BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	553211 =	179 (0.940)	10 (0.060)	5/138	NT	6.7%	coding (182/477 nt)	folK	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase
*	?	USA300TCH1516_ALE	553257 =	124 (0.760)	10 (0.060)	5/138	NT	6.7%	coding (228/477 nt)	folK	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase

Only 100 of 207 total aligned reads displayed.

GGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATA  >  USA300TCH1516_ALE/553168‑553347

gggTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGa                                                                                           <  1:175377/91‑1 (MQ=255)

 ggTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGAc                                                                                          >  2:2814481/1‑91 (MQ=255)

  gTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTCGAAGACa                                                                                         >  1:1940279/1‑91 (MQ=255)

   tataCTGAGCAACCTAACTTTTTACATTTGTGCGTTGAACTTCAAACAACACTCACAGTATTACAACAGTTGGAATGTTGTTTGAAGACag                                                                                        >  2:5027/1‑91 (MQ=255)

   tataCTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACag                                                                                        >  2:3756010/1‑91 (MQ=255)

    ataCTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACaga                                                                                       >  1:3124409/1‑91 (MQ=255)

      aCTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACagaag                                                                                     <  1:521167/91‑1 (MQ=255)

          aGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATg                                                                                 >  2:79807/1‑91 (MQ=255)

          aGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATg                                                                                 <  1:3662453/91‑1 (MQ=255)

          aGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATg                                                                                 <  2:541391/91‑1 (MQ=255)

           gCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGt                                                                                >  2:3035327/1‑91 (MQ=255)

             aaCCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGttt                                                                              <  1:1041446/91‑1 (MQ=255)

              aCCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTa                                                                             >  2:3239317/1‑91 (MQ=255)

              aCCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTa                                                                             <  1:263011/91‑1 (MQ=255)

               ccTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTac                                                                            <  2:751820/91‑1 (MQ=255)

               ccTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTac                                                                            >  1:266772/1‑91 (MQ=255)

               ccTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTac                                                                            <  2:2582131/91‑1 (MQ=255)

                  aaCTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACAcc                                                                         <  1:722673/91‑1 (MQ=255)

                   aCTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCg                                                                        >  2:1406217/1‑91 (MQ=255)

                    cTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGt                                                                       <  2:2282468/91‑1 (MQ=255)

                     tttttAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTa                                                                      <  1:1754910/91‑1 (MQ=255)

                      ttttAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTAt                                                                     <  1:2064820/91‑1 (MQ=255)

                        ttAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTa                                                                   >  1:1714584/1‑91 (MQ=255)

                        ttAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTa                                                                   <  1:3675011/91‑1 (MQ=255)

                        ttAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTa                                                                   >  2:311011/1‑91 (MQ=255)

                          aaaTTTGTGTGTTGAAATTCAAACAACACTCACTGTAGTACAACTGCTGGAATGTTGTTCGAAGACAGAAGAATGTTTACACCGTATTAGa                                                                 >  1:3098657/1‑91 (MQ=255)

                           aaTTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGaa                                                                >  2:3343118/1‑91 (MQ=255)

                           aaTTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGaa                                                                <  2:2031223/91‑1 (MQ=255)

                            aTTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGaaa                                                               <  1:2745837/91‑1 (MQ=255)

                              ttGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAgg                                                             <  2:1084848/91‑1 (MQ=255)

                              ttGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAgg                                                             <  1:2859728/91‑1 (MQ=255)

                                  gtgtTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACg                                                         <  2:2685207/91‑1 (MQ=255)

                                  gtgtTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACg                                                         >  2:3814633/1‑91 (MQ=255)

                                   tgtTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGa                                                        >  2:1191759/1‑91 (MQ=255)

                                    gtTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGAt                                                       >  1:3851966/1‑91 (MQ=255)

                                     ttGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATg                                                      <  2:935529/91‑1 (MQ=255)

                                      tGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATgg                                                     >  2:3265816/1‑91 (MQ=255)

                                          aTTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTc                                                 <  1:1910595/91‑1 (MQ=255)

                                          aTTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTc                                                 <  2:724062/91‑1 (MQ=255)

                                          aTTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTc                                                 <  1:1910539/91‑1 (MQ=255)

                                           TTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTcc                                                >  1:2481315‑M1/1‑91 (MQ=255)

                                              AAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAg                                             >  1:3822818‑M1/1‑91 (MQ=255)

                                              AAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAg                                             <  1:2234113‑M1/91‑1 (MQ=255)

                                              AAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAg                                             <  2:618131‑M1/91‑1 (MQ=255)

                                               AACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGa                                            >  2:1931326‑M1/1‑91 (MQ=255)

                                               AACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGa                                            <  2:1690823‑M1/91‑1 (MQ=255)

                                                acaacattccaacagttgtaatactgtgagtgttgtttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGaa                                           >  1:1507697‑M2/42‑91 (MQ=255)

                                                ACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGaa                                           <  2:3450182‑M1/91‑1 (MQ=255)

