New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000731 3772 =382 (0.690)48 (0.100) 17/140 NT 12.3% intergenic (+388/‑96) USA300HOU_pUSA300HOUMR0005/USA300HOU_pUSA300HOUMR0006 hypothetical protein/hypothetical protein
?CP000731 3805 = 353 (0.730)intergenic (+421/‑63) USA300HOU_pUSA300HOUMR0005/USA300HOU_pUSA300HOUMR0006 hypothetical protein/hypothetical protein

Only 100 of 716 total aligned reads displayed.

ATCACCCCTAAATCTTTAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCTATAAATCTACATCACTTTTTC  >  CP000731/3715‑3895
                                                                                          |                                                                                          
  cACCCCTAAATCTTTAAAATGCCCTCTTAAAATTCAAAATAGGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTtttct                                                                                          <  1:41693/91‑1 (MQ=255)
  cACCCCTAAATCTTTAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTtttct                                                                                          >  1:2898157/1‑91 (MQ=255)
  cACCCCTAAATCTTTAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTtttct                                                                                          <  2:3118958/91‑1 (MQ=255)
   aCCCCTAAATCTTTAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTtttctt                                                                                         >  1:219945/1‑91 (MQ=255)
     cccTAAATCTTTAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTtttctttc                                                                                       >  1:527828/1‑91 (MQ=255)
       cTAAATCTTTAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCAt                                                                                     <  1:583154/91‑1 (MQ=255)
        tAAATCTTTAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATa                                                                                    >  2:2810147/1‑91 (MQ=255)
         aaaTCTTTAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATAc                                                                                   <  2:1271233/91‑1 (MQ=255)
         aaaTCTTTAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATAc                                                                                   <  1:2847595/91‑1 (MQ=255)
         aaaTCTTTAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATAc                                                                                   >  1:2635954/1‑91 (MQ=255)
           aTCTTTAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACgg                                                                                 <  1:938549/91‑1 (MQ=255)
           aTCTTTAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACgg                                                                                 <  2:2485857/91‑1 (MQ=255)
             cTTTAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTc                                                                               >  2:2287903/1‑91 (MQ=255)
             cTTTAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTc                                                                               <  1:1296959/91‑1 (MQ=255)
               ttAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAACAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCta                                                                             >  1:3270832/1‑91 (MQ=255)
               ttAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCta                                                                             >  1:747204/1‑91 (MQ=255)
               ttAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCta                                                                             <  2:853630/91‑1 (MQ=255)
                tAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCtat                                                                            >  1:354875/1‑91 (MQ=255)
                 aaaaTGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCtatt                                                                           >  1:2547437/1‑91 (MQ=255)
                  aaaTGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCtattt                                                                          >  1:2716092/1‑91 (MQ=255)
                  aaaTGCCCTCTTAAAATTCAAAATAAGGGAATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCtattt                                                                          <  2:1493242/91‑1 (MQ=255)
                      gcccttattttgaattttaagagggcatAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTatttattt                                                                      >  2:367609‑M2/29‑91 (MQ=255)
                      GCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTatttattt                                                                      <  1:1919903‑M1/91‑1 (MQ=255)
                      GCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTatttattt                                                                      <  2:1812687‑M1/91‑1 (MQ=255)
                       CCCTCTTCAAATTCAAAATAAGGGCATAAAAAATAACAGCTACCCCACATAAAGTGAGGCAGCTTTGTCTTTCATACGGTCTATTTAtttt                                                                     <  2:3615167‑M1/91‑1 (MQ=255)
                        CCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTAttttt                                                                    <  2:529007‑M1/91‑1 (MQ=255)
                        CCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTAttttt                                                                    <  1:1997414‑M1/91‑1 (MQ=255)
                          TCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCta                                                                             >  1:305517‑M1/1‑80 (MQ=255)
                          TCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCt                                                                  >  2:1738587‑M1/1‑91 (MQ=255)
                           ctTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCtatttat                                                                        <  2:3809154/84‑1 (MQ=255)
                           ctTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTtttctt                                                                 <  1:2053731/91‑1 (MQ=255)
