BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	260284 =	171 (0.900)	10 (0.060)	9/138	NT	6.8%	intergenic (‑398/‑190)	potD_1/pflB	Spermidine/putrescine‑binding periplasmic protein/Formate acetyltransferase
*	?	USA300TCH1516_ALE	260324 =	129 (0.790)	10 (0.060)	9/138	NT	6.8%	intergenic (‑438/‑150)	potD_1/pflB	Spermidine/putrescine‑binding periplasmic protein/Formate acetyltransferase

Only 100 of 207 total aligned reads displayed.

TACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGACT  >  USA300TCH1516_ALE/260234‑260414

taCTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACaaa                                                                                            >  2:1194850/1‑91 (MQ=255)

taCTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTCTTACACaaa                                                                                            >  1:3481415/1‑91 (MQ=255)

    ccTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAg                                                                                        <  2:2090944/91‑1 (MQ=255)

     cTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGt                                                                                       <  2:2108384/91‑1 (MQ=255)

     cTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGt                                                                                       <  2:1370608/91‑1 (MQ=255)

        aaTTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACa                                                                                    >  1:3615864/1‑91 (MQ=255)

        aaTTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACa                                                                                    >  1:1793486/1‑91 (MQ=255)

         aTTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAg                                                                                   >  2:2904087/1‑91 (MQ=255)

         aTTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAg                                                                                   >  2:2297224/1‑91 (MQ=255)

           tAACTGTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGtt                                                                                 <  2:3579185/91‑1 (MQ=255)

            aaCTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTa                                                                                         >  1:2686063/1‑82 (MQ=255)

            aaCTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGttt                                                                                <  1:1659659/91‑1 (MQ=255)

            aaCTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGttt                                                                                >  1:661009/1‑91 (MQ=255)

            aaCTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGttt                                                                                <  1:399672/91‑1 (MQ=255)

            aaCTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGttt                                                                                <  1:2278428/91‑1 (MQ=255)

             aCTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTc                                                                               <  2:2675221/91‑1 (MQ=255)

             aCTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAAGTAGTACAGTTTc                                                                               <  1:2977871/91‑1 (MQ=255)

              cTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCt                                                                              <  2:3765380/91‑1 (MQ=255)

              cTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCt                                                                              <  2:906058/91‑1 (MQ=255)

              cTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCt                                                                              >  1:1054195/1‑91 (MQ=255)

               ttttAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTa                                                                             <  2:1665496/91‑1 (MQ=255)

               ttttAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTa                                                                             >  1:1676965/1‑91 (MQ=255)

               ttttAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTa                                                                             >  1:3208324/1‑91 (MQ=255)

                tttAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTAt                                                                            >  1:3816921/1‑91 (MQ=255)

                 ttAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATg                                                                           <  2:3689570/91‑1 (MQ=255)

                  ttaaGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGt                                                                          <  1:2420419/89‑1 (MQ=255)

                  tAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGt                                                                          >  2:1037083/1‑91 (MQ=255)

                  tAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGt                                                                          <  1:700585/91‑1 (MQ=255)

                  aatgtatgtcaaaacatagaaactgtactaatttgtgtaacagtaatatgctaattgcattctgttacacaaATTAGTACAGTTTCTATGt                                                                          >  1:3786139‑M2/73‑91 (MQ=255)

                   aaaGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGtt                                                                         >  2:1698446/1‑91 (MQ=255)

                     aGCAATGAAAATAGTGAACATTATAACTGTTGTATAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGtttt                                                                       <  2:1599941/91‑1 (MQ=255)

                      gCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACCCAAATTAGTACAGTTTCTATGTTTTg                                                                      >  2:3361139/1‑91 (MQ=255)

                      gCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTg                                                                      >  1:1578398/1‑91 (MQ=255)

                       cAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGa                                                                     >  2:72936/1‑91 (MQ=255)

                         aTGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGaca                                                                   <  1:2623207/91‑1 (MQ=255)

                         aTGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGaca                                                                   <  1:2512981/91‑1 (MQ=255)

                         aTGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGaca                                                                   <  1:2960424/91‑1 (MQ=255)

                          tGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGacat                                                                  <  2:2248756/91‑1 (MQ=255)

                          tGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGacat                                                                  <  1:2887997/91‑1 (MQ=255)

                             aaaTAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGacataca                                                               >  1:891734/1‑91 (MQ=255)

                              aaTAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGacatacat                                                              >  1:200256/1‑91 (MQ=255)

                                tAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACAttt                                                            >  2:1842131/1‑91 (MQ=255)

                                  gTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTtga                                                          >  1:1300950/1‑91 (MQ=255)

                                    gAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTtgatg                                                        <  2:455904/91‑1 (MQ=255)

                                    gAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTtgatg                                                        <  1:717802/91‑1 (MQ=255)

                                     aaCATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTtgatga                                                       >  2:792299/1‑91 (MQ=255)

                                     aaCATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTtgatga                                                       >  1:3403811/1‑91 (MQ=255)

                                      aCATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGaa                                                      >  2:335618/1‑91 (MQ=255)

                                       cATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGaaa                                                     <  2:2353035/91‑1 (MQ=255)

                                        aTTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGaaaa                                                    <  2:3208324/91‑1 (MQ=255)

                                            actaatttgtgtaacagtaatatgctaattgcattctgttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGt                                                >  1:2641614‑M2/47‑91 (MQ=255)

                                              aCTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTAc                                              >  1:1533678/1‑91 (MQ=255)

                                              aCTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTAc                                              <  1:452566/91‑1 (MQ=255)

                                                tgttgtGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACAt                                            <  1:304133/91‑1 (MQ=255)

                                                      GTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACGTAATTTa                                      <  2:3445925‑M1/91‑1 (MQ=255)

                                                      GTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTa                                      <  1:3253044‑M1/91‑1 (MQ=255)

                                                        AACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTAtg                                    <  2:2166325‑M1/91‑1 (MQ=255)

                                                         ACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTAtgt                                   >  1:1364615‑M1/1‑91 (MQ=255)

                                                          CAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTAtgtg                                  >  2:2337557‑M1/1‑91 (MQ=255)

                                                           AGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGa                                 >  1:3069331‑M1/1‑91 (MQ=255)

                                                            gtaatatgctaattgcattctgttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGaa                                >  1:53299‑M2/31‑91 (MQ=255)

                                                            GAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGaa                                >  1:3249046‑M1/1‑91 (MQ=255)

                                                             aaTGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGaaa                               <  1:237491/91‑1 (MQ=255)

                                                              aatatgctaattgcattctgttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGaaaa                              >  1:286276‑M2/29‑91 (MQ=255)

                                                              aTGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGaaaa                              <  2:2598571/91‑1 (MQ=255)

                                                              aTGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGaaaa                              >  1:2331043/1‑91 (MQ=255)

                                                              aTGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGaaaa                              >  2:300464/1‑91 (MQ=255)

                                                                 cAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGaaaaaaa                           >  2:3094704/1‑91 (MQ=255)

                                                                  aaTTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAAt                          >  2:1281216/1‑91 (MQ=255)

                                                                     tAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATcac                       <  2:1425469/91‑1 (MQ=255)

                                                                     tAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATcac                       >  2:3302632/1‑91 (MQ=255)

                                                                     tAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATcac                       <  2:1358674/91‑1 (MQ=255)

                                                                      aattgcattctgttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATcaca                      >  1:3354074‑M2/21‑91 (MQ=255)

                                                                         atatTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCacaaca                   <  1:1263529/91‑1 (MQ=255)

                                                                         atatTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCacaaca                   >  2:2393028/1‑91 (MQ=255)

                                                                          tatTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCAcaacaa                  >  1:3189225/1‑91 (MQ=255)

                                                                           atTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACaacaaa                 >  1:2842507/1‑91 (MQ=255)

                                                                           atTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACaacaaa                 >  1:3744976/1‑91 (MQ=255)

                                                                            ttACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACaacaaac                <  1:2078867/91‑1 (MQ=255)

                                                                             tACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACaacaaaca               <  1:1013063/91‑1 (MQ=255)

                                                                             tACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACaacaaaca               >  1:2836509/1‑91 (MQ=255)

                                                                             tACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACaacaaaca               >  1:756780/1‑91 (MQ=255)

                                                                             tACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACaacaaaca               <  2:2785293/91‑1 (MQ=255)

                                                                             tACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACaacaaaca               <  1:14132/91‑1 (MQ=255)

                                                                               ctgttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAGAAATCACAACAAACATg             >  1:1339694‑M2/12‑91 (MQ=255)

                                                                               ctgttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATg             <  2:1793486‑M2/80‑1 (MQ=255)

                                                                               ctgttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATg             <  1:2119209‑M2/80‑1 (MQ=255)

                                                                                tgttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGc            >  2:3021231‑M2/11‑91 (MQ=255)

                                                                                 gttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCt           <  2:2513616‑M2/82‑1 (MQ=255)

                                                                                 gttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCt           <  2:2514024‑M2/82‑1 (MQ=255)

                                                                                  ttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTa          <  1:2317538‑M2/83‑1 (MQ=255)

                                                                                  ttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTa          >  2:1227279‑M2/9‑91 (MQ=255)

                                                                                   tacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTAc         >  2:2056426‑M2/8‑91 (MQ=255)

                                                                                    acacaaACTAGTACAGTTTCTATGTTTTGAAATACATTTGATGAAAATTGTACATAAATTATAAGAAAAAAATCACAACAAACATGCTACa        <  2:2041629‑M2/85‑1 (MQ=255)

                                                                                       caaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATg     >  1:332677‑M2/4‑91 (MQ=255)

                                                                                       aaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATg     <  2:2214866‑M2/88‑1 (MQ=255)

                                                                                        aaATTAGTACAGTTTCTATGTTTTGACATAAATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAAGGa    >  1:358935‑M2/3‑91 (MQ=255)

                                                                                         aATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATGATTTATGTGAAAAAAATCACAACAAACATGCTACAATGAc   <  2:3189225‑M2/90‑1 (MQ=255)

                                                                                         aATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGAc   >  2:3782178‑M2/2‑91 (MQ=255)

                                                                                         aATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGAc   >  1:314365‑M2/2‑91 (MQ=255)

TACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGACT  >  USA300TCH1516_ALE/260234‑260414

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.