                                                 CAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAAc                                          >  2:252853‑M1/1‑91 (MQ=255)

                                                 CAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAAc                                          >  1:573925‑M1/1‑91 (MQ=255)

                                                 CAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAAc                                          >  2:353736‑M1/1‑91 (MQ=255)

                                                  aacattccaacagttgtaatactgtgagtgttgtttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACt                                         >  2:2149441‑M2/40‑91 (MQ=255)

                                                   ACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACtt                                        <  1:904118‑M1/91‑1 (MQ=255)

                                                   ACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACtt                                        <  1:93624‑M1/91‑1 (MQ=255)

                                                   ACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACtt                                        <  1:1205966‑M1/91‑1 (MQ=255)

                                                   ACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACtt                                        >  1:831686‑M1/1‑91 (MQ=255)

                                                   ACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACtt                                        <  1:1850946‑M1/91‑1 (MQ=255)

                                                     attccaacagttgtaatactgtgagtgttgtttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTa                                      >  1:1123094‑M2/37‑91 (MQ=255)

                                                     attccaacagttgtaatactgtgagtgttgtttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTa                                      >  1:2789413‑M2/37‑91 (MQ=255)

                                                       tCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGa                                    >  2:1147309/1‑91 (MQ=255)

                                                       tCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGa                                    <  1:3448964/91‑1 (MQ=255)

                                                       tCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGa                                    >  2:1490749/1‑91 (MQ=255)

                                                       tCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGa                                    >  1:827332/1‑91 (MQ=255)

                                                        cacaGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACTGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAgct                                   >  2:1584315/1‑89 (MQ=255)

                                                         acaGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGAtg                                  >  2:350891/1‑91 (MQ=255)

                                                         acaGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGAtg                                  >  1:221845/1‑91 (MQ=255)

                                                         acaGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGAtg                                  <  2:303412/91‑1 (MQ=255)

                                                          caGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGAtgt                                 <  1:2336503/91‑1 (MQ=255)

                                                           acagttgtaatactgtgagtgttgtttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGt                                                  <  1:805367‑M2/43‑1 (MQ=255)

                                                           acagttgtaatactgtgagtgttgtttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGt                                                  >  2:805367‑M2/31‑73 (MQ=255)

                                                            gTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTgg                               >  1:1365424/1‑91 (MQ=255)

                                                            gTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTgg                               <  2:2325292/91‑1 (MQ=255)

                                                             tATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGa                              >  2:36572/1‑91 (MQ=255)

                                                             tATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGa                              <  2:709338/91‑1 (MQ=255)

                                                                 aataCTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGGCCTAGAACTTTAGATGTGGATAtt                          >  1:1729429/4‑91 (MQ=255)

                                                                 aCAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATAtt                          <  2:2866337/91‑1 (MQ=255)

                                                                 aCAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATAtt                          >  1:1561172/1‑91 (MQ=255)

                                                                  cAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATAttt                         <  1:3443295/91‑1 (MQ=255)

                                                                    aCTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTATAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTttg                       <  2:2992907/91‑1 (MQ=255)

                                                                    aCTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTttg                       >  1:3414016/1‑91 (MQ=255)

                                                                    aCTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTttg                       >  2:1324294/1‑91 (MQ=255)

                                                                     cTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTttgt                      <  2:2624623/91‑1 (MQ=255)

                                                                     cTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTttgt                      >  1:523425/1‑91 (MQ=255)

                                                                         tGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTa                  >  1:3634838/1‑91 (MQ=255)

                                                                          ggAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTAt                 >  2:3403390/1‑91 (MQ=255)

                                                                           gAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGCACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATg                >  1:3071786/1‑91 (MQ=255)

                                                                           gAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATg                >  2:1003362/1‑91 (MQ=255)

                                                                           gAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATg                <  2:3724726/91‑1 (MQ=255)

                                                                           gAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATg                <  1:2422462/91‑1 (MQ=255)

                                                                            aaTGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATgg               >  1:188771/1‑91 (MQ=255)

                                                                            aaTGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATgg               >  1:2870168/1‑91 (MQ=255)

                                                                            aaTGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATgg               <  1:680986/91‑1 (MQ=255)

                                                                             aTGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGga              >  1:3543245/1‑91 (MQ=255)

                                                                                ttgtttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATCTTTTGTTGTATGGagaa           >  1:3325960‑M2/10‑91 (MQ=255)

                                                                                ttgtttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGagaa           <  2:3476850‑M2/82‑1 (MQ=255)

                                                                                ttgtttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGagaa           >  2:18728‑M2/10‑91 (MQ=255)

                                                                                   tttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAgaagaa        >  2:1966296‑M2/7‑91 (MQ=255)

                                                                                    ttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGaaa       >  1:3590179‑M2/6‑91 (MQ=255)

                                                                                     tgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGGAGAAAt      >  1:611654‑M2/5‑91 (MQ=255)

                                                                                       aaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGa    <  2:387038‑M2/89‑1 (MQ=255)

GGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATA  >  USA300TCH1516_ALE/553168‑553347

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.