New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2693368 =153 (0.800)20 (0.120) 11/136 NT 14.2% intergenic (+39/+317) mtrR/rocA HTH‑type transcriptional regulator MtrR/1‑pyrroline‑5‑carboxylate dehydrogenase
?USA300TCH1516_ALE 2693417 = 112 (0.690)intergenic (+88/+268) mtrR/rocA HTH‑type transcriptional regulator MtrR/1‑pyrroline‑5‑carboxylate dehydrogenase

Only 100 of 285 total aligned reads displayed.

CGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACA  >  USA300TCH1516_ALE/2693278‑2693458
                                                                                          |                                                                                          
cGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATA                                                                                            <  2:2668853‑M1/91‑1 (MQ=255)
cGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATA                                                                                            <  1:2816087‑M1/91‑1 (MQ=255)
aaagtcatttagatagcggatttatttttttcttcatagtttatgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataa                                                                                            >  2:2979775‑M1/91‑91 (MQ=255)
  agtcatttagatagcggatttatttttttcttcatagtttatgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataaaa                                                                                          >  1:1701053‑M1/89‑91 (MQ=255)
  aaGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAA                                                                                          <  1:1525898‑M1/91‑1 (MQ=255)
   gtcatttagatagcggatttatttttttcttcatagtttatgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataaaaa                                                                                         <  2:3557948‑M1/4‑1 (MQ=255)
   gtcatttagatagcggatttatttttttcttcatagtttatgtgttgtgtatcagttgttttaatagcgataagcaagataaaaataaaaa                                                                                         >  2:3106725‑M1/88‑91 (MQ=255)
   aGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAA                                                                                         >  1:3533420‑M1/1‑91 (MQ=255)
     atatTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAc                                                                                       <  1:2500609/91‑1 (MQ=255)
      atttagatagcggatttatttttttcttcatagtttatgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataAAAAACg                                                                                      <  1:289647‑M1/7‑1 (MQ=255)
       tttagatagcggctttatttttttcttcatagtttatgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataAAAAACGa                                                                                     <  1:2969115‑M1/8‑1 (MQ=255)
       tttagatagcggatttatttttttcttcatagtttatgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataAAAAACGa                                                                                     >  1:3458821‑M1/84‑91 (MQ=255)
       atTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGa                                                                                     <  1:2445340/91‑1 (MQ=255)
        ttGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGAt                                                                                    >  2:2272380/1‑91 (MQ=255)
        ttGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAAATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGAt                                                                                    >  1:3078999/1‑91 (MQ=255)
         tagatagcggatttatttttttcttcatagtttatgtgttgtgtatcagttgttttcatagcgataagcacgataaaaataAAAAACGATa                                                                                   <  1:3782053‑M1/10‑1 (MQ=255)
          gATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAg                                                                                  <  2:3723395/91‑1 (MQ=255)
          agatagcggatttatttttttcttcatagtttatgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataAAAAACGATAg                                                                                  <  1:1593519‑M1/11‑1 (MQ=255)
          agatagcggatttatttttttcttcatagtttatgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataAAAAACGATAg                                                                                  <  1:1334038‑M1/11‑1 (MQ=255)
           aTAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAgt                                                                                 >  2:1341727/1‑91 (MQ=255)
              aCATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTa                                                                              >  1:789985/1‑91 (MQ=255)
                aTTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTaca                                                                            >  2:1719172/1‑91 (MQ=255)
                 ttttCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACGTTCATAATAAAAACGATAGTGTacac                                                                           <  2:2219994/91‑1 (MQ=255)
                  tttCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACg                                                                          >  1:2120913/1‑91 (MQ=255)
                  tttCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACg                                                                          >  1:818804/1‑91 (MQ=255)
                   ttCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGt                                                                         >  2:1836802/1‑91 (MQ=255)
                   ttCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGt                                                                         >  1:3863068/1‑91 (MQ=255)
                    tCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGtt                                                                        >  1:1405462/1‑91 (MQ=255)
                     ccATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTa                                                                       >  2:185511/1‑91 (MQ=255)
                      cATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTaa                                                                      <  2:3331237/91‑1 (MQ=255)
                        tAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATg                                                                    >  2:1312098/1‑91 (MQ=255)
                         aGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGa                                                                   <  2:2593306/91‑1 (MQ=255)
                           aTTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAAt                                                                 >  2:1626258/1‑91 (MQ=255)
                              aaTCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAacgatagtgtacacgaattcattaacg                                                             <  1:651415‑M1/91‑28 (MQ=255)
                               cttcatagtttatgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataAAAAACGATAGTGTACACGTTAATGAATTCgt                                                             >  1:3334126‑M1/60‑91 (MQ=255)
                                ttcatagtttatgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataAAAAACGATAGTGTACACGTTAATGAATTCgtg                                                            >  2:550156‑M1/59‑91 (MQ=255)
                                tCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCgtg                                                            >  2:3705056/1‑91 (MQ=255)
                                tCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCgtg                                                            <  2:63086/91‑1 (MQ=255)
                                  aaTATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAacgatagtagtacacgaattcattaacgtgt                                                         <  2:2096429‑M1/91‑32 (MQ=255)
                                    tagtttatgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataAAAAACGATAGTGTACACGTTAATGAATTCGTGtact                                                        >  1:3164928‑M1/55‑91 (MQ=255)
                                     atTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAacgatagtagtacacgaattcattaacgtgtaca                                                      <  1:3298223‑M1/91‑35 (MQ=255)
                                      ttAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGtactac                                                      >  2:1926161/1‑91 (MQ=255)
                                       tAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTactact                                                     >  2:3083653/1‑91 (MQ=255)
                                       tAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAAT‑AAAAacgatagtagtacacgaattcattaacgtgtacact                                                    <  2:516859‑M1/91‑37 (MQ=255)
                                        aaGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTTATAAT‑AAAAacgatagtagtacacgaattcattaacgtgtacacta                                                   <  2:574549‑M1/91‑38 (MQ=255)
                                         aGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTAt                                                   >  1:2728816/1‑91 (MQ=255)
                                           tgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCg                                                 >  2:150680‑M1/48‑91 (MQ=255)
                                            ttAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGt                                                <  2:1563952/91‑1 (MQ=255)
                                             tAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTt                                               >  1:1078596‑M2/1‑90 (MQ=255)
                                                 tagtagATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTttttt                                           >  2:1241352‑M2/1‑86 (MQ=255)
                                                 gtgtatcagttgttttaatagcgataagcacgataaaaataAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGtttttt                                           >  1:2553706‑M1/42‑91 (MQ=255)
                                                  agtagATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTttttta                                          <  2:3630106‑M2/91‑7 (MQ=255)
                                                   gtagATGAGAAACTCATGAGCGTTATCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTtttttat                                         >  1:3617565‑M2/1‑84 (MQ=255)
                                                   gtagATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTtttttat                                         >  2:3097969‑M2/1‑84 (MQ=255)
                                                    tagATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAacgatagtagtacacgaattcattaacgtgtacactatcgtttttatt                                        <  1:524750‑M1/91‑49 (MQ=255)
                                                    tagATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTtttttatt                                        <  2:588282‑M2/91‑9 (MQ=255)
                                                    tagATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTtttttatt                                        >  1:1177141‑M2/1‑83 (MQ=255)
                                                     agATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTtttttattt                                       <  2:816201/91‑1 (MQ=255)
                                                     agATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTtttttattt                                       >  1:2025076/1‑91 (MQ=255)
                                                       cagttgttttaatagcgataagcacgataaaaataAAAAACGATa                                                                                   >  1:2628496‑M1/36‑45 (MQ=255)
                                                        tGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTtttttattttta                                    >  1:2855065/1‑91 (MQ=255)
                                                         gagaAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTttttatttttat                                   >  2:2381880/1‑91 (MQ=255)
                                                           gaAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCg                                 <  1:96456/91‑1 (MQ=255)
                                                           gaAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCg                                 <  1:1036646/91‑1 (MQ=255)
                                                           gaAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCg                                 >  1:659787/1‑91 (MQ=255)
                                                              aCTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGc                              <  2:2529544/91‑1 (MQ=255)
