BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	954695 =	155 (0.810)	51 (0.290) +GGCAAG	11/148	NT	24.7%	intergenic (+349/+154)	gluD/glpQ_1	NAD‑specific glutamate dehydrogenase/Glycerophosphodiester phosphodiesterase
*	?	USA300TCH1516_ALE	1873938 =	181 (0.950)	51 (0.290) +GGCAAG	11/148	NT	24.7%	intergenic (‑614/+136)	USA300HOU_RS09300/USA300HOU_RS09305	Putative dipeptidase/hypothetical protein

Only 100 of 265 total aligned reads displayed.

TCTTTCTATATGCATATTAGCTATGACTAACGATAAAGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGGGTGGGACGACGAAATAAATTTTGCTAAAAT  >  USA300TCH1516_ALE/1873848‑1874028

tctttctATATGCATATTAGCTATGACTAACGATAAAGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCagtag                                                                                              >  2:3286395/1‑91 (MQ=255)

 ctttctATATGCATATTAGCTATGACTAACGATAAAGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCagtagt                                                                                             <  2:538650/91‑1 (MQ=255)

  tttctATATGCATATTAGCTATGACTAACGATAAAGAGCCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGtt                                                                                            <  1:3475560/91‑1 (MQ=255)

  tttctATATGCATATTAGCTATGACTAACGATAAAGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGtt                                                                                            >  1:1392454/1‑91 (MQ=255)

  tttctATATGCATATTAGCTATGACTAACGATAAAGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGtt                                                                                            >  1:708129/1‑91 (MQ=255)

   ttctATATGCATATTAGCTATGACTAACGATAAAGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTg                                                                                           >  2:1140904/1‑91 (MQ=255)

    tctATATGCATATTAGCTATGACTAACGATAAAGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGa                                                                                          <  1:652442/91‑1 (MQ=255)

        tatGCATATTAGCTATGACTAACGATAAAGAACCTGAAACACTAATAAATGTCCGATAGTTTACAATATTATATTGGCAGTAGTTGACt‑ga                                                                                     >  2:3827777/1‑91 (MQ=255)

          tGCATATTAGCTATGACTAACGATAAAGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACt‑gaa‑t                                                                                  <  1:2496234/91‑1 (MQ=255)

             atatTAGCTATGACTAACGATAAAGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACt‑gaa‑tgaa                                                                               <  2:3043952/91‑1 (MQ=255)

               atTAGCTATGACTAACGATAAAGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGaaaa                                                                             <  2:255626/91‑1 (MQ=255)

               atTAGCTATGACTAACGATAAAGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGaaaa                                                                             <  2:2620019/91‑1 (MQ=255)

                ttAGCTATGACTAACGATAAAGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAAt                                                                            >  2:145047/1‑91 (MQ=255)

                ttAGCTATGACTAACGATAAAGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAAt                                                                            >  1:3252385/1‑91 (MQ=255)

                   gCTATGACTAACGATAAAGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACg                                                                         >  1:100031/1‑91 (MQ=255)

                    cTATGACTAACGATAAAGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGc                                                                        >  2:2695554/1‑91 (MQ=255)

                    cTATGACTAACGATAAAGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGc                                                                        >  1:555365/1‑91 (MQ=255)

                    cTATGACTAACGATAAAGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGc                                                                        >  2:804378/1‑91 (MQ=255)

                      aTGACTAACGATAAAGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCtt                                                                      >  2:1230426/1‑91 (MQ=255)

                      aTGACTAACGATAAAGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCtt                                                                      >  2:1230304/1‑91 (MQ=255)

                         aCTAACGATAAAGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTa                                                                   <  1:1625215/91‑1 (MQ=255)

                         aCTAACGATAAAGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTa                                                                   >  2:3626478/1‑91 (MQ=255)

                          cTAACGATAAAGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTaa                                                                  <  2:208026/91‑1 (MQ=255)

                           tAACGATAAAGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAAc                                                                 <  2:2068718/91‑1 (MQ=255)

                             aCGATAAAGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACaa                                                               <  2:2247955/91‑1 (MQ=255)

                              cGATAAAGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAg                                                              <  1:2591077/91‑1 (MQ=255)

                              cGATAAAGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAg                                                              >  1:2390907/1‑91 (MQ=255)

                              cGATAAAGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAg                                                              <  1:2888821/91‑1 (MQ=255)

                               gATAAAGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGc                                                             <  1:894206/91‑1 (MQ=255)

                               gATAAAGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGc                                                             <  1:1550600/91‑1 (MQ=255)

                                aTAAAGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCt                                                            >  1:3667971/1‑91 (MQ=255)

                                 tAAAGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCtt                                                           <  2:700106/91‑1 (MQ=255)

