BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	633311 =	143 (0.750)	16 (0.100)	12/134	NT	10.8%	intergenic (+35/‑509)	proP/yhfT	Proline/betaine transporter/putative acyl‑‑CoA ligase YhfT
*	?	USA300TCH1516_ALE	633354 =	146 (0.920)	16 (0.100)	12/134	NT	10.8%	intergenic (+78/‑466)	proP/yhfT	Proline/betaine transporter/putative acyl‑‑CoA ligase YhfT

Only 100 of 276 total aligned reads displayed.

ACGTAAGAATTAGAGATTTTAATAAAAAGTATAAATCAATCGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCAATGATTATCGCAATGGGGGAAAGAGGGG  >  USA300TCH1516_ALE/633264‑633444

  gTAAGAATTAGAGATTTTAATAAAAAGTATAAATCAATCGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCttttt                                                                                          >  2:2716314/1‑91 (MQ=255)

     aGAATTAGAGATTTTAATAAAAAGTATAAATCAATCGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTaaa                                                                                       >  1:1159106/1‑91 (MQ=255)

      gAATTAGAGATTTTAATAAAAAGTATAAATCAATCGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAAt                                                                                      <  2:14618/91‑1 (MQ=255)

      gAATTAGAGATTTTAATAAAAAGTATAAATCAATCGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAAt                                                                                      >  1:1821673/1‑91 (MQ=255)

       aaTTAGAGATTTTAATAAAAAGTATAAATCAATCGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAAtt                                                                                     <  2:1887657/91‑1 (MQ=255)

        aTTAGAGATTTTAATAAAAAGTATAAATCAATCGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTg                                                                                    >  2:375766/1‑91 (MQ=255)

          tAGAGACCTTACTAAAAAGTACAAATCAATCGTATATAAGCACTTTAAAGCTACTAGGTTCTGCTAACTTTAAAGTGCTCTTTAAATagag                                                                                  >  2:2582441/1‑91 (MQ=255)

               aTTTTAATAAAAAGTATAAATCAATCGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTg                                                                             <  1:3467303/91‑1 (MQ=255)

                ttttAATAAAAAGTATAAATCAATCGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGt                                                                            <  2:285768/91‑1 (MQ=255)

                   taataaAAAGTATAAATCAATCGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAAt                                                                         <  1:3807078/91‑1 (MQ=255)

                    aataaAAAGTATAAATCAATCGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAAtt                                                                        <  2:80553/91‑1 (MQ=255)

                    aataaAAAGTATAAATCAATCGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAAtt                                                                        >  1:2178255/1‑91 (MQ=255)

                     ataaAAAGTATAAATCAATCGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTa                                                                       >  2:3681685/1‑91 (MQ=255)

                       aaaaaGTATAAATCAATCGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGc                                                                     <  1:442137/91‑1 (MQ=255)

                       aaaaaGTATAAATCAATCGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGc                                                                     <  1:1553467/91‑1 (MQ=255)

                           aGTATAAATCAATCGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGta                                                                 >  1:2875376/1‑91 (MQ=255)

                            gTATAAATCAATGGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGtaa                                                                >  1:2967003/1‑91 (MQ=255)

                            gTATAAATCAATCGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGtaa                                                                >  1:208153/1‑91 (MQ=255)

                            gTATAAATCAATCGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGtaa                                                                >  1:2531307/1‑91 (MQ=255)

                             tataAATCAATCGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGtaat                                                               <  2:3505592/91‑1 (MQ=255)

                             tataAATCAATCGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGtaa                                                                <  2:1918835/90‑1 (MQ=255)

                              ataAATCAATCGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGtaata                                                              >  1:866571/1‑91 (MQ=255)

                               taAATCAATCGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGtaataa                                                             <  1:3385351/91‑1 (MQ=255)

                                 aatcaatcGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAg                                                           <  2:334580/91‑1 (MQ=255)

                                 aatcaatcGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAg                                                           <  2:615719/91‑1 (MQ=255)

                                  atcaatcGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGt                                                          <  2:2193526/91‑1 (MQ=255)

                                  atcaatcGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGt                                                          >  1:2200582/1‑91 (MQ=255)

                                  atcaatcGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGt                                                          >  2:3067025/1‑91 (MQ=255)

                                     aatcGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGtttt                                                       <  2:1329101/91‑1 (MQ=255)

                                     aatcGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGtttt                                                       <  2:1958697/91‑1 (MQ=255)

                                     aatcGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGtttt                                                       <  2:169853/91‑1 (MQ=255)

                                      atcGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGttttt                                                      >  2:927547/1‑91 (MQ=255)

                                      atcGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGttttt                                                      >  1:2223239/1‑91 (MQ=255)

                                       tcGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTg                                                     <  2:1609442/91‑1 (MQ=255)

                                           atataAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGtata                                                 <  1:3044466/91‑1 (MQ=255)

                                           atataAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGtata                                                 >  1:3535009/1‑91 (MQ=255)

                                            tataAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGtatat                                                >  2:19517/1‑91 (MQ=255)

                                              taAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATAc                                              >  1:2452502/1‑91 (MQ=255)

                                               aagcactttaaagttagcagaacctactagctttaaagtgcttTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACa                                             >  1:2964373‑M2/44‑91 (MQ=255)

                                               AAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACa                                             <  1:2095249‑M1/91‑1 (MQ=255)

                                                AGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACAt                                            <  1:2734374‑M1/91‑1 (MQ=255)

                                                 gcactttaaagttagcagaacctactagctttaaagtgcttTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATa                                           >  1:186195‑M2/42‑91 (MQ=255)

                                                   ACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATaaa                                         >  1:3237771‑M1/1‑91 (MQ=255)

                                                    CTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAAc                                        >  1:1059982‑M1/1‑91 (MQ=255)

                                                     TTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAAcc                                       <  2:369845‑M1/91‑1 (MQ=255)

                                                      ttaaagttagcagaacctactagctttaaagtgcttTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAAccc                                      >  1:505905‑M2/37‑91 (MQ=255)

                                                        AAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAAccccc                                    <  2:2165489‑M1/91‑1 (MQ=255)

                                                        AAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAAccccc                                    >  1:1483934‑M1/1‑91 (MQ=255)

                                                        AAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAAccccc                                    <  1:3755608‑M1/91‑1 (MQ=255)

                                                        AAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAAccccc                                    <  2:1307448‑M1/91‑1 (MQ=255)

                                                         aagttagcagaacctactagctttaaagtgcttTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCa                                   >  2:2671530‑M2/34‑91 (MQ=255)

                                                         AAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCa                                   >  2:314283‑M1/1‑91 (MQ=255)

                                                         AAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCa                                   <  2:518093‑M1/91‑1 (MQ=255)

                                                          AGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCAc                                  <  2:3875818‑M1/91‑1 (MQ=255)

                                                          AGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCAc                                  >  2:2953891‑M1/1‑91 (MQ=255)

                                                           gttagcagaacctactagctttaaagtgcttTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACt                                 >  2:1126097‑M2/32‑91 (MQ=255)

                                                           GCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACt                                 <  1:1276991‑M1/91‑1 (MQ=255)

                                                             tagtagGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGc                               <  1:2141855/91‑1 (MQ=255)

                                                             tagtagGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGc                               <  1:2646541/91‑1 (MQ=255)

                                                              agtagGTTCTGCTAACTTTAAAGTGCTTTTTAAATTg                                                                                    <  2:2355417/37‑1 (MQ=255)

                                                              agtagGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCa                              >  1:2367113/1‑91 (MQ=255)

                                                               gtagGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCaa                             <  1:1307448/91‑1 (MQ=255)

                                                               gtagGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCaa                             <  2:1067292/91‑1 (MQ=255)

                                                               gtagGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCaa                             <  1:992535/91‑1 (MQ=255)

                                                                tagGTTCTGCTAACTTTAAAGTGCTTTTTGAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCAAt                            >  1:477288/1‑91 (MQ=255)

                                                                 agGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCAATg                           >  2:658784/1‑91 (MQ=255)

                                                                 agGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCAATg                           >  2:441369/1‑91 (MQ=255)

                                                                  ggTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCAATGa                          >  2:3462115/1‑91 (MQ=255)

                                                                  ggTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCAATGa                          >  1:1329390/1‑91 (MQ=255)

                                                                  ggTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCAATGa                          >  1:765325/1‑91 (MQ=255)

                                                                  gaacctactagcttttaagtgcttTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCAATGa                          >  2:2969518‑M2/25‑91 (MQ=255)

                                                                   gTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCAATGAt                         <  2:1266713/91‑1 (MQ=255)

                                                                    ttCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCAATGAtt                        >  2:277210/1‑91 (MQ=255)

                                                                    ttCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCAATGAtt                        <  1:3681685/91‑1 (MQ=255)

                                                                      cTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCAATGATTAt                      <  2:3027284/91‑1 (MQ=255)

                                                                      cTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCAATGATTAt                      <  1:1928225/91‑1 (MQ=255)

                                                                       tGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCAATGATTATc                     >  1:2320846/1‑91 (MQ=255)

                                                                       tGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCAATGATTATc                     <  1:3092118/91‑1 (MQ=255)

                                                                        gCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCAATGATTATCg                    >  2:204978/1‑91 (MQ=255)

                                                                         cTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCAATGATTATCGc                   <  2:3799676/91‑1 (MQ=255)

                                                                           aaCTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCAATGATTATCGCaa                 <  1:416158/91‑1 (MQ=255)

                                                                            aCTTGAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCAATGATTATCGCAAt                <  2:72404/91‑1 (MQ=255)

                                                                             ctttaaagtgcttTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCAATGATTATCGCAATg               >  1:2026130‑M2/14‑91 (MQ=255)

                                                                                taaagtgcttTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCAATGATTATAGCAATgggg            >  1:3708535‑M2/11‑91 (MQ=255)

                                                                                 aaagtgcttTTTAAATTGAGAACTGTAATTAGCCGtaataa                                                             >  1:1553228‑M2/10‑41 (MQ=255)

                                                                                 aaagtgcttTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCAATGATTATCGCAATggggg           >  1:1243796‑M2/10‑91 (MQ=255)

                                                                                  aagtgcttTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCAATGATTATCGCAATGGGGGa          >  1:2766609‑M2/9‑91 (MQ=255)

                                                                                  aagcgcttTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCAATGATTATCGCAATGGGGGa          >  2:3436928‑M2/9‑91 (MQ=255)

                                                                                   agtgcttTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATa                                           >  2:360538‑M2/8‑57 (MQ=255)

                                                                                   agtgcttTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCAATGATTATCGCAATGGGGGaa         >  1:3298237‑M2/8‑91 (MQ=255)

                                                                                   agtgcttTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCAATGATTATCGCAATGGGGGaa         >  1:3169399‑M2/8‑91 (MQ=255)

                                                                                   agtgcttTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCAATGATTATCGCAATGGGGGaa         >  2:1300636‑M2/8‑91 (MQ=255)

                                                                                   agtgcttTTTAAATTGAGAACTGTAATTAGCAGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCAATGATTATCACAATGGGGGaa         >  2:2961099‑M2/8‑91 (MQ=255)

                                                                                   aGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGCTTTTGTATATACATAAACCCCCATTGCGATAATCATTGCAGTgggggtt         <  2:3413570/91‑3 (MQ=21)

                                                                                     tgcttTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCAATg                           >  2:3162614‑M2/6‑71 (MQ=255)

                                                                                      gcttTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCAATGATTATCGCAATGGGGGAAaga      >  2:55040‑M2/5‑91 (MQ=255)

                                                                                      gcttTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCAATGATTATCGCAATGGGGGAAaga      <  2:1159106‑M2/87‑1 (MQ=255)

                                                                                       cttTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCTATGATTATCGCAATGGGGGAAagag     >  2:2442768‑M2/4‑91 (MQ=255)

                                                                                        ttTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCAATGATTATCGCAATGGGGGAAAGAgg    >  1:1035982‑M2/3‑91 (MQ=255)

                                                                                         tTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCAATGATTATCGCAATGGGGGAAAGAggg   <  1:386839‑M2/90‑1 (MQ=255)

ACGTAAGAATTAGAGATTTTAATAAAAAGTATAAATCAATCGTATATAAGCACTTTAAAGCTAGTAGGTTCTGCTAACTTTAAAGTGCTTTTTAAATTGAGAACTGTAATTAGCCGTAATAAAGTTTTTGTATATACATAAACCCCCACTGCAATGATTATCGCAATGGGGGAAAGAGGGG  >  USA300TCH1516_ALE/633264‑633444

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.