BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 511978	156 (0.820)	19 (0.110)	13/150	NT	11.4%	intergenic (+46/‑6717)	recR/speA_2	Recombination protein RecR/Arginine decarboxylase
*	?	USA300TCH1516_ALE	= 511998	150 (0.840)	19 (0.110)	13/150	NT	11.4%	intergenic (+66/‑6697)	recR/speA_2	Recombination protein RecR/Arginine decarboxylase

Only 100 of 209 total aligned reads displayed.

AATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTT  >  USA300TCH1516_ALE/511908‑512088

aaTCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTgg                                                                                            <  2:2524640/91‑1 (MQ=255)

   cGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGctt                                                                                         <  1:3124420‑M2/91‑4 (MQ=255)

    gCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGcttt                                                                                        <  1:2610061‑M2/91‑5 (MQ=255)

    gCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGcttt                                                                                        <  1:842537‑M2/91‑5 (MQ=255)

     cAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGctttt                                                                                       >  2:3347029‑M2/1‑86 (MQ=255)

     cAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGctttt                                                                                       <  2:3314480‑M2/91‑6 (MQ=255)

     cAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGctttt                                                                                       <  2:286167‑M2/91‑6 (MQ=255)

     cAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGctttt                                                                                       <  1:779068‑M2/91‑6 (MQ=255)

        gTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCttttttt                                                                                    >  1:3468583/1‑91 (MQ=255)

        gTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCttttttt                                                                                    <  2:1378484/91‑1 (MQ=255)

         tAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTa                                                                                   <  2:1689821/91‑1 (MQ=255)

            aaCAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtgg                                                                                <  2:2363223/91‑1 (MQ=255)

             aCAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggt                                                                               >  2:1175595/1‑91 (MQ=255)

             aCAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggt                                                                               <  1:2311180/91‑1 (MQ=255)

               aGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggtgt                                                                             <  1:2984991/91‑1 (MQ=255)

               aGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggtgt                                                                             <  2:1015127/91‑1 (MQ=255)

               aGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggtgt                                                                             >  2:3524541/1‑91 (MQ=255)

               aGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggtgt                                                                             <  2:809679/91‑1 (MQ=255)

                gAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggtgtg                                                                            <  1:7080/91‑1 (MQ=255)

                gAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggtgtg                                                                            <  2:1641718/91‑1 (MQ=255)

                 aaaTGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggtgtgg                                                                           <  1:1064001/91‑1 (MQ=255)

                 aaaTGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggtgtgg                                                                           >  1:202607/1‑91 (MQ=255)

                  aatgtaatgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggtgtggt                                                                          <  1:2185937/91‑1 (MQ=255)

                    tgtaatgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATggtgtggtgt                                                                        <  2:3111668/91‑1 (MQ=255)

                     gtaatgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAATGTAATCATTGTGGCTTTTTTTATGgtgtggtgtg                                                                       <  2:3386692/91‑1 (MQ=255)

                      taatgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGa                                                                      >  1:2841867/1‑91 (MQ=255)

                      taatgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTATGa                                                                      <  2:3673368/91‑1 (MQ=255)

                       aatgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGAt                                                                     <  2:1454766/91‑1 (MQ=255)

                        atgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAACAAAAGTCACAGTGTAATCATTGTGGcgtttcttactatagtattaaaat                                                                    <  2:2948402‑M2/91‑25 (MQ=255)

                         tgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGt                                                                   <  2:2610061/91‑1 (MQ=255)

                          gtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggtgtggt                                                                          >  2:2069114/1‑83 (MQ=255)

                          gtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggtgtggt                                                                          <  1:2069114/83‑1 (MQ=255)

                          gtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGta                                                                  <  2:3839215/91‑1 (MQ=255)

                          gtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGta                                                                  <  1:3634181/91‑1 (MQ=255)

                          gtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGta                                                                  >  1:368434/1‑91 (MQ=255)

                            cttctATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGtact                                                                >  1:3215211/1‑91 (MQ=255)

                             ttctATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGtacta                                                               <  1:144149/91‑1 (MQ=255)

                              tctATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGtactac                                                              <  2:1368191/91‑1 (MQ=255)

                               ctATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTactact                                                             <  2:2706467/91‑1 (MQ=255)

                               ctATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTactact                                                             <  1:1619674/91‑1 (MQ=255)

                               ctATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTactact                                                             <  2:1281587/91‑1 (MQ=255)

                                  ttAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTa                                                          >  2:1478369/1‑91 (MQ=255)

                                   tAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTAt                                                         <  2:2299415/91‑1 (MQ=255)

                                   tAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTAt                                                         <  2:3062592/91‑1 (MQ=255)

                                       cATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGc                                                     <  2:2547742/91‑1 (MQ=255)

                                        aTTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCg                                                    <  2:733133/91‑1 (MQ=255)

                                        aTTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATCGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCg                                                    >  1:3088056/1‑91 (MQ=255)

                                         tttttGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCgg                                                   <  1:455949/91‑1 (MQ=255)

                                         tttttGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCgg                                                   >  2:835338/1‑91 (MQ=255)

                                          ttttGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGgt                                                  <  1:3164115/91‑1 (MQ=255)

                                           tttGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGgtg                                                 >  2:2982778/1‑91 (MQ=255)

                                             tGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGtgtg                                               <  1:3763051/91‑1 (MQ=255)