                                  aaaGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCttt                                                          <  1:3299963/91‑1 (MQ=255)

                                   aaGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCtttt                                                         >  1:30263/1‑91 (MQ=255)

                                   aaGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCtttt                                                         <  2:3885162/91‑1 (MQ=255)

                                    aGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCttttt                                                        >  2:587717/1‑91 (MQ=255)

                                    aGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCttttt                                                        >  1:3869517/1‑91 (MQ=255)

                                      ggacagaaatgatattttcgcaaaatttatttcgtcgtcccaccccagcaagGTTGACTAGAATTGAAAATGCGCTTGTAACAAGCttttt                                                        <  1:214503‑M2/39‑1 (MQ=255)

                                      aaCCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCACTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTc                                                      <  1:3357458/91‑1 (MQ=255)

                                       aCCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCa                                                     <  1:1741132/91‑1 (MQ=255)

                                         cagaaatcatattttagcaaaatttatttcgtcgtcccaccccggcaagGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAAt                                                   <  1:231804‑M2/42‑1 (MQ=255)

                                         cTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAAt                                                   >  2:2160044/1‑91 (MQ=255)

                                         cTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAAt                                                   <  2:2846846/91‑1 (MQ=255)

                                           gaaatcatattttagcaaaatttatttcgtcgtcccaccccggcaagGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTc                                                 <  2:1343219‑M2/44‑1 (MQ=255)

                                           gAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTc                                                 <  2:2001146/91‑1 (MQ=255)

                                           gAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTc                                                 >  1:2460921/1‑91 (MQ=255)

                                            aaatcatgttttagcaaaatttatttcgtcgtcccaccccggcaagGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCt                                                <  2:3454155‑M2/45‑1 (MQ=255)

                                             aatgatattttcgcaaaatttatttcgtcgtcccaccccagcaagGTTGACT‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTa                                               <  2:2052665‑M2/46‑1 (MQ=255)

                                             aatgatattttcgcaaaatttatttcgtcgtcccaccccagcaagGTTGACT‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTa                                               <  1:2364825‑M2/46‑1 (MQ=255)

                                             aatgatattttcgcaaaatttatttcgtcgtcccaccccagcaagGTTGACT‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTa                                               <  2:1424903‑M2/46‑1 (MQ=255)

                                              atgatattttcgcaaaatttatttcgtcgtcccaccccagcaagGTTGACT‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAg                                              <  2:1949481‑M2/47‑1 (MQ=255)

                                               tgatattttcgtaaaatttatttcgtcgtcccaccccggcaagGTTGACT‑GAA‑CGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGt                                             <  1:3575868‑M2/48‑1 (MQ=255)

                                               tgatattttcgtaaaatttatttcgtcgtcccaccccggcaagGTTGACT‑GAA‑CGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGt                                             <  1:3576447‑M2/48‑1 (MQ=255)

                                               tgatattttcgcaaaatttatttcgtcgtcccaccccagcaagGTTGACT‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGt                                             <  1:1615936‑M2/48‑1 (MQ=255)

                                               tgatattttcgcaaaatttatttcgtcgtcccaccccagcaagGTTGACT‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGt                                             <  2:3788954‑M2/48‑1 (MQ=255)

                                               tgatattttcgcaaaatttatttcgtcgtcccaccccagcaagGTTGACT‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGt                                             <  2:2436375‑M2/48‑1 (MQ=255)

                                               cacTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGt                                             <  1:909454/91‑1 (MQ=255)

                                                gatattttcgtaaaatttatttcgtcgtcccaccccggcaagGTTGACT‑GAA‑CGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTc                                            <  1:3264891‑M2/49‑1 (MQ=255)

                                                gatattttcgcaaaatttatttcgtcgtcccaccccagcaagGTTGACT‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTc                                            <  2:2341882‑M2/49‑1 (MQ=255)

                                                gatattttcgcaaaatttatttcgtcgtcccaccccagcaagGTTGACT‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTc                                            <  2:745865‑M2/49‑1 (MQ=255)

                                                  tattttcgcaaaatttatttcgtcgtcccaccccagcaagGTTGACT‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCaa                                          <  1:546328‑M2/51‑1 (MQ=255)

                                                  tattttcgcaaaatttatttcgtcgtcccaccccagcaagGTTGACT‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCaa                                          <  2:3016607‑M2/51‑1 (MQ=255)

                                                  taataaATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCaa                                          >  1:785689/1‑91 (MQ=255)

                                                  attttcgtaaaatttatttcgtcgtcccaccccggcagtaGTTGACT‑GAA‑CGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCaa                                          <  2:434305‑M2/51‑1 (MQ=255)

                                                   aataaATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCAAc                                         <  1:1119979/91‑1 (MQ=255)