                           ctTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTtttctt                                                                 >  2:1437258/1‑91 (MQ=255)
                             tAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTtttctttc                                                               >  2:950978/1‑91 (MQ=255)
                               aaaTTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGa                                                             <  1:2119350/91‑1 (MQ=255)
                                aaTGCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGAc                                                            <  1:3681597/91‑1 (MQ=255)
                                 aTTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACg                                                           >  1:3221544/1‑91 (MQ=255)
                                 aTTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACg                                                           >  1:1168855/1‑91 (MQ=255)
                                 aTTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACg                                                           <  1:1725427/91‑1 (MQ=255)
                                  ttCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGc                                                          >  2:1035326/1‑91 (MQ=255)
                                   tCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGcc                                                         <  1:343863/91‑1 (MQ=255)
                                    cAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCg                                                        <  2:1906490/91‑1 (MQ=255)
                                     aaaaTAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGt                                                       <  2:292373/91‑1 (MQ=255)
                                     aaaaTAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGt                                                       <  2:3366288/91‑1 (MQ=255)
                                      aaaTAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTa                                                      >  2:1657334/1‑91 (MQ=255)
                                        aTAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTAtc                                                    >  1:2964665/1‑91 (MQ=255)
                                         tAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTAtcg                                                   <  1:340736/91‑1 (MQ=255)
                                          aaGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTAtcgt                                                  >  2:422927/1‑91 (MQ=255)
                                          aaGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTAtcgt                                                  >  1:1001965/1‑91 (MQ=255)
                                            gggcatAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTAtcgtcg                                                <  2:269641‑M2/85‑1 (MQ=255)
                                             ggcatAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGa                                               <  1:700288‑M2/86‑1 (MQ=255)
                                               catAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTATCTTTTTCTTTCATACGGTCTATTTATTGTTCTTTCGACGCCGTATCGACGATg                                             >  1:3616198‑M2/4‑91 (MQ=255)
                                               catAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATg                                             >  2:2780738‑M2/4‑91 (MQ=255)
                                                tatgaaagaAAAAGCTACCTCACTTTATCTGGGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGt                                            <  2:1593390‑M1/82‑1 (MQ=255)
                                                atAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGt                                            >  1:1663372‑M2/3‑91 (MQ=255)
                                                   aaaaaTAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAAt                                         <  1:3506126/91‑1 (MQ=255)
                                                   aaaaaTAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAAt                                         >  2:1545827/1‑91 (MQ=255)
                                                    aaaaTAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAAtt                                        <  2:2642067/91‑1 (MQ=255)
                                                    aaaaTAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAAtt                                        <  2:1312945/91‑1 (MQ=255)
                                                    aaaaTAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAAtt                                        <  2:3768410/91‑1 (MQ=255)
                                                     aaaTAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTc                                       <  2:2429077/91‑1 (MQ=255)
                                                     aaaTAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTc                                       <  1:2792176/91‑1 (MQ=255)
                                                       aTAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCaa                                     >  1:671360/1‑91 (MQ=255)
                                                       aTAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCaa                                     <  2:1231414/91‑1 (MQ=255)
                                                       aTAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCaa                                     >  2:2104914/1‑91 (MQ=255)
                                                        tAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCaaa                                    <  1:1515178/91‑1 (MQ=255)
                                                         aaaagctacctcactttatctggggtagcttttTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCaaaa                                   >  1:474591‑M2/34‑91 (MQ=255)
                                                          AAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCaaaaa                                  <  1:818680‑M1/91‑1 (MQ=255)
                                                          AAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCaaaaa                                  <  1:1344892‑M1/91‑1 (MQ=255)