                                                               cTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCt                             >  2:350601/1‑91 (MQ=255)
                                                                tCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCtt                            <  2:3419995/91‑1 (MQ=255)
                                                                  aTGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTAt                          <  2:1114231/91‑1 (MQ=255)
                                                                  aTGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTAt                          >  1:1282557/1‑91 (MQ=255)
                                                                  aTGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTAt                          >  1:142821/1‑91 (MQ=255)
                                                                  aTGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTAt                          <  2:3745982/91‑1 (MQ=255)
                                                                  aTGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTAt                          >  2:1416288/1‑91 (MQ=255)
                                                                   tGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATc                         <  1:1484975/91‑1 (MQ=255)
                                                                    gAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCg                        <  1:3228180/91‑1 (MQ=255)
                                                                     aGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGc                       <  1:2402696/91‑1 (MQ=255)
                                                                      gCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCt                      >  2:1593519/1‑91 (MQ=255)
                                                                       cGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTa                     <  1:2955317/91‑1 (MQ=255)
                                                                       cGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTa                     <  1:3294190/91‑1 (MQ=255)
                                                                           aCCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTaa                 >  1:566201/1‑91 (MQ=255)
                                                                           aCCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTaa                 <  1:2369396/91‑1 (MQ=255)
                                                                             cAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTaaaa               >  1:3833970/1‑91 (MQ=255)
                                                                             cAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTaaaa               <  1:1749090/91‑1 (MQ=255)
                                                                             cAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTaaaa               >  2:2388114/1‑91 (MQ=255)
                                                                               aCATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAaaca             <  2:801541/91‑1 (MQ=255)
                                                                                   tCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTtttttattatgaatgttggtaacgctcatgagtttctca         <  1:53792‑M2/91‑40 (MQ=255)
                                                                                    cATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTg         >  1:3423884/1‑90 (MQ=255)
                                                                                    cATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGa        >  1:2224949/1‑91 (MQ=255)
                                                                                    cATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGa        >  1:1972107/1‑91 (MQ=255)
                                                                                     ataataAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGAt       >  2:3221221/1‑91 (MQ=255)
                                                                                     ataataAAAACGATAGTGTACACGTTAATGAACTCGTGTACTACTATCGTTTTTTATTTTTATCCTGCTTATCGCTATTAAAACAACTGAt       >  2:603332/1‑91 (MQ=255)
                                                                                       aataaAAAacgatagtagtacacgaattcattaacgtgtacactatcgtttttattatgaatgttggtaacgctcatgagtttctcatcta     >  1:1823633‑M1/1‑8 (MQ=255)
                                                                                       aataaAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATac     <  1:3515676/91‑1 (MQ=255)
                                                                                        ataaAAAacgatagtagtacacgaattcattaacgtgtacactatcgtttttattatgaatgttggtaacgctcatgagtttctcatctac    >  1:2960524‑M1/1‑7 (MQ=255)
                                                                                        ataaAAAacgatagtagtacacgaattcattaacgtgtacactatcgtttttattatgaatgttgataacgctcatgagtttctcatctac    >  1:3617519‑M1/1‑7 (MQ=255)
                                                                                         taaAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTtttttattatgaatgttggtaacgctcatgagtttctcatctact   <  2:3010442‑M2/91‑46 (MQ=255)
                                                                                          aaaaaacgatagtagtacacgaattcattaacgtgtacactatcgtttttattatgaatgttggtaacgctcatgagtttctcatctacta  <  2:2366474‑M1/91‑87 (MQ=255)
                                                                                          aaaaaacgatagtagtacacgaattcattaacgtgtacactatcgtttttattatgaatgttggtaacgctcatgagtttctcatctacta  >  1:2584303‑M1/1‑5 (MQ=255)
                                                                                          aaaaaCGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTtttttattatgaatgttggtaacgctcatgagtttctcatctacta  <  1:2080193‑M2/91‑47 (MQ=255)
                                                                                          AAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTaaa                >  1:3701290‑M1/1‑77 (MQ=255)
                                                                                          |                                                                                          
CGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGTGTACACGTTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACA  >  USA300TCH1516_ALE/2693278‑2693458

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.