BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	799573 =	172 (0.900)	20 (0.130)	7/128	NT	13.8%	intergenic (+5/‑235)	opuBB/hisC_1	Choline transport system permease protein OpuBB/Histidinol‑phosphate aminotransferase
*	?	USA300TCH1516_ALE	799622 =	113 (0.740)	20 (0.130)	7/128	NT	13.8%	intergenic (+54/‑186)	opuBB/hisC_1	Choline transport system permease protein OpuBB/Histidinol‑phosphate aminotransferase

Only 100 of 231 total aligned reads displayed.

AAAGATTATTTAAAAGCAAAAGGGTTAATCAAATAACGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGACATGTTAAACACAATGTAAGCTATTATGATG  >  USA300TCH1516_ALE/799533‑799712

 aaGATTATTTAAAAGCAAAAGGGTTAATCAAATAACGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTta                                                                                          <  1:730129/91‑1 (MQ=255)

  aGATTATTTAAAAGCAAAAGGGTTAATCAAATAACGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTtat                                                                                         >  1:3595053/1‑91 (MQ=255)

  aGATTATTTAAAAGCAAAAGGGTTAATCAAAGAACGACCAACGCGACATAAGACGCGGAACACCAAATTATATCTTATGTGGCGTTGTtat                                                                                         <  1:3100912/91‑1 (MQ=255)

     ttattTAAAAGCAAAAGGGTTAATCAAATAACGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATAtt                                                                                      <  1:3294493/91‑1 (MQ=255)

      tattTAAAAGCAAAAGGGTTAATCAAATAACGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATAttt                                                                                     >  1:149330/1‑91 (MQ=255)

       attTAAAAGCAAAAGGGTTAATCAAATAACGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTa                                                                                    >  2:326903/1‑91 (MQ=255)

       attTAAAAGCAAAAGGGTTAATCAAATAACGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTa                                                                                    <  1:2802933/91‑1 (MQ=255)

         ttAAAAGCAAAAGGGTTAATCAAATAACGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTaaa                                                                                  <  1:3154616/91‑1 (MQ=255)

         ttAAAAGCAAAAGGGTTAATCAAATAACGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTaaa                                                                                  <  1:3368364/91‑1 (MQ=255)

          tAAAAGCAAAAGGGTTAATCAAATAACGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAAt                                                                                 >  1:2329648/1‑91 (MQ=255)

           aaaaGCAAAAGGGTTAATCAAATAACGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATc                                                                                <  2:524107/91‑1 (MQ=255)

           aaaaGCAAAAGGGTTAATCAAATAACGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATc                                                                                <  2:3624197/91‑1 (MQ=255)

           aaaaGCAAAAGGGTTAATCAAATAACGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATc                                                                                >  1:3671089/1‑91 (MQ=255)

            aaaGCAAAAGGGTTAATCAAATAACGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCt                                                                               <  1:3031409/91‑1 (MQ=255)

            aaaGCAAAAGGGTTAATCAAATAACGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCt                                                                               >  1:2926790/1‑91 (MQ=255)

                cAAAAGGGTTAATCAAATAACGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATaa                                                                           >  1:3197737/1‑91 (MQ=255)

                cAAAAGGGTTAATCAAATAACGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATaa                                                                           <  1:3817019/91‑1 (MQ=255)

                 aaaaGGGTTAATCAAATAACGACCAACGCCACATAAGCTGCGTAACACCAACTTATATCTTATGTAGCGTTGTTATATTTAAATCCATAAt                                                                          >  1:3609350/1‑91 (MQ=255)

                  aaaGGGTTAATCAAATAACGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAAtt                                                                         >  1:3472092/1‑91 (MQ=255)

                  aaaGGGTTAATCAAATAACGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAAtt                                                                         <  1:1775911/91‑1 (MQ=255)

                   aaGGGTTAATCAAATAACGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCAATAATTa                                                                        >  1:1930228/1‑91 (MQ=255)

                    aGGGTTAATCAAATAACGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTAt                                                                       <  2:3011593/91‑1 (MQ=255)

                      ggTTAATCAAATAACGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGt                                                                     >  2:583478/1‑91 (MQ=255)

                       gTTAATCAAATAACGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGtt                                                                    >  2:2219448/1‑91 (MQ=255)

                       gTTAATCAAATAACGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGtt                                                                    >  2:1806148/1‑91 (MQ=255)

                       gTTAATCAAATAACGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGtt                                                                    <  1:548771/91‑1 (MQ=255)

                        ttAATCAAATAACGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTc                                                                   <  1:787224/91‑1 (MQ=255)

                          aaTCAAATAACGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCaa                                                                 >  1:1297723/1‑91 (MQ=255)

                            tCAAATAACGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAAtt                                                               <  2:671732/91‑1 (MQ=255)

                               aaTAACGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTaa                                                            >  1:546200/1‑91 (MQ=255)

                                 tAACGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAAc                                                          <  1:1337479/91‑1 (MQ=255)

                                  aaCGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACa                                                         <  1:3170384/91‑1 (MQ=255)

                                   aCGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACAt                                                        >  2:1364063/1‑91 (MQ=255)

                                   aCGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACAt                                                        >  1:1359685/1‑91 (MQ=255)

                                   aCGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACAt                                                        <  1:1291742/91‑1 (MQ=255)

                                    cGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATg                                                       >  2:2098583/1‑91 (MQ=255)

                                    cGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATg                                                       <  1:1711982/91‑1 (MQ=255)

                                     gACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGc                                                      >  2:877015/1‑91 (MQ=255)

                                      aCCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCa                                                     <  1:3501046/91‑1 (MQ=255)

                                       ccAACGCCACATAAGATGCGTAACACCAAATTATATCTTACGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCaa                                                    >  2:1479560/1‑91 (MQ=255)

                                       acaacgccacataagatataatttggtgttacgcatcttatgtggcgttgTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCaa                                                    >  2:2814087‑M2/51‑91 (MQ=255)

                                         AACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCaata                                                  <  2:1614447‑M1/91‑1 (MQ=255)

                                          ACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCaataa                                                 <  1:1219126‑M1/91‑1 (MQ=255)

                                            GCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATg                                               >  1:655151‑M1/1‑91 (MQ=255)

                                             ccacataagatataatttggtgttacgcatcttatgtggcgttgTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGa                                              >  2:2174231‑M2/45‑91 (MQ=255)

                                             ccacataagatataatttggtgttacgcatcttatgtggcgttgTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGa                                              >  2:242353‑M2/45‑91 (MQ=255)

                                             CCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGa                                              <  1:1122141‑M1/91‑1 (MQ=255)

                                             CCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGa                                              >  1:3773181‑M1/1‑91 (MQ=255)

                                              CACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGAt                                             >  1:3436724‑M1/1‑91 (MQ=255)

                                               ACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGAtt                                            >  2:2553471‑M1/1‑91 (MQ=255)

                                               ACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGAtt                                            <  2:600674‑M1/91‑1 (MQ=255)

                                                CATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTa                                           <  2:2780343‑M1/91‑1 (MQ=255)

                                                CATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTa                                           <  1:1652004‑M1/91‑1 (MQ=255)

                                                 ATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTaa                                          >  2:981915‑M1/1‑91 (MQ=255)

                                                 ATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTaa                                          <  2:111697‑M1/91‑1 (MQ=255)

                                                   AAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTaaaa                                        <  1:801388‑M1/91‑1 (MQ=255)

                                                    agatataatttggtgttacgcatcttatgtggcgttgTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTaaaaa                                       >  2:1968966‑M2/38‑91 (MQ=255)

                                                    agatataatttggtgttacgcatcttatgtggcgttgTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTaaaaa                                       >  1:2429492‑M2/38‑91 (MQ=255)

                                                    AGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTaaaaa                                       >  2:2639125‑M1/1‑91 (MQ=255)

                                                     gatataatttggtgttacgcatcttatgtggcgttgTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTaaaaaa                                      >  2:985799‑M2/37‑91 (MQ=255)

                                                      atataatttggtgttacgcatcttatgtggcgttgTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAat                                     >  2:3085466‑M2/36‑91 (MQ=255)

                                                      atataatttggtgttacgcatcttatgtggcgttgTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAat                                     >  2:3588307‑M2/36‑91 (MQ=255)

                                                      atataatttggtgttacgcatcttatgtggcgttgGTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAat                                     >  1:3881704‑M2/36‑91 (MQ=255)

                                                       TGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAata                                    >  2:274176‑M1/1‑91 (MQ=255)

                                                       TGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAata                                    >  1:1241083‑M1/1‑91 (MQ=255)

