| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 141111 = | 158 (0.830) | 22 (0.130) | 9/146 | NT | 14.5% | coding (36/1779 nt) | iucC_2 | Aerobactin synthase |
| ? | USA300TCH1516_ALE | 141138 = | 116 (0.670) | coding (63/1779 nt) | iucC_2 | Aerobactin synthase | |||||
Only 100 of 200 total aligned reads displayed.
ATTTGTCATAACAAGGAGGTATCGTATTGTGAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACAATAGAAGGACATGATTCAGAGTATCGTTT > USA300TCH1516_ALE/141048‑141227 | aTTTGTCATAACAAGGAGGTATCGTATTGTGAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACtt > 1:3689980/1‑91 (MQ=255)aTTTGTCATAACAAGGAGGTATCGTATTGTGAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACtt > 1:604313/1‑91 (MQ=255) tttGTCATAACAAGGAGGTATCGTATTGTGAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACtta > 1:3660598/1‑91 (MQ=255) tttGTCATAACAAGGAGGTATCGTATTGTGAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACtta < 1:3727159/91‑1 (MQ=255) ttGTCATAACAAGGAGGTATCGTATTGTGAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACttat > 2:962338/1‑91 (MQ=255) tGTCATAACAAGGAGGTATCGTATTGTGAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACttatt > 2:2015727/1‑91 (MQ=255) tGTCATAACAAGGAGGTATCGTATTGTGAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACttatt > 2:1424484/1‑91 (MQ=255) aTAACAAGGAGGTATCGTATTGTGAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATg > 2:2058867/1‑91 (MQ=255) aTAACAAGGAGGTATCGTATTGTGAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATg < 2:3824122/91‑1 (MQ=255) tAACAAGGAGGTATCGTATTGTGAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATga < 2:3360871/91‑1 (MQ=255) tAACAAGGAGGTATCGTATTGTGAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATga > 2:3563072/1‑91 (MQ=255) aaCAAGGAGGTATCGTATTGTGAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATgag < 2:3348280/91‑1 (MQ=255) aaCAAGGAGGTATCGTATTGTGAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATgag > 1:3042248/1‑91 (MQ=255) tgaccgacaccgtcttgatatgacgctttatacacaacaatattctcataaataagtgatgcaccaactggtatcatcactTATTTATgag < 1:413402‑M2/10‑1 (MQ=255) tgaccgacaccgtcttgatatgacgctttatacacaacaatattctcataaataagtgatgcaccaactggtatcatcactTATTTATgag < 1:412727‑M2/10‑1 (MQ=255) cAAGGAGGTATCGTATTGTGAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGaa < 2:2633194/91‑1 (MQ=255) cAAGGAGGTATCGTATTGTGAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGaa < 2:2582589/91‑1 (MQ=255) aaGGAGGTATCGTATTGTGAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAat < 1:1612285/91‑1 (MQ=255) ggaggTATCGTATTGTGAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAatat > 1:667275/1‑91 (MQ=255) ggaggTATCGTATTGTGAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAatat > 2:1043267/1‑91 (MQ=255) ggaggTATCGTATTGTGAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAatat > 2:1887322/1‑91 (MQ=255) ggaggTATCGTATTGTGAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAatat < 2:241830/91‑1 (MQ=255) aggTATCGTATTGTGAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATgaga < 1:3678015/85‑1 (MQ=255) aggTATCGTATTGTGAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATAttg > 1:114133/1‑91 (MQ=255) aggTATCGTATTGTGAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATAttg > 2:547043/1‑91 (MQ=255) ggTATCGTATTGTGAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATAttgt < 2:706043/91‑1 (MQ=255) tATCGTATTGTGAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATAttgttg < 2:2447127/91‑1 (MQ=255) tCGTATTGTGAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTtgtg > 2:298326/1‑91 (MQ=255) gTATTGTGAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGta < 2:1554661/91‑1 (MQ=255) tATTGTGAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGtat < 1:1254602/91‑1 (MQ=255) aTTGTGAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGtata < 2:1336889/91‑1 (MQ=255) ttGTGAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAata > 2:1552272/1‑78 (MQ=255) ttGTGAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAata < 1:1552272/78‑1 (MQ=255) ttGTGAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATaa < 1:298898/91‑1 (MQ=255) gtgACTCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAg < 1:3228863/91‑1 (MQ=255) gtgAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAg < 2:667275/91‑1 (MQ=255) gAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCg > 2:1712009/1‑91 (MQ=255) aTCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTc > 1:269256/1‑91 (MQ=255) cAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCat > 2:2513969/1‑91 (MQ=255) aaaCAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCata > 2:1251571/1‑91 (MQ=255) aCAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATc < 1:3485525/91‑1 (MQ=255) cAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCa > 2:195765/1‑91 (MQ=255) cAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCa > 1:2421360/1‑91 (MQ=255) ttCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGa < 1:128778/91‑1 (MQ=255) tCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGAc > 2:2584270/1‑91 (MQ=255) tCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGAc < 2:2299474/91‑1 (MQ=255) tAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGgt < 1:3233234/91‑1 (MQ=255) aaTCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGgtg < 1:1896810/91‑1 (MQ=255) cGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCg < 1:3794618/91‑1 (MQ=255) cGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCg < 2:3495532/91‑1 (MQ=255) cGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCg < 2:2972446/91‑1 (MQ=255) gtgtAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTAGTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCgg < 2:810338/91‑1 (MQ=255) tAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCa > 1:2955005/1‑91 (MQ=255) ctcataaataAGTGATG‑ATACCAGTTGGTG‑CATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCa < 2:228482‑M1/81‑1 (MQ=255) aaaGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCAt < 2:2726015/91‑1 (MQ=255) aaaGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCAt > 1:849415/1‑91 (MQ=255) cataaataAGTGATGAT‑ACCAGTTGGTG‑CATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCAtt < 1:627894‑M1/83‑1 (MQ=255) aGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCAttt > 1:2016834/1‑91 (MQ=255) aGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCAttt > 1:66116/1‑91 (MQ=255) gACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCAtttt < 1:3595295/91‑1 (MQ=255) cTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTAc > 1:2013428/1‑91 (MQ=255) cTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTAc > 2:2760377/1‑91 (MQ=255) cTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTAc > 1:2532153/1‑91 (MQ=255) tAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACa < 1:3850208/91‑1 (MQ=255) tAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACa < 1:2198505/91‑1 (MQ=255) agagTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACaa < 1:2146450/91‑1 (MQ=255) agagTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACaa < 2:3690072/91‑1 (MQ=255) aataagtgatgataccagttggtgcatcactTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTAGGTCATTTTAc > 1:3521947‑M2/32‑91 (MQ=255) AGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACAATa < 1:985926‑M1/91‑1 (MQ=255) aagtgatgataccagttggtgcatcactTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACAAt > 2:973163‑M2/29‑91 (MQ=255) aagtgatgataccagttggtgcatcactTATTCATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACAAt > 1:3579945‑M2/29‑91 (MQ=255) aagtgatgataccagttggtgcatcactTATTCATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACAAt > 1:3579853‑M2/29‑91 (MQ=255) GTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACAATAg < 2:3073271‑M1/91‑1 (MQ=255) agtgatgataccagttggtgcatcactTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACAATa > 1:1489994‑M2/28‑91 (MQ=255) agtgatgataccagttggtgcatcactTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACAATa > 2:1668318‑M2/28‑91 (MQ=255) agtgatgataccagttggtgcatcactTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACAATa > 2:831481‑M2/28‑91 (MQ=255) agtgatgataccagttggtgcatcactTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACAATa > 1:129485‑M2/28‑91 (MQ=255) TGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACAATAGa < 2:3171695‑M1/91‑1 (MQ=255) GATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACAATAGaa > 2:3645708‑M1/1‑91 (MQ=255) tgatgataccagttggtgcatcactTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACAATAGa > 2:699881‑M2/26‑91 (MQ=255) G‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACAATAGAAGGa < 2:2117376‑M1/91‑1 (MQ=255) c‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACAATAGAAGGAc < 2:1294325/91‑1 (MQ=255) aCCAACTGGTATCATCACTTATTTATGAGAATTTTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACAATAGAAGGACa < 1:3310577/91‑1 (MQ=255) accagttggtgcatcactTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACAATAGAAGGACAt > 1:1948471‑M2/19‑91 (MQ=255) accagttggtgcatcactTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACAATAGAAGGACAt > 1:17417‑M2/19‑91 (MQ=255) ccagttggtgcatcactTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACAATAGAAGGACATg > 2:861930‑M2/18‑91 (MQ=255) tcatcaCTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACAATAGAAGGACATGATTCAGAGt < 1:1816786/91‑1 (MQ=255) gcatcactTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACAATAGAAGGACATGATTCAGAGt < 2:1948471‑M2/83‑1 (MQ=255) catcactTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACAATAGAAGGACATGATTCAGAGTa < 1:1424484‑M2/84‑1 (MQ=255) atcactTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACAATAGAAGGACATGATTCAGAGTAt < 2:3008890‑M2/85‑1 (MQ=255) tcactTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACAATAGAAGGACATGATTCAGAGTATc < 1:800530‑M2/86‑1 (MQ=255) cactTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACAATAGAAGGACATGATTCAGAGTATCg > 2:2948629‑M2/5‑91 (MQ=255) cactTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACAATAGAAGGACATGATTCAGAGTATCg < 2:437927‑M2/87‑1 (MQ=255) cactTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACAATAGAAGGACATGATTCAGAGTATCg > 1:988532‑M2/5‑91 (MQ=255) actTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACAATAGAAGGACATGATTCAGAGTATCGt < 1:2513969‑M2/88‑1 (MQ=255) ctTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACAATAGAAGGACATGATTCAGAGTATCGtt > 1:2294791‑M2/3‑91 (MQ=255) ctTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACAATAGAAGGACATGATTCAGAGTATCGtt < 1:2604653‑M2/89‑1 (MQ=255) ctTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACAATAGAAGGACATGATTCAGAGTATCGtt > 1:2774594‑M2/3‑91 (MQ=255) ctTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACAATAGAAGGACATGATTCAGAGTATCGtt > 1:1030916‑M2/3‑91 (MQ=255) tTATTTATGAGAATATTGTCGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACAATAGAAGGACATGATTCAGAGTATCGttt < 2:3681222‑M2/90‑1 (MQ=255) | ATTTGTCATAACAAGGAGGTATCGTATTGTGAATCAAACAATTCTTAATCGTGTAAAGACTAGAGTGATG‑C‑ACCAACTGGTATCATCACTTATTTATGAGAATATTGTTGTGTATAAAGCGTCATATCAAGACGGTGTCGGTCATTTTACAATAGAAGGACATGATTCAGAGTATCGTTT > USA300TCH1516_ALE/141048‑141227 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |