| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 720538 = | 154 (0.810) | 18 (0.100) | 12/148 | NT | 11.1% | intergenic (+148/‑377) | nupG/USA300HOU_RS03495 | Purine nucleoside transport protein NupG/hypothetical protein |
| ? | USA300TCH1516_ALE | 720578 = | 147 (0.830) | intergenic (+188/‑337) | nupG/USA300HOU_RS03495 | Purine nucleoside transport protein NupG/hypothetical protein | |||||
Only 100 of 207 total aligned reads displayed.
TTGATATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAATTTGTTTTGTTATTATAAACAACAC > USA300TCH1516_ALE/720488‑720668 | tGATATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATgg < 2:15115/91‑1 (MQ=255) gactgtacctagtccttactgtcatatgtacaataatattcatttcccATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATggg > 1:382562‑M1/49‑91 (MQ=255) gactgtacctagtccttactgtcatatgtacaataatattcatttcccATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATggg > 1:382513‑M1/49‑91 (MQ=255) atatAAATGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATAGGa < 2:3443737/91‑1 (MQ=255) taAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAAt > 2:101923/1‑91 (MQ=255) ggTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAat > 1:1460809/1‑91 (MQ=255) ggTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAat < 2:2383030/91‑1 (MQ=255) ctagtccttactgtcatatgtacaataatattcatttcccATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAat > 2:3003426‑M1/41‑91 (MQ=255) tATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAatat < 2:2379048/91‑1 (MQ=255) aTTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAAtatt < 2:468718/91‑1 (MQ=255) ttAAAAATATTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAAtattat > 1:3745185/1‑91 (MQ=255) tAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATattatt > 2:581057/1‑91 (MQ=255) aaaTATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTg < 1:2113740/91‑1 (MQ=255) aaaTATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTg < 2:907783/91‑1 (MQ=255) aaaTATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTg < 2:1067082/91‑1 (MQ=255) aaTATTTTTAAAGTTACCGAAATTGAAGCATTATAAACACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGt > 1:3274024/1‑91 (MQ=255) aaTATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGt > 1:2242751/1‑91 (MQ=255) atTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACa < 1:2170178/91‑1 (MQ=255) atTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACa < 2:631903/91‑1 (MQ=255) tttAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACatat > 1:1927650/1‑91 (MQ=255) tttAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACatat > 2:2090279/1‑91 (MQ=255) ttAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATg > 1:1046035/1‑91 (MQ=255) aaaGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGAc > 2:836315/1‑91 (MQ=255) gTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAGTACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGt < 1:3871012/91‑1 (MQ=255) gTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGt < 1:3671327/91‑1 (MQ=255) ttACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTa > 1:3130108/1‑91 (MQ=255) tACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTaa < 2:2216195/91‑1 (MQ=255) tACCGAAATTGAAGCAGTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTaa < 2:3711973/91‑1 (MQ=255) aCCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAg > 1:1217091/1‑91 (MQ=255) aCCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAg < 1:1281445/91‑1 (MQ=255) aCCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTGTATGGGAGATGAATATTATTGTACATATGACAGTAAg < 1:2104252/91‑1 (MQ=255) ccGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAgg > 1:774976/1‑91 (MQ=255) ccGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAgg > 1:2031804/1‑91 (MQ=255) taatattcatttcccATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGa > 2:3111590‑M1/16‑91 (MQ=255) gAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGAc < 1:1802019/91‑1 (MQ=255) aaaTTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACt > 2:3254270/1‑91 (MQ=255) aaTTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTa < 1:2472717/91‑1 (MQ=255) ttGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAgg > 1:3653498/1‑91 (MQ=255) gAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTa > 2:2238725/1‑91 (MQ=255) gAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTa < 2:473286/91‑1 (MQ=255) aGCATTATAAGACCCAAGTGCACATGGTAATACACTTGGCTCTTATGGGAAATGAATATTATGGTACATATGACAGCACGGACTAGGTACa > 2:68244/1‑91 (MQ=255) aGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACa > 1:3640386/1‑91 (MQ=255) aGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACa > 1:816329/1‑91 (MQ=255) cATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGt > 2:317655/1‑91 (MQ=255) cATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGt > 1:3091103/1‑91 (MQ=255) aTTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTc > 2:1344207/1‑91 (MQ=255) ttATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCa < 2:2484254/91‑1 (MQ=255) tataAAATCCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCAt < 1:3044678/91‑1 (MQ=255) ATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATa < 1:3503153‑M1/91‑1 (MQ=255) ATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATa < 1:1502722‑M1/91‑1 (MQ=255) TAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAg > 2:964443‑M1/1‑91 (MQ=255) AAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGt < 2:3264365‑M1/91‑1 (MQ=255) AAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGt < 1:2756701‑M1/91‑1 (MQ=255) AAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGt < 2:2127382‑M1/91‑1 (MQ=255) aaagccaagtgtattaccatgtgcacttggtttttatGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTa > 2:3687747‑M2/38‑91 (MQ=255) AAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTAc < 2:2786559‑M1/91‑1 (MQ=255) AAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTAc < 1:564601‑M1/91‑1 (MQ=255) AACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACt < 1:1825925‑M1/91‑1 (MQ=255) ccaagtgtattaccatgtgcacttggtttttatGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTc > 1:357167‑M2/34‑91 (MQ=255) caagtgtattaccatgtgcacttggtttttatGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCa < 2:198503‑M2/49‑1 (MQ=255) caagtgtattaccatgtgcacttggtttttatGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCg > 2:1741117‑M2/33‑91 (MQ=255) cAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCg > 2:1938315/1‑91 (MQ=255) cAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCg < 1:3779266/91‑1 (MQ=255) aagtgtattaccatgtgcacttggcttttatGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGa > 2:3127894‑M2/32‑91 (MQ=255) aaGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGa < 2:1462747/91‑1 (MQ=255) aaGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGa > 1:2966981/1‑91 (MQ=255) aGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAg < 1:455035/91‑1 (MQ=255) gTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGc > 1:2506813/1‑91 (MQ=255) gTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGc > 2:3746764/1‑91 (MQ=255) tGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCa > 1:1570172/1‑91 (MQ=255) gtattaccatgtgcacttggcttttatGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCaa > 2:2635350‑M2/28‑91 (MQ=255) gCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCaa < 2:3343035/91‑1 (MQ=255) gCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCaa > 1:2908046/1‑91 (MQ=255) gCACATGGTAACACACGTGGCTTTGATGGGAAATGAATATTATTGTACATATGACAGTAGGGACTAGGTACAGGCATAGTACTTCGAGCaa < 2:2959213/91‑1 (MQ=255) acaTGGTAATACACTTGGCTTTTCGGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCaaaa < 2:3600018/91‑1 (MQ=255) acaTGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCaaaa < 1:3690259/91‑1 (MQ=255) acaTGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCaaaa < 1:2336257/91‑1 (MQ=255) ttaccatgtgcacttggtttttatGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAAt > 2:2906232‑M2/25‑91 (MQ=255) aTGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTTCATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAAtt < 1:954277/91‑1 (MQ=255) aTGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTAGTTCGAGCAAAAtt > 1:3883839/1‑91 (MQ=255) tGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAAttt > 1:1216892/1‑91 (MQ=255) ggTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAAtttg < 2:1264028/91‑1 (MQ=255) gTAATACACTTGGCTTTTATGGGAAATGAGTATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAAtttgt < 2:3528942/91‑1 (MQ=255) gTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAAtttgt < 1:2837317/91‑1 (MQ=255) tAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAAtttgtt < 2:1872300/91‑1 (MQ=255) aaTACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAAtttgttt < 1:3533749/91‑1 (MQ=255) aaTACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAAtttgttt > 1:2979249/1‑91 (MQ=255) gtgcacttggtttttatGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAAtttgtttt > 1:847333‑M2/18‑91 (MQ=255) acacTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAAtttgttttgt > 1:3251279/1‑91 (MQ=255) acacTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAAtttgttttgt < 1:3548177/91‑1 (MQ=255) acacTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAAtttgttttgt < 2:929901/91‑1 (MQ=255) cacTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAATttgttttgtt > 1:2640065/1‑91 (MQ=255) ttGGCGTTTATGGGAAATGAATAGTAGTGGGCACATGACAGTAAGGACTAGGGACAGTCATAGTACTTCGAGCAAAATTTGTTTTGttagt < 2:1627348/91‑3 (MQ=255) tttatGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAATTTGTTTTGTTATTATAaac < 2:3679068‑M2/86‑1 (MQ=255) tttatGGGAAACGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAATTTGTTTTGTTATTATAaac < 2:3799763‑M2/86‑1 (MQ=255) ttatGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAATTTGTTTTGTTATTATAaaca > 2:2499870‑M2/5‑91 (MQ=255) ttatGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAATTTGTTTTGTTATTATAaaca < 2:2858023‑M2/87‑1 (MQ=255) ttatGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAATTTGTTTTGTTATTATAaaca < 2:3242270‑M2/87‑1 (MQ=255) tGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAATTTGTTTTGTTATTATAAacaaca > 2:2414223‑M2/2‑91 (MQ=255) gggAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAATTTGTTTTGTTATTTTAAACAacac > 2:1371613/1‑91 (MQ=255) | TTGATATAAAGGTATTTAAATATTTTTAAAGTTACCGAAATTGAAGCATTATAAAAACCAAGTGCACATGGTAATACACTTGGCTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAATTTGTTTTGTTATTATAAACAACAC > USA300TCH1516_ALE/720488‑720668 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |