BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	374491 =	136 (0.710)	16 (0.090)	11/144	NT	11.1%	intergenic (+109/+133)	lip2/USA300HOU_RS01705	Lipase 2/hypothetical protein
*	?	USA300TCH1516_ALE	374527 =	135 (0.790)	16 (0.090)	11/144	NT	11.1%	intergenic (+145/+97)	lip2/USA300HOU_RS01705	Lipase 2/hypothetical protein

Only 100 of 220 total aligned reads displayed.

CAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGTTTTTTAAAATAAT  >  USA300TCH1516_ALE/374437‑374617

  gATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTAt                                                                                          <  2:658438/91‑1 (MQ=255)

  gATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTAt                                                                                          >  2:1594602/1‑91 (MQ=255)

   tattcgatcaaccatattattcatacaatttattaagctcataaacagataCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATc                                                                                         >  1:1914589‑M1/52‑91 (MQ=255)

      taAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGt                                                                                      >  2:3269590/1‑91 (MQ=255)

             gaTCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAg                                                                               >  1:309935/2‑91 (MQ=255)

              aTCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGc                                                                              <  1:39275/91‑1 (MQ=255)

                cacaGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCtt                                                                            >  1:911354/1‑91 (MQ=255)

                cacaGTGTTGAAGTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCtt                                                                            >  1:2977663/1‑91 (MQ=255)

                 acaGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTta                                                                           >  1:2816263/1‑91 (MQ=255)

                  caGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTtaa                                                                          >  2:983066/1‑91 (MQ=255)

                  caGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTtaa                                                                          <  1:3741836/91‑1 (MQ=255)

                  caGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTtaa                                                                          >  1:1141667/1‑91 (MQ=255)

                   aGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTtaat                                                                         <  1:1856861/91‑1 (MQ=255)

                   aGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTtaat                                                                         <  2:3454708/91‑1 (MQ=255)

                   aGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTtaat                                                                         <  2:1388335/91‑1 (MQ=255)

                   aGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTtaat                                                                         <  1:215891/91‑1 (MQ=255)

                     tgtTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTtaataa                                                                       >  1:3497418/1‑91 (MQ=255)

                      gtTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATaaa                                                                      >  1:2408633/1‑91 (MQ=255)

                      gtTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATaaa                                                                      >  1:1219237/1‑91 (MQ=255)

                       ttGAATTTATAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAAt                                                                     <  1:3723334/91‑1 (MQ=255)

                       ttGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAAt                                                                     <  1:518253/91‑1 (MQ=255)

                        tGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAAtt                                                                    >  2:2531138/1‑91 (MQ=255)

                              tAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGa                                                              <  2:3630093/91‑1 (MQ=255)

                               aaaaaTAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGaa                                                             <  2:2297740/91‑1 (MQ=255)

                                  aaTAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGaataa                                                          >  2:1731511/1‑91 (MQ=255)

                                  aaTAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCATATCTGTTTATGAGCTTAATAAATTGTATGaataa                                                          >  1:462711/1‑91 (MQ=255)

                                   aTAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGaataat                                                         >  2:409203/1‑91 (MQ=255)

                                    tAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAataata                                                        <  2:1230943/91‑1 (MQ=255)

                                    tAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAataata                                                        >  1:896891/1‑91 (MQ=255)

                                     aGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAatat                                                       >  1:1834226/1‑91 (MQ=255)

                                      gtcaaGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACCAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGCATAATATg                                                      >  2:174702/4‑91 (MQ=255)

                                      gTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATg                                                      <  1:2704941/91‑1 (MQ=255)

                                       tAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATgg                                                     <  2:3593552/91‑1 (MQ=255)

                                       tAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATgg                                                     >  2:2401903/1‑91 (MQ=255)

                                        aaaGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGt                                                    >  2:1275649/1‑91 (MQ=255)

                                        aaaGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGt                                                    >  2:1967965/1‑91 (MQ=255)

                                        aaaGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGt                                                    >  2:67829/1‑91 (MQ=255)

                                        aaaGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGt                                                    >  1:2238009/1‑91 (MQ=255)

                                           gTGAAATAAAGCGCCTGTCTCATTAGAGAAACATAAAGGGACAGGCGTATCTGCTTATGAGCTTAATAAATTGTATGAATAATATGGTTGa                                                 >  2:2522835/1‑91 (MQ=255)

                                            tGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGAt                                                <  2:3349382/91‑1 (MQ=255)

                                             gAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATc                                               <  2:2816263/91‑1 (MQ=255)

                                              aaaTAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGGGCTTAATAAATTGTATGAATAATATGGTTGATCg                                              >  1:2495854/1‑91 (MQ=255)

                                              aaaTAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCg                                              >  2:105276/1‑91 (MQ=255)

                                                aTAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGaat                                                            >  1:1425364/1‑75 (MQ=255)

                                                aTAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGaat                                                            <  2:3046056/75‑1 (MQ=255)

                                                aTAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGaat                                                            <  2:1425364/75‑1 (MQ=255)

                                                aTAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGaa                                            <  2:3491426/91‑1 (MQ=255)

                                                   aaGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATaa                                         >  1:1264173/1‑91 (MQ=255)

                                                   aaGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATaa                                         <  2:1998738/91‑1 (MQ=255)

                                                     gcgcCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACt                                       >  1:134404/1‑91 (MQ=255)

                                                     aCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGGGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACt                                       >  1:2277494‑M1/2‑91 (MQ=255)

