BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 422512	181 (0.950)	21 (0.130)	8/136	NT	11.4%	coding (581/612 nt)	USA300HOU_RS01965	hypothetical protein
*	?	USA300TCH1516_ALE	= 422533	174 (1.080)	21 (0.130)	8/136	NT	11.4%	coding (602/612 nt)	USA300HOU_RS01965	hypothetical protein

Only 100 of 262 total aligned reads displayed.

AGCTACAAAAAGATAGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTAAAGGTGCCTAGCTTTCTTT  >  USA300TCH1516_ALE/422443‑422623

 gCTACAACAAGATAGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAAGGACATTGAa                                                                                           >  1:1948228‑M2/1‑90 (MQ=255)

 gCTACAAAAAGATAGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAa                                                                                           <  1:2159591‑M2/91‑2 (MQ=255)

     cAAAAAGATAGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAacaag                                                                                       >  2:3267919‑M2/1‑86 (MQ=255)

       aaaaGATAGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAacaagtt                                                                                     >  1:1343036‑M2/1‑84 (MQ=255)

       aaaaGATAGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAacaagtt                                                                                     >  2:1627215‑M2/1‑84 (MQ=255)

        aaaGATAGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAacaagttt                                                                                    <  2:1331961‑M2/91‑9 (MQ=255)

           gATAGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAacaagtttgaa                                                                                 <  2:1015262‑M2/91‑12 (MQ=255)

            aTAGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAacaagtttgaaa                                                                                >  2:698370‑M2/1‑79 (MQ=255)

              aGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAac                                                                                          >  2:155390‑M2/1‑77 (MQ=255)

              aGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAAtt                                                                              <  1:258334/91‑1 (MQ=255)

              aGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAAtt                                                                              >  2:2894881/1‑91 (MQ=255)

              aGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAAtt                                                                              >  2:1432272/1‑91 (MQ=255)

               gggAAAATGTAAAAATTAATCCAGCCGCTATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTa                                                                             >  1:1691969/1‑91 (MQ=255)

               gggAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTa                                                                             >  1:319730/1‑91 (MQ=255)

               gggAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTa                                                                             >  1:3745646/1‑91 (MQ=255)

               gggAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTa                                                                             >  2:2861663/1‑91 (MQ=255)

               gggAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTa                                                                             >  2:2597182/1‑91 (MQ=255)

               gggAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTa                                                                             <  1:2376268/91‑1 (MQ=255)

                 gAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAg                                                                           >  2:3659769/1‑91 (MQ=255)

                 gAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAg                                                                           >  1:399610/1‑91 (MQ=255)

                  aaaaTGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGc                                                                          <  1:3456799/91‑1 (MQ=255)

                  aaaaTGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGc                                                                          <  1:853587/91‑1 (MQ=255)

                         aaaaaTTAATACAGCCGATATAAAAAATGTAACTTTCAACCTTGTGAAAAGTGTTAATGACATTGAACAAGTATGAAATTAAGCTAAATTa                                                                   >  2:1853546/1‑91 (MQ=255)

                         aaaaaTTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTa                                                                   >  2:2363995/1‑91 (MQ=255)

                          aaaaTTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAg                                                                  >  2:116917/1‑91 (MQ=255)

                            aaTTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGta                                                                >  1:2438764/1‑91 (MQ=255)

                            aaTTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGta                                                                <  1:3273223/91‑1 (MQ=255)

                             aTTAATACAGCCGATATAAAAAATGTAACTTTCAAACTCGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGtat                                                               >  1:662574/1‑91 (MQ=255)

                                aaTACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGtatata                                                            >  1:1660314/1‑91 (MQ=255)

                                 aTACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGtatatat                                                           >  2:1240416/1‑91 (MQ=255)

                                  tACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGtatatata                                                          <  1:2038916/91‑1 (MQ=255)

                                   aCAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAg                                                         <  2:3800004/91‑1 (MQ=255)

                                   aCAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAg                                                         <  2:3155191/91‑1 (MQ=255)

                                     aGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAGTTAGTATATATAgtg                                                       <  1:3303870/91‑1 (MQ=255)

                                      gCCGATATAAAAAATGTAACTTTCAGACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAgtgt                                                      <  1:3617701/91‑1 (MQ=255)

                                      gCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAgtgt                                                      <  2:1748823/91‑1 (MQ=255)

                                         gATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGtttt                                                   <  2:2446637/91‑1 (MQ=255)

                                            ataAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGCTTGAAATTAAGCTAAATTAGTATATATAGTGTTTtctc                                                >  2:2305878/1‑91 (MQ=255)

                                             taAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCg                                               >  2:413607/1‑91 (MQ=255)

                                             taAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCg                                               <  2:1395700/91‑1 (MQ=255)

                                              aaaaaaTGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGc                                              <  2:855393/91‑1 (MQ=255)

                                              aaaaaaTGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGc                                              <  1:1574533/91‑1 (MQ=255)

                                              aaaaaaTGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGc                                              >  2:3516968/1‑91 (MQ=255)

                                                aaaaTGTAACTTTCAAACTTGTGAAAAGTGTTAATTACATTTAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTa                                            <  2:593104/91‑1 (MQ=255)

                                                aaaaTGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTa                                            >  1:3762801/1‑91 (MQ=255)

                                                 aaaTGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTaa                                           >  1:1497002/1‑91 (MQ=255)

                                                  aaTGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGTTGAATTAGTATATACAGTGTTTTATTGCTAAt                                          <  2:3302686/91‑1 (MQ=255)

                                                   aTGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTGATa                                         >  1:3126705/1‑91 (MQ=255)

                                                     gTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACt                                       <  1:593864/91‑1 (MQ=255)

                                                     gTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACt                                       <  1:2900324/91‑1 (MQ=255)

                                                     gTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACt                                       <  1:741185/91‑1 (MQ=255)

                                                      tAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACtt                                      >  2:974861/1‑91 (MQ=255)

                                                      tAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACtt                                      >  1:928879/1‑91 (MQ=255)

                                                      tAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACtt                                      >  1:2013704/1‑91 (MQ=255)

                                                       aaCTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACttt                                     >  1:3809642/1‑91 (MQ=255)

                                                       aaCTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACttt                                     >  1:1614715/1‑91 (MQ=255)

                                                        aCTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTg                                    <  2:109618/91‑1 (MQ=255)

                                                          tttCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGtata                                                              <  2:925503/63‑1 (MQ=255)

                                                           ttCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGaaa                                 >  1:1482410/1‑91 (MQ=255)

                                                           ttCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGaaa                                 <  2:2089936/91‑1 (MQ=255)

                                                             cAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGt                               >  1:576493/1‑91 (MQ=255)

                                                              aaaCTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGtt                              >  1:228557/1‑91 (MQ=255)

                                                                aCTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAg                            <  1:1006979/91‑1 (MQ=255)

                                                                aCTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAg                            >  2:406305/1‑91 (MQ=255)

                                                                aCTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAg                            >  1:2317479/1‑91 (MQ=255)

                                                                aCTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAg                            <  1:2947321/91‑1 (MQ=255)

                                                                aCTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAg                            >  2:1681348/1‑91 (MQ=255)

                                                                 cTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAgg                           >  2:2085493/1‑91 (MQ=255)

                                                                  ttGTGAAAAGTGTTAATGACATTGAacaagtttgaaagttacattttttatatcggctgtattaatttttacattttccctatctttttgt                          <  1:3567170‑M2/91‑67 (MQ=255)

                                                                  ttGTGAAAAGTGTTAATGACATTGAacaagtttgaaagttacattttttatatcggctgtattaatttttacattttccctatctttttgt                          <  1:2666095‑M2/91‑67 (MQ=255)

                                                                  ttGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGt                          <  1:1927486/91‑1 (MQ=255)

                                                                   tgtgAAAAGTGTTAATGACATTGAacaagtttgaaagttacattttttatatcggctgtattaatttttacattttccctatctttttgtt                         <  2:3082205‑M2/91‑68 (MQ=255)

                                                                   tgtgAAAAGTGTTAATGACATTGAacaagtttgaaagttacattttttatatcggctgtattaatttttacattttccctatctttttgta                         <  2:3615206‑M2/91‑68 (MQ=255)

                                                                   tgtgAAAAGTGTTAATGACATTGAacaagtttgaaagttacattttttatatcggctgtattaatttttacattttccctatctttttgta                         <  1:2069122‑M2/91‑68 (MQ=255)

                                                                   tgtgAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAggct                         <  2:1356083/91‑3 (MQ=255)

                                                                   tgtgAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTa                         >  2:2487824/1‑91 (MQ=255)

                                                                   tgtgAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTa                         <  2:2673059/91‑1 (MQ=255)

                                                                    gtgAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTAt                        <  1:3028849/91‑1 (MQ=255)

                                                                     tgAAAAGTGTTAATGACATTGAacaagtttgaaagttacattttttatatcggctgtattaatttttacattttccctatctttttgtagc                       <  1:1177991‑M2/91‑70 (MQ=255)

                                                                      gAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCt                      <  2:3470699/91‑1 (MQ=255)

                                                                      gAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCt                      <  1:2861663/91‑1 (MQ=255)

                                                                        aaaGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTaa                    >  2:1784162/1‑91 (MQ=255)

                                                                         aaGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTaaa                   <  2:2837675/91‑1 (MQ=255)

                                                                         aaGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTaaa                   <  1:310261/91‑1 (MQ=255)

                                                                           gtgtTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTAAAgg                 >  1:1117559/1‑91 (MQ=255)

                                                                              ttAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTAAAGGTGc              <  1:3837145/91‑1 (MQ=255)

                                                                                aaTGACATTGAacaagtttgaaagttacattttttatatcggctgtattaatttttacattttccctatctttttgtagctctttatgcga            <  1:1209489‑M2/91‑81 (MQ=255)

                                                                                aaTGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTAAAGGTGCCt            >  1:2834115/1‑91 (MQ=255)

                                                                                aaTGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTAAAGGTGCCt            <  1:1780655/91‑1 (MQ=255)

                                                                                 aTGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTAAAGGTGCCTa           <  1:3250593/91‑1 (MQ=255)

                                                                                 aTGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGGTTTATCGCTAATACTTTGAAAGTTAGGTATCTAAAGGTGCCTa           <  2:2987821/91‑1 (MQ=255)

                                                                                    aCATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTAAAGGTGCCTAGct        <  2:3428677/91‑1 (MQ=255)

                                                                                     cATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTAAAGGTGCCTAGctt       <  1:3342469/91‑1 (MQ=255)

                                                                                      aTTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTAAAGGTGCCTAGcttt      <  2:2344864/91‑1 (MQ=255)

                                                                                       ttGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTAAAGGTGCCTAGctttc     >  2:1123765/1‑91 (MQ=255)

                                                                                       ttGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTAAAGGTGCCTAGctttc     <  2:2958558/91‑1 (MQ=255)

                                                                                       ttGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTAAAGGTGCCTAGctttc     <  1:2085493/91‑1 (MQ=255)

                                                                                         gAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTAAAGGTGCCTAGctttctt   >  2:575077/1‑91 (MQ=255)

                                                                                         gAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTAAAGGTGCCTAGctttctt   >  1:3774083/1‑91 (MQ=255)

                                                                                          aaCAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTAAAGGTGCCTAGctttcttt  <  1:1515727/91‑1 (MQ=255)

AGCTACAAAAAGATAGGGAAAATGTAAAAATTAATACAGCCGATATAAAAAATGTAACTTTCAAACTTGTGAAAAGTGTTAATGACATTGAACAAGTTTGAAATTAAGCTAAATTAGTATATATAGTGTTTTATCGCTAATACTTTGAAAGTTAGGTATCTAAAGGTGCCTAGCTTTCTTT  >  USA300TCH1516_ALE/422443‑422623

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.