BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2681949 =	177 (0.930)	9 (0.050)	7/150	NT	5.9%	coding (873/1278 nt)	mvaA	3‑hydroxy‑3‑methylglutaryl‑coenzyme A reductase
*	?	USA300TCH1516_ALE	2681984 =	121 (0.680)	9 (0.050)	7/150	NT	5.9%	coding (838/1278 nt)	mvaA	3‑hydroxy‑3‑methylglutaryl‑coenzyme A reductase

Only 100 of 180 total aligned reads displayed.

GACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACTTGGGCCAA  >  USA300TCH1516_ALE/2681894‑2682074

gACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGt                                                                                            <  1:38434/91‑1 (MQ=255)

 aCGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTa                                                                                           <  2:1976367/91‑1 (MQ=255)

 aCGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTa                                                                                           <  1:1549495/91‑1 (MQ=255)

  cGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTAt                                                                                          <  2:1960122/91‑1 (MQ=255)

  cGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTAt                                                                                          >  1:3460669/1‑91 (MQ=255)

   gATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATc                                                                                         <  1:3396527/91‑1 (MQ=255)

    aTCGTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCa                                                                                        <  1:3127889/91‑1 (MQ=255)

    aTCATGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCa                                                                                        <  1:3128233/91‑1 (MQ=255)

      cgtGATCGGAGCGCCAGGTGGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCAtt                                                                                      <  2:1643812/89‑1 (MQ=255)

       ttGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCAttt                                                                                     <  1:3557118/91‑1 (MQ=255)

        tGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGAGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTc                                                                                    <  1:3357401/91‑1 (MQ=255)

         gATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTcc                                                                                   <  2:3788509/91‑1 (MQ=255)

         gATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTcc                                                                                   <  2:1088354/91‑1 (MQ=255)

         gATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGCATGCATGCGCACTTGCTCCTGCCCCACGCGTCCCATTTcc                                                                                   >  2:3466335/1‑91 (MQ=255)

          aTCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCt                                                                                  >  2:3381655/1‑91 (MQ=255)

          aTCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCt                                                                                  >  2:3381259/1‑91 (MQ=255)

           tCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTg                                                                                 >  2:2629483/1‑91 (MQ=255)

            cGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGt                                                                                <  1:2180846/91‑1 (MQ=255)

              tAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTg                                                                              <  1:1492586/91‑1 (MQ=255)

                aCGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCt                                                                            <  2:2561621/91‑1 (MQ=255)

                aCGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCt                                                                            >  2:965958/1‑91 (MQ=255)

                aCGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCt                                                                            <  2:897983/91‑1 (MQ=255)

                 cGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTa                                                                           >  1:1059429/1‑91 (MQ=255)

                     aTGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAaac                                                                       <  2:3630394/91‑1 (MQ=255)

                      tGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAaaca                                                                      <  1:3285266/91‑1 (MQ=255)

                       gTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAaacaa                                                                     <  2:206765/91‑1 (MQ=255)

                       gTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAaacaa                                                                     >  1:689203/1‑91 (MQ=255)

                        tAGCAATACCACGATACTGGCCATCACGACTCGCGTATGCATGCGCACTGGCTTCTGCACAGCGCGTATCATTTCCTGTTGCTAAaacaac                                                                    <  1:1864468/91‑1 (MQ=255)

                         aGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAaacaacc                                                                   >  2:2293783/1‑90 (MQ=255)

                         aGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAacaaca                                                                   <  2:2459279/91‑1 (MQ=255)

                         aGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCCGCACCGCGCGTGTCATTTGCTGTTTCGAAgacaacg                                                                   >  2:2293741/1‑90 (MQ=255)

                           cAATAGCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGc                                                                 <  2:3585907/91‑1 (MQ=255)

                            aaTACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCa                                                                <  1:3698218/91‑1 (MQ=255)

                               aCCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGt                                                             <  2:382190/91‑1 (MQ=255)

                               aCCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGt                                                             <  1:266584/91‑1 (MQ=255)

                                 cACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTAt                                                           >  2:1436858/1‑91 (MQ=255)

                                 cACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTAt                                                           <  2:3147563/91‑1 (MQ=255)

                                  aCGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATg                                                          >  2:694148/1‑91 (MQ=255)

                                   cGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGc                                                         <  1:569615/91‑1 (MQ=255)

                                    gATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCGGTTGCTAAATCAACAGCATGTATGcc                                                        <  1:760984/91‑1 (MQ=255)

                                     aTACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCa                                                       >  1:3732881/1‑91 (MQ=255)

                                     aTACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCa                                                       >  2:706858/1‑91 (MQ=255)

                                      tACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCAt                                                      <  1:279536/91‑1 (MQ=255)

                                        cTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTg                                                                              <  2:3153315/65‑1 (MQ=255)

                                          gTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAaac                                                                       <  1:1705924/70‑1 (MQ=255)

                                          gTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAaac                                                                       >  2:1705924/1‑70 (MQ=255)

                                          gTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCAt                                                  >  1:61001/1‑91 (MQ=255)

                                          gTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCAt                                                  >  2:1867587/1‑91 (MQ=255)

                                           tCCGTCACGGCTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATa                                                 <  1:1367279/91‑1 (MQ=255)

                                             cGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAac                                               <  1:970123/91‑1 (MQ=255)

                                             cGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAac                                               <  1:2563332/91‑1 (MQ=255)

