:2810616/91‑1 (MQ=255)

                                                                             gTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAaac                                    >  2:1705924/1‑70 (MQ=255)

                                                                             gTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCAt               >  1:61001/1‑91 (MQ=255)

                                                                             gTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCAt               <  1:58889/91‑1 (MQ=255)

                                                                              tCCGTCACGGCTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATa              <  1:1367279/91‑1 (MQ=255)

                                                                               ccGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACTACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATaa             >  2:1865478/1‑91 (MQ=255)

                                                                                  tCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAacac          >  1:1638891/1‑91 (MQ=255)

                                                                                  tCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAacac          <  2:1249932/91‑1 (MQ=255)

                                                                                  tCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAacac          <  1:1681761/91‑1 (MQ=255)

                                                                                  tCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAacac          >  1:56803/1‑91 (MQ=255)

                                                                                   cACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACAcc         <  1:1174833/91‑1 (MQ=255)

                                                                                      gACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCttt      >  2:1968508/1‑91 (MQ=255)

                                                                                       aCTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCtttt     >  1:2953054/1‑90 (MQ=255)

                                                                                        cTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTttat    <  1:1862771/91‑1 (MQ=255)

                                                                                          CGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTttatta  <  2:2665333‑M1/91‑1 (MQ=255)

TGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTA  >  USA300TCH1516_ALE/2681859‑2682039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.