                                                      cgcctgtccctttagttttcgctaatgagacaggcgTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTg                                      >  1:3513447‑M2/37‑91 (MQ=255)

                                                      CGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTg                                      <  1:3127952‑M1/91‑1 (MQ=255)

                                                      CGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTg                                      <  2:387123‑M1/91‑1 (MQ=255)

                                                          TGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTa                                  >  1:1720289‑M1/1‑91 (MQ=255)

                                                          TGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTa                                  <  1:1251351‑M1/91‑1 (MQ=255)

                                                              tcATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCat                              <  2:3497418/91‑1 (MQ=255)

                                                               ctttagttttcgctaatgagacaggcgTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCatg                             >  2:117033‑M2/28‑91 (MQ=255)

                                                                 ttAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCatgat                           >  2:1829904/1‑91 (MQ=255)

                                                                 ttAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCatcat                           <  1:1124560/91‑4 (MQ=255)

                                                                 ttAGCGAAAACTAAAGGGACAGGCGTATCTGATTATGAGCTTAATAAATGGTATGAATAATATGGTTGATCGAATAACTGTTTATCatgat                           >  2:885361/1‑91 (MQ=255)

                                                                  tggCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCatgatg                          >  2:1419907/3‑91 (MQ=255)

                                                                  tagttttcgctaatgagacaggcgTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCatgatg                          >  1:625546‑M2/25‑91 (MQ=255)

                                                                  tAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCatgatg                          >  1:2002683/1‑91 (MQ=255)

                                                                  tAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCatgatg                          <  1:3294161/91‑1 (MQ=255)

                                                                  tAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCatcatg                          <  1:642424/91‑1 (MQ=255)

                                                                   aGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCAtgatga                         >  1:2242456/1‑91 (MQ=255)

                                                                     cGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTATTTATCATCATGATa                       <  2:1524027/91‑1 (MQ=255)

                                                                      gAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATaa                      >  2:2259259/1‑91 (MQ=255)

                                                                        aaaCTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAAt                    >  2:628011/1‑91 (MQ=255)

                                                                        aaaCTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAAt                    <  1:1549231/91‑1 (MQ=255)

                                                                        aaaCTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAAt                    <  1:2543065/91‑1 (MQ=255)

                                                                         aaCTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAAtt                   >  2:493432/1‑91 (MQ=255)

                                                                         aaCTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAAtt                   >  1:2144917/1‑91 (MQ=255)

                                                                         aaCTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAAtt                   <  1:1669929/91‑1 (MQ=255)

                                                                         aaCTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAAtt                   >  1:2579813/1‑91 (MQ=255)

                                                                         aaCTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAAtt                   <  1:3433279/91‑1 (MQ=255)

                                                                         aaCTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAAtt                   >  2:150455/1‑91 (MQ=255)

                                                                          aCTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTg                  >  2:296884/1‑91 (MQ=255)

                                                                          aCTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTg                  <  1:3653270/91‑1 (MQ=255)

                                                                            tAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAg                <  1:852520/91‑1 (MQ=255)

                                                                             aaaGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGt               >  2:1857959/1‑91 (MQ=255)

                                                                              aaGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGtt              >  2:2189712/1‑91 (MQ=255)

                                                                              aaGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGtt              >  1:602934/1‑91 (MQ=255)

                                                                               aGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGttt             >  1:2284458/1‑91 (MQ=255)

                                                                                gggACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGtttt            >  1:2058554/1‑91 (MQ=255)

                                                                                   acaggcgTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGTTTTTTa         <  2:1914589‑M2/84‑1 (MQ=255)

                                                                                    caggcgTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGTTTTTTaa        >  2:545116‑M2/7‑91 (MQ=255)

                                                                                     aggcgTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGTTTTTTaaa       >  2:2493293‑M2/6‑91 (MQ=255)

                                                                                     aggcgTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGTTTTTTaaa       >  2:1615914‑M2/6‑91 (MQ=255)

                                                                                      ggcgTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGTTTTTTaaaa      >  1:1175910‑M2/5‑91 (MQ=255)

                                                                                      ggcgTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGTTTTTTaaaa      <  1:1289761‑M2/87‑1 (MQ=255)

                                                                                       gcgTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGTTTTTTAAaat     >  1:3700728‑M2/4‑91 (MQ=255)

                                                                                        cgTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGTTTTTTAAaata    >  2:732561‑M2/3‑91 (MQ=255)

                                                                                         gTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGTTTTTTAAaataa   >  2:1639002‑M2/2‑91 (MQ=255)

                                                                                         gTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGTTTTTTAAaataa   >  2:2100861‑M2/2‑91 (MQ=255)

                                                                                         gTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGTTTTTTAAaataa   <  2:3249508‑M2/90‑1 (MQ=255)

                                                                                          tATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGTTTTTTAAaataat  <  1:1013250/91‑1 (MQ=255)

                                                                                          tATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGTTTTTTAAaataat  >  1:2630746/1‑91 (MQ=255)

                                                                                          tATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGTTTTTTAAaataat  >  2:2451813/1‑91 (MQ=255)

CAGATATAAGTAGCATCACAGTGTTGAATTTAAAAATAGTAAAGTGAAATAAAGCGCCTGTCTCATTAGCGAAAACTAAAGGGACAGGCGTATCTGTTTATGAGCTTAATAAATTGTATGAATAATATGGTTGATCGAATAACTGTTTATCATGATGATAAATTGAGTTTTTTAAAATAAT  >  USA300TCH1516_ALE/374437‑374617

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.