                                               tCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAacac                                             <  2:1291967/91‑1 (MQ=255)

                                               tCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAacac                                             <  2:2602109/91‑1 (MQ=255)

                                               tCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAacac                                             <  2:1550604/91‑1 (MQ=255)

                                               tCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAacac                                             >  1:1638891/1‑91 (MQ=255)

                                               tCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAacac                                             <  1:1681761/91‑1 (MQ=255)

                                                cACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACAcc                                            <  1:1174833/91‑1 (MQ=255)

                                                 aCGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCt                                           <  1:2621523/91‑1 (MQ=255)

                                                  cGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCtt                                          <  1:2673097/91‑1 (MQ=255)

                                                   gACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCttt                                         >  2:1967763/1‑91 (MQ=255)

                                                    aCTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTtta                                        <  2:2346230/91‑1 (MQ=255)

                                                     cTCGCGTAGGCATGCGCACATGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCACTCATAACACCTttat                                       <  1:1979370/91‑1 (MQ=255)

                                                       CGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTttatta                                     >  1:3272806‑M1/1‑91 (MQ=255)

                                                        GCGTATGCATGCGCACTTGCTTCTGCACCCCGCGTATCATTTCCTGTTGCTAAAACAACCGCATGCATGCCATTCATAACACctttatttt                                    <  2:1675904‑M1/91‑3 (MQ=255)

                                                        GCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTtattat                                    <  1:1297670‑M1/91‑1 (MQ=255)

                                                         CGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTCAAACAACAGCATGTATGCCATTCATAACACCTTTATTAtg                                   >  2:3181425‑M1/1‑91 (MQ=255)

                                                          gtggtgcagaagcaagtgcgcatgcatacgcgTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTAtgt                                  >  1:2376859‑M2/33‑91 (MQ=255)

                                                             tgcatgcGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTAGCTAAAACAACATCATGTATGCCATTCATAACACCTTTCTTATGTGtt                               >  2:448195/1‑91 (MQ=255)

                                                             tgcagaagcaagtgcgcatgcaccacgcgTATCATTCCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGtt                               >  2:2047032‑M2/30‑91 (MQ=255)

                                                              tgcagaagcaagtgcgcatgcatacgcgTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTtg                              >  1:1753317‑M2/29‑91 (MQ=255)

                                                              gcatgcGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTtg                              <  1:907414/91‑1 (MQ=255)

                                                               catgcGCACTTGCTTCTGCACCGCGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTtgc                             <  2:3655228/91‑1 (MQ=255)

                                                               catgcGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTtgc                             <  2:529386/91‑1 (MQ=255)

                                                                  aagcaagtgcgcatgcaccacgcgTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTtgctgc                          >  2:1475205‑M2/25‑91 (MQ=255)

                                                                   cgcACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCa                         <  2:2424350/91‑1 (MQ=255)

                                                                   cgcACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCa                         >  1:2987526/1‑91 (MQ=255)

                                                                   aagcaagtgcgcatgcatacgcgTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCa                         >  2:42627‑M2/24‑91 (MQ=255)

                                                                    gcACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCAc                        >  1:1476419/1‑91 (MQ=255)

                                                                         tGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGa                   <  1:230301/91‑1 (MQ=255)

                                                                          gCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGaa                  <  1:476825/91‑1 (MQ=255)

                                                                          gCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGaa                  <  2:3218250/91‑1 (MQ=255)

                                                                            ttCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAata                <  2:1374542/91‑1 (MQ=255)

                                                                            cgcatgcatacgcgTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAata                >  2:1112186‑M2/15‑91 (MQ=255)

                                                                             tCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAatat               >  1:2952403/1‑91 (MQ=255)

                                                                              cTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATc              <  1:3741205/91‑1 (MQ=255)

                                                                                gCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTa            <  2:2690106/91‑1 (MQ=255)

                                                                                  accacGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACt          <  2:334576/91‑1 (MQ=255)

                                                                                  accacGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACt          <  1:1540423/91‑1 (MQ=255)

                                                                                   ccacGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACtt         <  2:504545/91‑1 (MQ=255)

                                                                                    cacGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACTTg        <  2:3577223/91‑1 (MQ=255)

                                                                                     acgcgTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACTTgg       >  2:3404110‑M2/6‑91 (MQ=255)

                                                                                      cgcgTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACTTggg      >  2:1250699‑M2/5‑91 (MQ=255)

                                                                                      cgcgTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACTTggg      >  2:1286495‑M2/5‑91 (MQ=255)

                                                                                       gcgTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACTTGGGc     <  2:2952403‑M2/88‑1 (MQ=255)

                                                                                       gcgTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACTTGGGc     >  1:3593638‑M2/4‑91 (MQ=255)

                                                                                        cgTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACTTGGGcc    >  2:3722650‑M2/3‑91 (MQ=255)

                                                                                        cgTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACTTGGGcc    <  1:1346223‑M2/89‑1 (MQ=255)

                                                                                         gTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACTTGGGCCa   >  1:712610‑M2/2‑91 (MQ=255)

                                                                                          tATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACTTGGGCCaa  >  2:1826786/1‑91 (MQ=255)

                                                                                          tATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACTTGGGCCaa  >  2:654206/1‑91 (MQ=255)

GACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACTTGGGCCAA  >  USA300TCH1516_ALE/2681894‑2682074

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.