BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	88662 =	238 (1.250)	10 (0.070)	6/126	NT	5.7%	intergenic (+35/‑730)	nusG_1/USA300TCH1516_00080	Transcription termination/antitermination protein NusG/hypothetical protein
*	?	USA300TCH1516_ALE	88722 =	143 (0.960)	10 (0.070)	6/126	NT	5.7%	intergenic (+95/‑670)	nusG_1/USA300TCH1516_00080	Transcription termination/antitermination protein NusG/hypothetical protein

Only 100 of 298 total aligned reads displayed.

CTAGTTCTAAATTGAGAAATAAATAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACC  >  USA300TCH1516_ALE/88632‑88812

  aGTTCTAAATTGAGAAATAAATAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAg                                                                                          >  1:498431/1‑91 (MQ=255)

  aGTTCTAAATTGAGAAATAAATAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAg                                                                                          <  2:852215/91‑1 (MQ=255)

   gTTCTAAATTGAGAAATAAATAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAgt                                                                                         <  1:3212279/91‑1 (MQ=255)

   gTTCTAAATTGAGAAATAAATAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAgt                                                                                         >  1:2925943/1‑91 (MQ=255)

    ttCTAAATTGAGAAATAAATAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAgtg                                                                                        <  2:3586318/91‑1 (MQ=255)

     tCTAAATTGAGAAATAAATAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTGCTGTTAAGGATGATATTATTTAgtgt                                                                                       >  2:3367836/1‑91 (MQ=255)

     tCTAAATTGAGAAATAAATAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAgtgt                                                                                       <  2:3647437/91‑1 (MQ=255)

         aaTTGAGAAATAAATAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTaa                                                                                   <  2:3788751/91‑1 (MQ=255)

           ttGAGAAATAAATAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAAt                                                                                 <  1:471730/91‑1 (MQ=255)

             gagaAATAAATAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTa                                                                               >  2:2233189/1‑91 (MQ=255)

             gagaAATAAATAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTa                                                                               >  2:3557058/1‑91 (MQ=255)

             gagaAATAAATAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTa                                                                               >  2:781202/1‑91 (MQ=255)

              agaAATAAATAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTaa                                                                              <  2:972310/91‑1 (MQ=255)

               gaAATAAATAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTaaa                                                                             >  2:629643/1‑91 (MQ=255)

               gaAATAAATAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTaaa                                                                             >  2:1909496/1‑91 (MQ=255)

               gaAATAAATAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTaaa                                                                             <  1:2317980/91‑1 (MQ=255)

               gaAATAAATAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTaaa                                                                             >  2:414040/1‑91 (MQ=255)

               gaAATAAATAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTaaa                                                                             >  2:3339665/1‑91 (MQ=255)

                aaataaatAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTaaaa                                                                            >  1:125482/1‑91 (MQ=255)

                  ataaataGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTaa                                                                              <  1:3075606/87‑1 (MQ=255)

                     aataGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAAt                                                                       >  2:3280259/1‑91 (MQ=255)

                      ataGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAAtt                                                                      >  2:3498087/1‑91 (MQ=255)

                      ataGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAAtt                                                                      >  1:3692549/1‑91 (MQ=255)

                       taGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAAttt                                                                     >  1:2828012/1‑91 (MQ=255)

                        aGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAAtttt                                                                    >  2:2560260/1‑91 (MQ=255)

                         gATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTa                                                                   >  2:2265838/1‑91 (MQ=255)

                         gATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTa                                                                   >  2:2703121/1‑91 (MQ=255)

                         gATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGAATATTTTTTAGTGTGTAAATTAAAAAGAATTTTa                                                                   <  1:432900/91‑1 (MQ=255)

                          atatAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTag                                                                  >  2:1345935/1‑91 (MQ=255)

                          atatAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTag                                                                  <  2:1658953/91‑1 (MQ=255)

                          atatAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTag                                                                  <  1:247122/91‑1 (MQ=255)

                             taAAAATCTCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTagaag                                                               <  2:3436040/91‑1 (MQ=255)

                              AAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTagaaga                                                              <  2:1799814‑M1/91‑1 (MQ=255)

                              AAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTagaaga                                                              >  2:1272867‑M1/1‑91 (MQ=255)

                              AAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTagaaga                                                              >  2:2789556‑M1/1‑91 (MQ=255)

                              AAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTagaaga                                                              >  1:693605‑M1/1‑91 (MQ=255)

                                AAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAAt                                                            >  2:1501308‑M1/1‑91 (MQ=255)

                                AAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAAt                                                            >  1:357596‑M1/1‑91 (MQ=255)

                                AAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAAt                                                            >  1:743859‑M1/1‑91 (MQ=255)

                                  ATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATaa                                                          >  2:54038‑M1/1‑91 (MQ=255)

                                   tatcctccttaacaataataagttatttaaattattgattaaggaggatatttttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAAc                                                         >  2:2646426‑M2/56‑91 (MQ=255)

                                   tatcctccttaacaataataagttatttaaattattgattaaggaggatatttttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAAc                                                         >  2:931099‑M2/56‑91 (MQ=255)

                                    ATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACa                                                        <  1:1416159‑M1/91‑1 (MQ=255)

                                    ATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACa                                                        >  1:3296388‑M1/1‑91 (MQ=255)

                                         CCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTAt                                                   <  1:314995‑M1/91‑1 (MQ=255)

                                         CCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTAt                                                   <  2:679085‑M1/91‑1 (MQ=255)

                                          CTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATc                                                  >  1:176548‑M1/1‑91 (MQ=255)

                                           TTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCa                                                 >  1:1590708‑M1/1‑91 (MQ=255)

                                           TTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCa                                                 >  2:698828‑M1/1‑91 (MQ=255)

                                           TTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCa                                                 <  1:1203543‑M1/91‑1 (MQ=255)

                                            TAATCAATGATTTAAATAACTTAATATTGTTAAGGAGGATATTTTTTACTGTGTAAATTAAAAAGAATTTTAGAAGAATAAAATTTATCaa                                                >  2:731073‑M1/1‑91 (MQ=255)

                                            TAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCaa                                                >  1:453451‑M1/1‑91 (MQ=255)

                                            TAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCaa                                                >  2:3824973‑M1/1‑91 (MQ=255)

                                            TAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCaa                                                >  1:2212589‑M1/1‑91 (MQ=255)

                                             AATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCaaa                                               <  1:105062‑M1/91‑1 (MQ=255)

                                              ATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCaaaa                                              >  2:2405118‑M1/1‑91 (MQ=255)

                                               tCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCaaaaa                                             >  1:1540344/1‑91 (MQ=255)

                                                aataataagttatttaaattattgattaaggaggatatttttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCaaaaaa                                            >  2:2035502‑M2/43‑91 (MQ=255)

                                                 aataatTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAAc                                           >  2:1650393/1‑91 (MQ=255)

                                                 aataatTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAAc                                           >  2:2359002/1‑91 (MQ=255)

                                                   taatTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTg                                         <  2:318173/91‑1 (MQ=255)

                                                   taagTTAAACAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTg                                         <  1:3485742/91‑1 (MQ=255)

                                                    aatTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGt                                        <  1:1105737/91‑1 (MQ=255)

                                                    aatTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGt                                        <  2:3076323/91‑1 (MQ=255)

                                                    aatTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGt                                        <  2:3025877/91‑1 (MQ=255)

                                                      tttAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATAAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTc                                      <  2:1080341/91‑1 (MQ=255)

                                                       ttAAATAACTTATTATTGTTAAGGAGGATATTTTTTTGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCa                                     >  1:3830985/1‑91 (MQ=255)

                                                       ttAAATAACTTATTATTGTTAAGGAGGATATTTTTTTGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCa                                     >  1:240092/1‑91 (MQ=255)

                                                        tAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCAt                                    >  2:1764457/1‑91 (MQ=255)

                                                         aaaTAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCAtt                                   >  2:1671600/1‑91 (MQ=255)

                                                          aaTAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTa                                  >  1:592412/1‑91 (MQ=255)

                                                          aaTAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTa                                  >  2:2608248/1‑91 (MQ=255)

                                                           aTAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTAc                                 <  1:2082187/91‑1 (MQ=255)

                                                           aTAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTAc                                 <  2:1039933/91‑1 (MQ=255)

                                                               cTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCtta                             >  1:3638391/1‑91 (MQ=255)

                                                                ttattaTTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCttat                            <  2:1856728/91‑1 (MQ=255)

                                                                   ttattGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGACGAATAACATTTATCAAAAAACTGTTCATTACCTTATTaa                         >  1:1006662/1‑91 (MQ=255)

                                                                   ttattGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTaa                         >  1:3191923/1‑91 (MQ=255)

                                                                    tattGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAAt                        <  1:1705941/91‑1 (MQ=255)

                                                                       tGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGa                     <  1:3013726/91‑1 (MQ=255)

                                                                        gTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGaa                    <  1:1942320/91‑1 (MQ=255)

                                                                         ttaaggaggatatttttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGaaa                   >  2:1461788‑M2/18‑91 (MQ=255)

                                                                         ttaaggaggatatttttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGaaa                   <  1:1644307‑M2/74‑1 (MQ=255)

                                                                          taaggaggatatttttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAAt                  <  1:2940365‑M2/75‑1 (MQ=255)

                                                                            atgaggatatttttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATta                <  2:3753935‑M2/77‑1 (MQ=255)

                                                                             ggaggatatttttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATtat               >  1:1321288‑M2/14‑91 (MQ=255)

                                                                             ggaggatatttttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATtat               <  2:461352‑M2/78‑1 (MQ=255)

                                                                               aggatatttttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATtatat             >  2:30645‑M2/12‑91 (MQ=255)

                                                                                 gatatttttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATaa           <  2:1885823‑M2/82‑1 (MQ=255)

                                                                                  atatttttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAAt          <  1:781202‑M2/83‑1 (MQ=255)

                                                                                     tttttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTaa       <  2:914211‑M2/86‑1 (MQ=255)

                                                                                     tttttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTaa       <  2:3148325‑M2/86‑1 (MQ=255)

                                                                                       tttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTaaaa     <  2:294697‑M2/88‑1 (MQ=255)

                                                                                       tttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTaaaa     <  1:2743187‑M2/88‑1 (MQ=255)

                                                                                       tttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTaaaa     >  2:3589201‑M2/4‑91 (MQ=255)

                                                                                        ttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTaaaaa    >  1:1837379‑M2/3‑91 (MQ=255)

                                                                                        ttTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTaaaaa    >  1:3796946‑M2/3‑91 (MQ=255)

                                                                                         tTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAAc   >  2:2178561‑M2/2‑91 (MQ=255)

                                                                                          tAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAAcc  >  1:874127/1‑91 (MQ=255)

                                                                                          tAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAAcc  >  2:3158734/1‑91 (MQ=255)

CTAGTTCTAAATTGAGAAATAAATAGATATAAAAATATCCTCCTTAATCAATAATTTAAATAACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACC  >  USA300TCH1516_ALE/88632‑88812

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.