                                                       TGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAata                                    >  2:2163656‑M1/1‑91 (MQ=255)

                                                        gCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAatat                                   >  2:3052498/1‑91 (MQ=255)

                                                          gTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGa                                 >  1:1848196/1‑91 (MQ=255)

                                                          gTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGa                                 >  1:1964495/1‑91 (MQ=255)

                                                          gTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGa                                 <  1:901622/91‑1 (MQ=255)

                                                          gTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGa                                 <  1:2500991/91‑1 (MQ=255)

                                                           tAACACCAAATTATATCTTATGTGGTGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGAc                                <  1:3620946/91‑1 (MQ=255)

                                                             acacCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGACAt                              >  1:1591726/1‑91 (MQ=255)

                                                               acCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGACATGt                            <  1:742099/91‑1 (MQ=255)

                                                               acCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATAATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGACATGt                            <  2:3772231/91‑1 (MQ=255)

                                                                 cAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGACATGTTa                          >  1:2031398/1‑91 (MQ=255)

                                                                 cAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGACATGTTa                          >  2:2490755/1‑91 (MQ=255)

                                                                 cAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGACATGTTa                          >  1:1275206/1‑91 (MQ=255)

                                                                 cAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGACATGTTa                          <  2:1468910/91‑1 (MQ=255)

                                                                  aaaTTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGACATGTTaa                         <  2:1102719/91‑1 (MQ=255)

                                                                    tacgcatcttatgtggcgttgTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGACATGTTAAac                       <  1:2174231‑M2/70‑1 (MQ=255)

                                                                    tacgcatcttatgtggcgttgTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGACATGTTAAac                       <  1:242353‑M2/70‑1 (MQ=255)

                                                                    aTTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGACATGTTAAac                       >  2:2945627/1‑91 (MQ=255)

                                                                    aTTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGACATGTTAAac                       >  2:3319057/1‑91 (MQ=255)

                                                                       atatCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGACATGTTAAAcaca                    <  2:3171358/91‑1 (MQ=255)

                                                                        tatCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGACATGTTAAACACaa                   <  1:1684719/91‑1 (MQ=255)

                                                                        tatCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGACATGTTAAACACaa                   <  2:2911652/91‑1 (MQ=255)

                                                                        tatCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGACATGTTAAACACaa                   >  1:2255531/1‑91 (MQ=255)

                                                                        tatCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGACATGTTAAACACaa                   >  1:2726877/1‑91 (MQ=255)

                                                                        tatCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGACATGTTAAACACaa                   >  2:195236/1‑91 (MQ=255)

                                                                          tcttatgtggcgttgTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGACATGTTAAACACAATg                 >  1:2651817‑M2/16‑91 (MQ=255)

                                                                          tcttatgtggcgttgTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGACATGTTAAACACAATg                 >  1:1396382‑M2/16‑91 (MQ=255)

                                                                          tcttatgtcgcgttgTTATATTTAATGCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGACATGTTAAACACAATg                 <  2:3367879‑M2/76‑1 (MQ=255)

                                                                                 tggcgttgTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGACATGTTAAACACAATGTAAGCta          <  1:2780343‑M2/83‑1 (MQ=255)

                                                                                     gttgTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGACATGTTAAACACAATGTAAGCtattat      <  1:863834‑M2/87‑1 (MQ=255)

                                                                                     gttgTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGACATGTTAAACACAATGTAAGCtattat      >  1:3732052‑M2/5‑91 (MQ=255)

                                                                                     gttgTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGACATGTTAAACACAATGTAAGCtattat      >  1:2859198‑M2/5‑91 (MQ=255)

                                                                                        gTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGACATGTTAAACACAATGTAAGCTATTatgat   >  1:1969567‑M2/2‑91 (MQ=255)

                                                                                         ttATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGACATGTTAAACACAATGTAAGCTATTatgatg  >  2:808467/1‑91 (MQ=255)

                                                                                         ttATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGACATGTTAAACACAATGTAAGCTATTatgatg  <  2:927505/91‑1 (MQ=255)

AAAGATTATTTAAAAGCAAAAGGGTTAATCAAATAACGACCAACGCCACATAAGATGCGTAACACCAAATTATATCTTATGTGGCGTTGTTATATTTAAATCTATAATTATGTTCAATTTAAACATGCAATAATGATTAAAAAATATGACATGTTAAACACAATGTAAGCTATTATGATG  >  USA300TCH1516_ALE/799533‑799712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.