                                                          AAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCaaaaa                                  >  1:2314331‑M1/1‑91 (MQ=255)
                                                           AAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCaaaaaa                                 <  2:1099819‑M1/91‑1 (MQ=255)
                                                            AGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAg                                <  2:2038171‑M1/91‑1 (MQ=255)
                                                             gctacctcactttatctggggtagcttttTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGt                               >  2:1958447‑M2/30‑91 (MQ=255)
                                                             GCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGt                               <  1:1191850‑M1/91‑1 (MQ=255)
                                                              ctacctcactttatctggggtagcttttTCTTTCATACGGTCTATTTATTTTTCTTTCGGCCCCGTATCGTCGATGTAATTCAAAAAAGtt                              >  1:3107088‑M2/29‑91 (MQ=255)
                                                              ctacctcactttatctggggtagcttttTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGtt                              >  1:1076963‑M2/29‑91 (MQ=255)
                                                              CTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGtt                              <  2:609530‑M1/91‑1 (MQ=255)
                                                               tacctcactttatctggggtagcttttTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGCTGTAATTCAAAAAAGTTa                             >  2:2528092‑M2/28‑91 (MQ=255)
                                                               tacctcactttatctggggtagcttttTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTa                             >  2:2385805‑M2/28‑91 (MQ=255)
                                                               TACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTa                             <  2:3331424‑M1/91‑1 (MQ=255)
                                                                ACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTAt                            <  2:220153‑M1/91‑1 (MQ=255)
                                                                   ccAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATggg                         <  2:3493730/91‑1 (MQ=255)
                                                                     aGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCt                       <  2:3229379/91‑1 (MQ=255)
                                                                      gATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAAt                                         >  1:1769508/1‑72 (MQ=255)
                                                                      gATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCta                      <  1:1588659/91‑1 (MQ=255)
                                                                      gATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCta                      >  1:3774812/1‑91 (MQ=255)
                                                                      gATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCta                      <  1:1146131/91‑1 (MQ=255)
                                                                      gATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCta                      <  2:3270832/91‑1 (MQ=255)
                                                                      gATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATGTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCta                      <  2:3876406/91‑1 (MQ=255)
                                                                       aTAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCtat                     <  2:3014759/91‑1 (MQ=255)
                                                                          aaGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGGCGATGGAATTCAAAAAAGTTATGGCCTATaaa                  >  1:1458956/1‑91 (MQ=255)
                                                                           aGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCTATAAAt                 >  2:713909/1‑91 (MQ=255)
                                                                           aGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCTATAAAt                 >  2:910639/1‑91 (MQ=255)
                                                                             tGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCTATAAATCt               >  1:626219/1‑91 (MQ=255)
                                                                              gAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCTATAAATCTa              >  1:2523625/1‑91 (MQ=255)
                                                                              gAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCTATAAATCTa              <  1:892126/91‑1 (MQ=255)
                                                                                ggtagcttttTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCTATAAATCTACa            <  2:2860830‑M2/81‑1 (MQ=255)
                                                                                ggtagcttttTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCTATAAATCTACa            >  1:2426201‑M2/11‑91 (MQ=255)
                                                                                  tagcttttTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCTATAAATCTACATc          <  1:3347765‑M2/83‑1 (MQ=255)
                                                                                        ttTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCTATAAATCTACATCACtttt    >  1:181392‑M2/3‑91 (MQ=255)
                                                                                         tTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCTATAAATCTACATCACttttt   >  1:3839347‑M2/2‑91 (MQ=255)
                                                                                          |                                                                                          
ATCACCCCTAAATCTTTAAAATGCCCTCTTAAAATTCAAAATAAGGGCATAAAAAATAAAAGCTACCCCAGATAAAGTGAGGTAGCTTTTTCTTTCATACGGTCTATTTATTTTTCTTTCGACGCCGTATCGTCGATGTAATTCAAAAAAGTTATGGGCTATAAATCTACATCACTTTTTC  >  CP000731/3715‑3895

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.