| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000731 | = 17199 | 350 (0.630) | 20 (0.040) | 10/138 | NT | 6.1% | intergenic (‑138/+109) | USA300HOU_pUSA300HOUMR0021/USA300HOU_pUSA300HOUMR0023 | IS431 mec transposase/bacitracin ABC ATP binding cassette transporter, membrane protein |
| ? | CP000731 | = 17213 | 319 (0.670) | intergenic (‑152/+95) | USA300HOU_pUSA300HOUMR0021/USA300HOU_pUSA300HOUMR0023 | IS431 mec transposase/bacitracin ABC ATP binding cassette transporter, membrane protein | |||||
Only 100 of 538 total aligned reads displayed.
ACTGTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAACCCATTTTTCTCCT > CP000731/17123‑17303 | aCTGTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGAcc > 2:734560/1‑91 (MQ=255) gTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCtgt > 2:1642998‑M2/1‑88 (MQ=255) gTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCtgt < 1:325966‑M2/91‑4 (MQ=255) tATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCtgtt > 2:3535741‑M2/1‑87 (MQ=255) atagagcagattaaagcatttattttaggtgtagttgaagggttgacagaatttgctccagTATCATCAACAATAATCATATGACCTGTtg > 2:228522‑M1/62‑91 (MQ=255) atagagcagattaaagcatttattttaggtgtagttgaagggttgacagaatttgctccagTATCATCAACAATAATCATATGACCTGTtg > 2:2466409‑M1/62‑91 (MQ=255) tACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCtgttgat > 2:3741800‑M2/1‑84 (MQ=255) tACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCtgttgat > 1:3143331‑M2/1‑84 (MQ=255) tACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTAAACCACATATCATCAACAATAATCATATGACCtgttgat > 2:337022‑M2/1‑84 (MQ=255) agagcagagtaaagcattcattttaggtgtagttgaagggttgacagaatttgctccagTATCATCAACAATAATCATATGCCCTGTtgat > 2:821036‑M1/60‑91 (MQ=255) accaccTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCtgttgatg < 1:1118482‑M2/91‑9 (MQ=255) ccaccTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCtgttgatga < 1:1707668‑M2/91‑10 (MQ=255) caccTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCtgttgatgat < 1:1262638‑M2/91‑11 (MQ=255) caccTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCtgttgatgat > 2:643823‑M2/1‑81 (MQ=255) accTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATACCATCAACAATAATCATATGACCtgttgatgata < 1:3182694‑M2/91‑12 (MQ=255) ccTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATAc > 1:1225325/1‑91 (MQ=255) cTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACt > 2:2885413/1‑91 (MQ=255) ttAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTg < 1:939272/91‑1 (MQ=255) tAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTgg > 2:1300062/1‑91 (MQ=255) tAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTgg > 1:3563194/1‑91 (MQ=255) aaGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGc > 2:1447870/1‑91 (MQ=255) aaGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGc < 1:3418419/91‑1 (MQ=255) agtagtTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCa > 2:513925/1‑91 (MQ=255) agtagtTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCa < 2:3126946/91‑1 (MQ=255) agtagtTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCa > 1:544986/1‑91 (MQ=255) agtagtTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCa < 1:1734727/91‑1 (MQ=255) agtTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAAt < 1:2727510/91‑1 (MQ=255) agtTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAAt < 2:1119408/91‑1 (MQ=255) agtTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAAt > 1:3337338/1‑91 (MQ=255) gtTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAAtt < 1:1667209/91‑1 (MQ=255) gtTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAAtt < 2:1764961/91‑1 (MQ=255) ttGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTc > 1:2892762/1‑91 (MQ=255) tGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCt > 1:2210798/1‑91 (MQ=255) gCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTg < 2:2575517/91‑1 (MQ=255) gCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTg < 1:1625616/91‑1 (MQ=255) cAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGt < 1:486743/91‑1 (MQ=255) cAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGt < 2:2045296/91‑1 (MQ=255) gACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCTACAATAATGATATGACCTGTTGATGATACTGGAGCAAATTCTGTCa < 1:3089212/91‑1 (MQ=255) gACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCa > 2:3777142/1‑91 (MQ=255) aCGCACTTCCTAAATCGTCAGCAGTGTTTATCCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCaa < 2:23390/91‑1 (MQ=255) tgtagttgaagggttgacagaatttgctccagTATCATCAACAATAATCATATGACCTGtt < 1:612660‑M1/29‑1 (MQ=255) aCTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCt < 1:1903433/91‑1 (MQ=255) cTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCtt > 1:3593440/1‑91 (MQ=255) ttCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTc > 1:28140/1‑91 (MQ=255) tCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCa > 1:3029447/1‑91 (MQ=255) tCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCa > 2:3053516/1‑91 (MQ=255) tCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCa < 2:778041/91‑1 (MQ=255) cTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAAc > 2:3663413/1‑91 (MQ=255) cTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAAc > 1:148592/1‑91 (MQ=255) cTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAAc < 1:2175551/91‑1 (MQ=255) aaaTCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCATCAACTa > 1:1944399/1‑91 (MQ=255) aaTCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTac < 1:1019049/91‑1 (MQ=255) aaTCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTac < 2:460537/91‑1 (MQ=255) aaTCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTac < 2:340176/91‑1 (MQ=255) tCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTacac > 1:1076589/1‑91 (MQ=255) cGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGt > 2:538474/1‑73 (MQ=255) gTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCt < 2:382788/91‑1 (MQ=255) gTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCt < 1:782497/91‑1 (MQ=255) cagcagTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTaa < 1:1188383/91‑1 (MQ=255) gcagTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTaaaa < 2:348079/91‑1 (MQ=255) cagTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAaaat > 1:73459/1‑91 (MQ=255) tgtTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAaaataaa < 1:982008/91‑1 (MQ=255) tgtTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAaaataaa < 1:890866/91‑1 (MQ=255) gtTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAaaataaat < 1:2689414/91‑1 (MQ=255) gtTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAaaataaat > 1:3866263/1‑91 (MQ=255) ttAACCACATATCATCAACAATAATCATATGACCtgttgatgatatgtggttaaacactgctgacgatttaggaagtgcgtctgcaactac < 2:2712876‑M2/91‑58 (MQ=255) aCCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCttt < 1:2273765/91‑1 (MQ=255) ccACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTa > 2:2975215/1‑91 (MQ=255) atcaACAATAATCATATGACCtgttgatgatatgtggttaaacactgctgacgatttaggaagtgcgtctgcaactacttttaaggtggta < 2:293548‑M2/91‑71 (MQ=255) ATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGctct < 2:3878262‑M1/91‑1 (MQ=255) ATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGctct < 2:1187315‑M1/91‑1 (MQ=255) tcaACAATAATCATATGACCtgttgatgatatgtggttaaacactgctgacgatttaggaagtgcgtctgcaactacttttaaggtgataa < 1:3489664‑M2/91‑72 (MQ=255) TCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCta < 1:3365138‑M1/91‑1 (MQ=255) CAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCtat < 1:3764582‑M1/91‑1 (MQ=255) CAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCtat < 2:214498‑M1/91‑1 (MQ=255) AACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCtata > 2:1956739‑M1/1‑91 (MQ=255) ACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATaa > 1:380901‑M1/1‑91 (MQ=255) ACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATaa > 2:940885‑M1/1‑91 (MQ=255) ACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATaa < 1:1375806‑M1/91‑1 (MQ=255) AATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATaaaa > 1:2094433‑M1/1‑91 (MQ=255) ataatCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAAc > 1:2594027/1‑91 (MQ=255) taatCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAAcc < 2:2765391/91‑1 (MQ=255) taatCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAAcc > 1:1329483/1‑91 (MQ=255) aatCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAAccc < 2:2424436/91‑1 (MQ=255) aatCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAAccc < 2:171726/91‑1 (MQ=255) atCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAACCCa > 1:2321341/1‑91 (MQ=255) tatatGACCTGTTGATGATACTGTAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAACCCAtt < 2:1051641/90‑1 (MQ=255) cATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAACCCAtt < 2:2560481/91‑1 (MQ=255) cATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAACCCAtt > 2:125987/1‑91 (MQ=255) cATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAACCCAtt > 2:1823353/1‑91 (MQ=255) cATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAACCCAtt > 1:1786872/1‑91 (MQ=255) atatGACCTGTTGATGATACTGGAGCCAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAACCCAttt > 2:2207690/1‑91 (MQ=255) tatGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAACCCAtttt > 1:201283/1‑91 (MQ=255) atGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAACCCAttttt < 2:1873447/91‑1 (MQ=255) atGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAACCCAttttt < 2:3593440/91‑1 (MQ=255) atGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAACCCAttttt > 2:1393874/1‑91 (MQ=255) ccTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAACCCATTTTTctcc > 2:209282/1‑91 (MQ=255) cTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAACCCATTTTTctcct > 1:2135300/1‑91 (MQ=255) cTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAACCCATTTTTctcct < 1:2463003/91‑1 (MQ=255) cTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAACCCATTTTTctcct < 2:326633/91‑1 (MQ=255) | ACTGTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAACCCATTTTTCTCCT > CP000731/17123‑17303 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |