BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	7662 =	457 (0.820)	55 (0.110)	14/138	NT	12.0%	intergenic (+272/+254)	USA300HOU_pUSA300HOUMR0010/blaZ	MarR family transcriptional regulator/beta‑lactamase
*	?	CP000731	7700 =	413 (0.860)	55 (0.110)	14/138	NT	12.0%	intergenic (+310/+216)	USA300HOU_pUSA300HOUMR0010/blaZ	MarR family transcriptional regulator/beta‑lactamase

Only 100 of 700 total aligned reads displayed.

GCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTAAAGAGAATTAAGA  >  CP000731/7610‑7790

gCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTc                                                                                            <  1:349886/91‑1 (MQ=255)

 cTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCg                                                                                           <  2:3413886/91‑1 (MQ=255)

  tATTGTCACTTTGCTTGATATATGAGTATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGa                                                                                          >  2:2210094/1‑91 (MQ=255)

   aTTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGAt                                                                                         >  2:839441/1‑91 (MQ=255)

    ttGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGAtt                                                                                        >  2:2267919/1‑91 (MQ=255)

     tGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTCTCGATtg                                                                                       >  1:1938450/1‑91 (MQ=255)

      gTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATtga                                                                                      <  2:2340594/91‑1 (MQ=255)

       tCACTGTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATtgat                                                                                     <  2:3140205/91‑1 (MQ=255)

        cACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATtgatg                                                                                    <  1:623512/91‑1 (MQ=255)

        cACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATtgatg                                                                                    >  1:3205924/1‑91 (MQ=255)

        cACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATtgatg                                                                                    >  2:1178517/1‑91 (MQ=255)

        cACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATtgatg                                                                                    <  1:1290169/91‑1 (MQ=255)

          cTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGaa                                                                                  <  2:1306306/91‑1 (MQ=255)

           tttGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAac                                                                                 >  2:548999/1‑91 (MQ=255)

           tttGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAac                                                                                 >  2:1486795/1‑91 (MQ=255)

             tGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAacac                                                                               >  1:1231767/1‑91 (MQ=255)

              gCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACAcc                                                                              >  1:770512/1‑91 (MQ=255)

              gCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACAcc                                                                              <  1:145859/91‑1 (MQ=255)

               cTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCt                                                                             >  1:2898477/1‑91 (MQ=255)

                  gATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCtata                                                                          >  2:3564076/1‑91 (MQ=255)

                  gATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCtata                                                                          >  2:177113/1‑91 (MQ=255)

                   atatatGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATaa                                                                         <  2:1348264/91‑1 (MQ=255)

                   atatatGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATaa                                                                         >  2:1905473/1‑91 (MQ=255)

                      tatGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAAttg                                                                      <  1:654484/91‑2 (MQ=255)

                        tGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTaaa                                                                    <  2:1605099/91‑1 (MQ=255)

                        tGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTaaa                                                                    <  1:2706097/91‑1 (MQ=255)

                         gagaATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAAc                                                                   <  1:1731081/91‑1 (MQ=255)

                           gaATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTaaa                                                                    >  1:1659089/1‑88 (MQ=255)

                           gaATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTaaa                                                                    <  2:1659089/88‑1 (MQ=255)

                              ttattTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTc                                                              <  2:1710577/91‑1 (MQ=255)

                              ttattTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTc                                                              >  1:3456897/1‑91 (MQ=255)

                               tattTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCa                                                             <  1:100059/91‑1 (MQ=255)

                                attTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCAt                                                            >  1:2626110/1‑91 (MQ=255)

                                attTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCAt                                                            >  1:2415976/1‑91 (MQ=255)

                                attTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCAt                                                            <  1:1375950/91‑1 (MQ=255)

                                attTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTCTTTCGATTGATGAACACATATAATTACACTATTCAt                                                            >  2:3501408/1‑91 (MQ=255)

                                 tttAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATc                                                           <  1:328959/91‑1 (MQ=255)

                                  ttAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCt                                                          <  2:2905276/91‑1 (MQ=255)

                                  ttAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCt                                                          <  2:3082725/91‑1 (MQ=255)

                                    aaCCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCtat                                                        >  2:3772578/1‑91 (MQ=255)

                                     aCCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCtatt                                                       >  2:1112480/1‑91 (MQ=255)

                                     aCCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCtatt                                                       >  1:2389455/1‑91 (MQ=255)

                                       cTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCtattat                                                     >  1:3640902/1‑91 (MQ=255)

                                        ttATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTattatt                                                    <  1:397295/91‑1 (MQ=255)

                                        ttATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTattatt                                                    <  2:200476/91‑1 (MQ=255)

                                        ttATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTACGATTGATGAACACCTATAATTAAACTATTCATCTattatt                                                    <  2:2948833/91‑1 (MQ=255)

                                          ataAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTAttattta                                                  >  1:3747496/1‑91 (MQ=255)

                                          ataAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTAttattta                                                  <  2:2857100/91‑1 (MQ=255)

                                          ataAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTAttattta                                                  <  2:124057/91‑1 (MQ=255)

                                           taAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTAttatttat                                                 <  2:2384590/91‑1 (MQ=255)

                                           taAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTAttatttat                                                 <  2:642665/91‑1 (MQ=255)

                                            aaaTGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATg                                                <  1:1540078/91‑1 (MQ=255)

                                              aTGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGAt                                              >  2:2301358/1‑91 (MQ=255)

                                              aTGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGAt                                              <  2:3852186/91‑1 (MQ=255)

                                              aTGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGAt                                              <  1:819877/91‑1 (MQ=255)

                                              aTGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGAt                                              <  1:2283292/91‑1 (MQ=255)

                                               tGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGAtt                                             <  1:871044/91‑1 (MQ=255)

                                               atgagAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGAtt                                             <  2:2482983‑M1/86‑1 (MQ=255)

                                                  gaAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGAttttt                                          >  1:3860804/1‑91 (MQ=255)

                                                    AAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTg                                        >  1:3361549‑M1/1‑91 (MQ=255)

                                                     AAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGt                                       <  1:2112177‑M1/91‑1 (MQ=255)

                                                      AAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGta                                      <  1:3591985‑M1/91‑1 (MQ=255)

                                                       AAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAAGACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGtat                                     <  1:3076955‑M1/91‑1 (MQ=255)

                                                        AGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGtata                                    <  2:778211‑M1/91‑1 (MQ=255)

                                                        AGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGtata                                    <  1:677021‑M1/91‑1 (MQ=255)

                                                         gcaacgtatcttatttaaagtgcgttgctttttCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGtatat                                   >  2:713590‑M2/34‑91 (MQ=255)

                                                         GCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGtatat                                   >  1:3822911‑M1/1‑91 (MQ=255)

                                                         GCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGtatat                                   <  2:482793‑M1/91‑1 (MQ=255)

                                                         GCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGtatat                                   <  2:1817795‑M1/91‑1 (MQ=255)

                                                          caacgtatcttatttaaagtgcgttgctttttCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGtatata                                  >  1:2175800‑M2/33‑91 (MQ=255)

                                                            ACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACa                                >  2:2119097‑M1/1‑91 (MQ=255)

                                                            ACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACa                                <  1:343039‑M1/91‑1 (MQ=255)

                                                             cgtatcttatttaaagtgcgttgctttttCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACaa                               >  2:3042193‑M2/30‑91 (MQ=255)

                                                              GCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAAt                              <  2:2160688‑M1/91‑1 (MQ=255)

                                                              GCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAAt                              <  1:1128039‑M1/91‑1 (MQ=255)

                                                                 tcttatttaaagtgcgttgctttttCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATAtt                           >  2:1058479‑M2/26‑91 (MQ=255)

                                                                 cTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATAtt                           <  1:910489/91‑1 (MQ=255)

                                                                   ttAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTc                         >  1:2052130/1‑91 (MQ=255)

                                                                      aaTAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATCCAATATTTCTAg                      <  1:2984519/91‑1 (MQ=255)

                                                                        tAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGtt                    >  1:726103/1‑91 (MQ=255)

                                                                        tAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGtt                    <  2:282693/91‑1 (MQ=255)

                                                                          aGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTg                  >  1:2516943/1‑91 (MQ=255)

                                                                           gATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATTCAATATTTCTAGTTTGt                 >  2:2421311/1‑91 (MQ=255)

                                                                           gATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGt                 <  1:3702310/91‑1 (MQ=255)

                                                                           gATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGt                 <  2:3225140/91‑1 (MQ=255)

                                                                             tACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTa               >  2:2743224/1‑91 (MQ=255)

                                                                             tACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTa               >  1:2760375/1‑91 (MQ=255)

                                                                             tACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATCTCTAGTTTGTTa               <  1:1178517/91‑1 (MQ=255)

                                                                               cgttgctttttCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTaaa             >  1:3124703‑M2/12‑91 (MQ=255)

                                                                               cgttgctttttCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTaaa             >  1:527171‑M2/12‑91 (MQ=255)

                                                                               cgttgctttttCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTaaa             >  2:2554055‑M2/12‑91 (MQ=255)

                                                                                  tgctttttCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTAAagag          <  2:3682425‑M2/83‑1 (MQ=255)

                                                                                       tttCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTAAAGAGAATTa     >  1:2483363‑M2/4‑91 (MQ=255)

                                                                                       tttCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTAAAGAGAATTa     >  1:3409265‑M2/4‑91 (MQ=255)

                                                                                       tttCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTAAAGAGAATTa     >  1:1881534‑M2/4‑91 (MQ=255)

                                                                                        ttCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTAAAGAGAATTaa    >  2:3321795‑M2/3‑91 (MQ=255)

                                                                                         tCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTAAAGAGAATTAAg   >  1:3541485‑M2/2‑91 (MQ=255)

                                                                                         tCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTAAAGAGAATTAAg   >  2:1539436‑M2/2‑91 (MQ=255)

                                                                                          cGATTGGTGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTAAAGAGAATTCAGa  >  1:3012466/1‑91 (MQ=255)

                                                                                          cGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTAAAGAGAATTAAGa  >  1:1822386/1‑91 (MQ=255)

GCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTAAAGAGAATTAAGA  >  CP000731/7610‑7790

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.