BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	858374 =	153 (0.800)	14 (0.080)	12/146	NT	8.9%	intergenic (+69/‑70)	gapA1/pgk	Glyceraldehyde‑3‑phosphate dehydrogenase 1/Phosphoglycerate kinase
*	?	USA300TCH1516_ALE	858405 =	148 (0.850)	14 (0.080)	12/146	NT	8.9%	intergenic (+100/‑39)	gapA1/pgk	Glyceraldehyde‑3‑phosphate dehydrogenase 1/Phosphoglycerate kinase

Only 100 of 231 total aligned reads displayed.

TTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACAGTCCTAG  >  USA300TCH1516_ALE/858318‑858495

ttttATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTAtttt                                                                                         <  2:2834534/91‑1 (MQ=255)

 tttATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTAttttt                                                                                        <  1:2210562/91‑1 (MQ=255)

 caatttttttagccatggtgtttcctccttgtaattaggaaattttatataaaaaTAAGCGGGGAGCACAAACGCTTCTCCGCTTAttttt                                                                                        >  1:28719‑M1/56‑91 (MQ=255)

  ttATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTta                                                                                       <  2:3873810/91‑1 (MQ=255)

   tATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTtat                                                                                      >  1:1563515/1‑91 (MQ=255)

   tATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTtat                                                                                      >  1:259857/1‑91 (MQ=255)

    aTTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTtata                                                                                     <  1:934721/91‑1 (MQ=255)

    aTTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTtata                                                                                     <  2:2586396/91‑1 (MQ=255)

    aTTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTtata                                                                                     <  1:934110/91‑1 (MQ=255)

     ttttttagccatggtgtttcctccttgttattaggaaagtttatataaaaaTAAGCGGGGAGCACAAACGCTGCTCCGCTTATTTTtatat                                                                                    >  1:1600505‑M1/52‑91 (MQ=255)

     ttCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTtatat                                                                                    <  2:203081/91‑1 (MQ=255)

     ttCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTtatat                                                                                    >  2:349752/1‑91 (MQ=255)

     ttCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTtatat                                                                                    >  1:83745/1‑91 (MQ=255)

     ttCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTtatat                                                                                    <  2:727117/91‑1 (MQ=255)

      tttttagccatggtgtttcctccttgtaattaggaaattttatataaaaaTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTtatata                                                                                   >  2:1804413‑M1/51‑91 (MQ=255)

      tttttagccatggtgtttcctccttgtaattaggaaattttatataaaaaTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTtatata                                                                                   >  2:1804453‑M1/51‑91 (MQ=255)

      tCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTCATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTtatata                                                                                   <  1:3072354/91‑1 (MQ=255)

        aaaTACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATaaa                                                                                 <  1:1742808/91‑1 (MQ=255)

        aaaTACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTCATATaaa                                                                                 >  1:1957421/1‑91 (MQ=255)

         aaTACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATaaaa                                                                                <  2:1539844/91‑1 (MQ=255)

           tACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAAtt                                                                              >  1:390037/1‑91 (MQ=255)

            aCGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAAttt                                                                             <  1:3538875/91‑1 (MQ=255)

               cTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCt                                                                          >  2:2908174/1‑91 (MQ=255)

               cTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCACCGCTTATTTTTATATAAAATTTCCt                                                                          <  1:766113/91‑1 (MQ=255)

                 aGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTaa                                                                        >  1:1994247/1‑91 (MQ=255)

                  gTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAAt                                                                       <  2:2603550/91‑1 (MQ=255)

                  gTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAAt                                                                       <  1:2896735/91‑1 (MQ=255)

                    gCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTa                                                                     >  1:886872/1‑91 (MQ=255)

                    gCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTa                                                                     >  1:887496/1‑91 (MQ=255)

                      tCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACa                                                                   <  2:3295903/91‑1 (MQ=255)

                      tCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACa                                                                   <  2:17241/91‑1 (MQ=255)

                      tCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACa                                                                   <  1:7097/91‑1 (MQ=255)

                      tCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACa                                                                   <  2:3542923/91‑1 (MQ=255)

                          aaCTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAagga                                                               <  2:1877530/91‑1 (MQ=255)

                           aCTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAaggag                                                              >  2:2116535/1‑91 (MQ=255)

                               tttAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGaaa                                                          <  2:1239040/91‑1 (MQ=255)

                                   gCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACAcc                                                      >  2:1107770/1‑91 (MQ=255)

                                   gCATTAATTAAAGCTTATGAGTAAGCAGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACAcc                                                      >  2:2217234/1‑91 (MQ=255)

                                    cATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCa                                                     >  1:2085476/1‑91 (MQ=255)

                                     attaattaAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCAt                                                    >  1:2959480/1‑91 (MQ=255)

                                      ttaattaaAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATg                                                   >  1:2686441/1‑91 (MQ=255)

                                       taattaaAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATgg                                                  >  1:2258854/1‑91 (MQ=255)

                                       taattaaAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATgg                                                  >  2:3726132/1‑91 (MQ=255)

                                        aattaaAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGc                                                 >  1:3649658/1‑91 (MQ=255)

                                         attaaAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCt                                                <  2:3649658/91‑1 (MQ=255)

                                           taaAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTaa                                              <  2:3646726/91‑1 (MQ=255)

                                              aGCTTATGAGTAAGCGGGGAGCACAAGCGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACAGCATGGCTaaaaa                                           >  2:3220592/1‑91 (MQ=255)

                                              aGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTaacaa                                           >  2:3865543/1‑91 (MQ=255)

                                              aGCTTATGAGTAAGCGGGAAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACAATGAATaaaaa                                           <  2:3323689/91‑1 (MQ=255)

                                                tataaaaataagcggagaagcgtttgtgctccccgcttaTTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTaaaaaaa                                         >  1:1824321‑M2/40‑91 (MQ=255)

                                                 ttATGAGTAAGCAGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAAt                                        <  2:435391/91‑1 (MQ=255)

                                                  tATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAAtt                                       >  2:1201376/1‑91 (MQ=255)

                                                    tGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGt                                     <  1:1788240/91‑1 (MQ=255)

                                                    tGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGt                                     <  1:2193473/91‑1 (MQ=255)

                                                     gAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGtt                                    >  1:311134/1‑91 (MQ=255)

                                                      aGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGttt                                   >  1:2305099/1‑91 (MQ=255)

                                                        TAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCt                                 >  1:2400043‑M1/1‑91 (MQ=255)

                                                        TAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCt                                 >  2:1321215‑M1/1‑91 (MQ=255)

                                                         AAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTg                                >  1:573870‑M1/1‑91 (MQ=255)

                                                          AGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTACTTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGa                               <  2:3412087‑M1/91‑1 (MQ=255)

                                                          AGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGa                               <  1:2020549‑M1/91‑1 (MQ=255)

                                                          AGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGa                               >  2:2142595‑M1/1‑91 (MQ=255)

                                                           GCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGAt                              >  1:3850347‑M1/1‑91 (MQ=255)

                                                            CGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGAtt                             <  1:3030178‑M1/91‑1 (MQ=255)

                                                            CGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGAtt                             >  1:1367552‑M1/1‑91 (MQ=255)

                                                            CGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGAtt                             <  1:399280‑M1/91‑1 (MQ=255)

                                                             GGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGAttt                            <  1:2494600‑M1/91‑1 (MQ=255)

                                                             GGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGAttt                            >  2:2187638‑M1/1‑91 (MQ=255)

                                                             GGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGAttt                            <  2:3472704‑M1/91‑1 (MQ=255)

                                                              GGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAATCCCCATGGCTAAAAAAATTGTTTCTGATTTa                           <  1:3106393‑M1/91‑1 (MQ=255)

                                                               ggAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAg                          <  2:1424660/91‑1 (MQ=255)

                                                               ggAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAg                          <  1:1445246/91‑1 (MQ=255)

                                                               ggAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAg                          <  2:2824871/91‑1 (MQ=255)

                                                               agaagcgtttgtgctccccgcttaTTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAg                          >  2:1074784‑M2/25‑91 (MQ=255)

                                                                gAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGa                         >  2:1084174/1‑91 (MQ=255)

                                                                 aGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGAt                        >  2:3068487/1‑91 (MQ=255)

                                                                  agcgtttgtgctccccgcttaTTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATc                       >  1:1100234‑M2/22‑91 (MQ=255)

                                                                   gcgtttgtgctccccgcttaTTTTTATATAAAATTTCCTAATTACACGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCt                      >  2:1416017‑M2/21‑91 (MQ=255)

                                                                   cacaAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCt                      <  1:2961513/91‑1 (MQ=255)

                                                                    acaAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCtt                     >  2:2781616/1‑91 (MQ=255)

                                                                    acaAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCtt                     >  1:1059379/1‑91 (MQ=255)

                                                                    acaAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCtt                     >  2:1781365/1‑91 (MQ=255)

                                                                     caAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTa                    <  2:2468753/91‑1 (MQ=255)

                                                                      aaaCGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTaa                   <  1:2794761/91‑1 (MQ=255)

                                                                       aaCGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTaaa                  <  1:592465/91‑1 (MQ=255)

                                                                        aCGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAg                 <  1:3584643/91‑1 (MQ=255)

                                                                          gCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGt               <  2:1662322/91‑1 (MQ=255)

                                                                            ttCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTaa             <  2:3229881/91‑1 (MQ=255)

                                                                             tctcCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTaaa            >  2:3248816/1‑91 (MQ=255)

                                                                             tctcCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTaaa            >  2:2566084/1‑91 (MQ=255)

                                                                               tcCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAAc          <  2:801588/91‑1 (MQ=255)

                                                                                ccgcttaTTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACa         <  1:3412087‑M2/84‑1 (MQ=255)

                                                                                 cgcttaTTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACAg        <  2:2298247‑M2/85‑1 (MQ=255)

                                                                                  gcttaTTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACAGt       >  2:2232466‑M2/6‑91 (MQ=255)

                                                                                   cttaTTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACAGTc      >  2:1012652‑M2/5‑91 (MQ=255)

                                                                                    ttaTTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACAGTcc     >  2:2660667‑M2/4‑91 (MQ=255)

                                                                                    ttaTTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACAGTcc     >  2:2443043‑M2/4‑91 (MQ=255)

                                                                                     taTTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACAGTCCt    <  1:1624769‑M2/89‑1 (MQ=255)

                                                                                      aTTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACAGTCCTa   <  1:2570852‑M2/90‑1 (MQ=255)

                                                                                       tttttATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACAGTCCTAg  >  2:177259/1‑91 (MQ=255)

TTTTATTCAAATACGCTAGTGCTCAGAACTATTTAGCATTAATTAAAGCTTATGAGTAAGCGGGGAGCACAAACGCTTCTCCGCTTATTTTTATATAAAATTTCCTAATTACAAGGAGGAAACACCATGGCTAAAAAAATTGTTTCTGATTTAGATCTTAAAGGTAAAACAGTCCTAG  >  USA300TCH1516_ALE/858318‑858495

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.