                                              gATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTgg                                              >  1:1379583/1‑91 (MQ=255)

                                               aTTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGc                                             <  2:1834822/91‑1 (MQ=255)

                                               aTTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGc                                             <  2:2889613/91‑1 (MQ=255)

                                                 tttAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCgg                                           >  1:3020110/1‑91 (MQ=255)

                                                    aaTACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCggtgg                                        >  1:2660677/1‑91 (MQ=255)

                                                    aaTACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCggtgg                                        <  1:2682695/91‑1 (MQ=255)

                                                     aTACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCggtggt                                       <  1:3285612/91‑1 (MQ=255)

                                                      tACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTa                                      <  2:3124420/91‑1 (MQ=255)

                                                      tACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTa                                      <  1:3419680/91‑1 (MQ=255)

                                                      tACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTa                                      <  1:511380/91‑1 (MQ=255)

                                                       aCTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGcttttcttactatagtattaaaatcaaaaatgtttaatagaagacattacatttc                                     <  1:165036‑M2/91‑56 (MQ=255)

                                                        cTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGcttttcttactatagtattaaaatcaaaaatgtttaatagaagactttacatttct                                    <  2:357137‑M2/91‑57 (MQ=255)

                                                        cTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATg                                    <  2:3280913/91‑1 (MQ=255)

                                                          ataGTAAGAAAAGTCACAGTGTAATCATTGTGGcttttcttactatagtattaaaatcaaaaatgtttaatagaagacattacatttctgt                                  <  1:3855014‑M2/91‑59 (MQ=255)

                                                          ataGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGt                                  <  2:262609/91‑1 (MQ=255)

                                                           taGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGtt                                 <  1:2224282/91‑1 (MQ=255)

                                                             gTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTa                               >  1:3758742/1‑91 (MQ=255)

                                                              tAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTAc                              >  1:1184440/1‑91 (MQ=255)

                                                              tAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTAc                              <  1:3074965/91‑1 (MQ=255)

                                                              tAAGAAAAGTCACAGTGTAATCATTGAGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTAc                              <  2:3356813/91‑1 (MQ=255)

                                                                  aaaaGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAg                          >  2:375169/1‑91 (MQ=255)

                                                                  aaaaGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAg                          <  1:2712237/91‑1 (MQ=255)

                                                                      gTCACAGTGTAATCATTGTGGcttttcttactatagtattaaaatcaaaaatgtttaatagaagacattacatttctgttctacctgcgat                      <  2:3633268‑M2/91‑71 (MQ=255)

                                                                      gTCACAGTGTAATCATTGTGGcttttcctactatagtattaaaatcaaaaatgtttaatagaagacattacatttctgttctacctgcgat                      <  2:40043‑M2/91‑71 (MQ=255)

                                                                      gTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGtttt                      >  1:1829707/1‑91 (MQ=255)

                                                                      gTCACAGTGTAATCAATGTGGcttttcttactatagtattaaaatcaaaaatgtttaatagaagacattacatttctgttctacctgcgat                      <  1:1554923‑M2/91‑71 (MQ=255)

                                                                       tCACAGTGTAATCATTGTGGcttttcttactatagtattaaaatcaaaaatgtttaatagaagacattacatttctgttctacctgcgatt                     <  2:2175385‑M2/91‑72 (MQ=255)

                                                                        cacaGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTAc                    <  2:1606170/91‑1 (MQ=255)

                                                                         acaGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACt                   <  2:476589/91‑1 (MQ=255)

                                                                         acaGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACt                   <  2:627344/91‑1 (MQ=255)

                                                                          caGTGTAATCATTGTGGcttttcttactatagtattaaaatcaaaaatgtttaatagaagacattacatttctgttctacctgcgattgct                  <  1:1012451‑M2/91‑75 (MQ=255)

                                                                          caGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTg                  >  2:870239/1‑91 (MQ=255)

                                                                          caGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTg                  >  2:2722654/1‑91 (MQ=255)

                                                                          caGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTg                  >  2:2036489/1‑91 (MQ=255)

                                                                          caGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTg                  <  2:198521/91‑1 (MQ=255)

                                                                          caGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTg                  <  1:3440034/91‑1 (MQ=255)

                                                                           aGTGTAATCATTGTGGcttttcttactatagtattaaaatcaaaaatgtttaatagaagacattacatttctgttctacctgcgattgctt                 <  2:2147027‑M2/91‑76 (MQ=255)

                                                                             tgtAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAgg               >  1:1387248/1‑91 (MQ=255)

                                                                                  tCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATgg          <  1:3585343/91‑1 (MQ=255)

                                                                                    aTTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGt        <  1:1474486/91‑1 (MQ=255)

                                                                                    aTTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGt        <  2:2187921/91‑1 (MQ=255)

                                                                                     ttGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTa       <  2:1548823/91‑1 (MQ=255)

                                                                                      tgtgGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTaa      >  1:3806890/1‑91 (MQ=255)

                                                                                       gtgGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAAt     <  2:1862683/91‑1 (MQ=255)

                                                                                        tgGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATc    >  1:2497906/1‑91 (MQ=255)

                                                                                        tgGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATc    >  1:2498115/1‑91 (MQ=255)

                                                                                         ggCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCt   >  2:1493646/1‑91 (MQ=255)

                                                                                          gCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCtt  >  2:421662/1‑91 (MQ=255)

AATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTT  >  USA300TCH1516_ALE/511908‑512088

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.