                                                   aataaATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCAAc                                         >  1:574816/1‑91 (MQ=255)

                                                   aataaATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCAAc                                         >  2:2190561/1‑91 (MQ=255)

                                                    ataaATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCAAcc                                        >  2:16998/1‑91 (MQ=255)

                                                    ataaATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCAAcc                                        <  2:3201051/91‑1 (MQ=255)

                                                     tttcgtaaaatttatttcgtcgtcccaccccggcaagGTTGACT‑GAA‑CGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCt                                       <  2:3172866‑M2/54‑1 (MQ=255)

                                                      tagcaaaatttatttcgtcgtcccaccccggcagtaGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCtt                                      <  2:90063‑M2/55‑1 (MQ=255)

                                                       aaTGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTg                                     <  1:877277/91‑1 (MQ=255)

                                                         taaaatttatttcgtcgtcccaccccggcagtaGTTGACT‑GAA‑CGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGcc                                   <  2:2768507‑M2/58‑1 (MQ=255)

                                                         tGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGcc                                   <  2:1621657/91‑1 (MQ=255)

                                                            ccTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCggg                                <  1:900176/91‑1 (MQ=255)

                                                            ccTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCggg                                <  1:2038568/91‑1 (MQ=255)

                                                             cTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCgggg                               >  1:1694200/1‑91 (MQ=255)

                                                                taGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGGGTgg                            >  1:1585948/1‑91 (MQ=255)

                                                                 aGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGGGTggg                           <  2:3362088/91‑1 (MQ=255)

                                                                 aGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGGGTggg                           >  2:81807/1‑91 (MQ=255)

                                                                    ttACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGGGTGGgacg                        >  1:1252562/1‑91 (MQ=255)

                                                                      aCAATATTATATTGGCAGTAGTTGACC‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGGGTGGgacgac                      <  2:625573/91‑1 (MQ=255)

                                                                       cAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGGGTGGGacgacg                     >  1:423909/1‑91 (MQ=255)

                                                                        aaTATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGGGTGGGAcgacga                    >  2:266168/1‑91 (MQ=255)

                                                                            ttatattGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGGGTGGGACGACGaaata                >  1:859201/1‑91 (MQ=255)

                                                                            ttatattGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGGGTGGGACGACGaaata                <  2:2537408/91‑1 (MQ=255)

                                                                            ttatattGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGGGTGGGACGACGaaata                >  1:1509773/1‑91 (MQ=255)

                                                                                 ttGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGGGTGGGACGACGAAATAAAttt           <  1:2468013/91‑1 (MQ=39)

                                                                                 ttGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGGGTGGGACGACGAAATAAAttt           >  2:472581/1‑91 (MQ=40)

                                                                                     cAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGGGTGGGACGACGAAATAAATTTTGCt       >  1:3147475/1‑91 (MQ=255)

                                                                                     cAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGGGTGGGACGACGAAATAAATTTTGCt       <  1:2771466/91‑1 (MQ=255)

                                                                                     cAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGGGTGGGACGACGAAATAAATTTTGCt       >  2:3725601/1‑91 (MQ=255)

                                                                                     cAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTCCAATTCTAGTCAACCTTGCCGGGGTGGGACGACGAAATAAATTTTGCt       <  1:1368507/91‑1 (MQ=255)

                                                                                       gtagtTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGGGTGGGACGACGAAATAAATTTTGCTaa     <  1:164468/91‑1 (MQ=255)

                                                                                        tagtTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGGGTGGGACGACGAAATAAATTTTGCTaaa    <  2:1723041/91‑1 (MQ=255)

                                                                                         agtTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGGGTGGGACGACGAAATAAATTTTGCTaaaa   >  1:1494228/1‑91 (MQ=255)

                                                                                         agtTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGGGTGGGACGACGAAATAAATTTTGCTaaaa   <  1:1882042/91‑1 (MQ=255)

                                                                                         agtTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGGGTGGGACGACGAAATAAATTTTGCTaaaa   >  2:2433087/1‑91 (MQ=255)

                                                                                          gtTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTTTTTTCTTGTCAACCTTGCCGGGGTGGGACGACGAAATAAATTTTGCTAAAat  >  2:461689/1‑91 (MQ=17)

                                                                                          gtTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGGGTGGGACGACGAAATAAATTTTGCTAAAat  <  1:3424035/91‑1 (MQ=255)

TCTTTCTATATGCATATTAGCTATGACTAACGATAAAGAACCTGAAACACTAATAAATGTCCTATAGTTTACAATATTATATTGGCAGTAGTTGACT‑GAA‑TGAAAATACGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGGGTGGGACGACGAAATAAATTTTGCTAAAAT  >  USA300TCH1516_ALE/1873848‑1874028

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.