BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1071475	158 (0.830)	10 (0.060)	7/148	NT	6.1%	coding (54/318 nt)	USA300HOU_RS05290	Pesticidal crystal protein Cry22Aa
*	?	USA300TCH1516_ALE	= 1071489	164 (0.930)	10 (0.060)	7/148	NT	6.1%	coding (40/318 nt)	USA300HOU_RS05290	Pesticidal crystal protein Cry22Aa

Only 100 of 219 total aligned reads displayed.

TCTTAATAACGATATCATTAGCGCCTTTAATTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGATAAGTCATTTCTGAGTTAGCTTTACTATACCTT  >  USA300TCH1516_ALE/1071399‑1071579

tCTTAATAACGATATCATTAGCGCCTTTAATTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGa                                                                                            >  1:3466035/1‑91 (MQ=255)

tCTTAATAACGATATCATTAGCGCCTTTAATTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGa                                                                                            <  1:3535080/91‑1 (MQ=255)

tCTTAATAACGATATCATTAGCGCCTTTAATTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGa                                                                                            >  2:3868171/1‑91 (MQ=255)

 cTTAATAACGATATCATTAGCGCCTTTAATTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAa                                                                                           <  2:2229274‑M2/91‑2 (MQ=255)

  ttAATAACGATATCATTAGCGCCTTTAATTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAaa                                                                                          <  2:73346‑M2/91‑3 (MQ=255)

  ttAATAACGATATCATTAGCGCCTTTAATTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAaa                                                                                          >  1:312559‑M2/1‑89 (MQ=255)

   taataaCGATATCATTAGCGCCTTTAATTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAaac                                                                                         >  1:1363315‑M2/1‑88 (MQ=255)

   taataaCGATATCATTAGCGCCTTTAATTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAaac                                                                                         <  2:17703‑M2/91‑4 (MQ=255)

   taataaCGATATCATTAGCGCCTTTAATTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAaac                                                                                         <  1:2233296‑M2/91‑4 (MQ=255)

    aataaCGATATCATTAGCGCCTTTAATTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAaaca                                                                                        >  2:1730783‑M2/1‑87 (MQ=255)

      taaCGATATCATTAGCGCCTTTAATTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAaacacc                                                                                      <  2:2544965‑M2/91‑7 (MQ=255)

       aaCGATATCATTAGCGCCTTTAATTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCg                                                                                     <  2:495751/91‑1 (MQ=255)

        aCGATATCATTAGCGCCTTTAATTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGa                                                                                    >  1:281254/1‑91 (MQ=255)

         cGATATCATTAGCGCCTTTAATTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAg                                                                                   >  2:3806293/1‑91 (MQ=255)

         cGATATCATTAGCGCCTTTAATTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAg                                                                                   >  1:233259/1‑91 (MQ=255)

          gATATCATTAGCGCCTTTAATTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAgg                                                                                  <  2:2462516/91‑1 (MQ=255)

            tatCATTAGCGCCTTTAATTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGc                                                                                <  2:2556567/91‑1 (MQ=255)

              tCATTAGCGCCTTTAATTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTg                                                                              <  1:1447986/91‑1 (MQ=255)

                aTTAGCGCCTTTAATTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGAt                                                                            <  1:1268985/91‑1 (MQ=255)

                aTTAGCGCCTTTAATTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGAt                                                                            >  1:2444151/1‑91 (MQ=255)

                aTTAGCGCCTTTAATTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGAt                                                                            >  1:845941/1‑91 (MQ=255)

                aTTAGCGCCTTTAATTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGAt                                                                            <  1:1267902/91‑1 (MQ=255)

                    gcgcCTTTAATTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATg                                                                        <  1:994468/91‑1 (MQ=255)

                    gcgcCTTTAATTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATg                                                                        <  1:3405415/91‑1 (MQ=255)

                     cgcCTTTAATTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGa                                                                       >  2:352948/1‑91 (MQ=255)

                      gcCTTTAATTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGAc                                                                      <  2:684193/91‑1 (MQ=255)

                      gcCTTTAATTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGAc                                                                      <  2:845941/91‑1 (MQ=255)

                      gcCTTTAATTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGAc                                                                      >  1:2893674/1‑91 (MQ=255)

                         tttAATTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGt                                                                   <  2:1301322/91‑1 (MQ=255)

                          ttAATTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTa                                                                  <  1:1152732/91‑1 (MQ=255)

                          ttAATTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTa                                                                  <  2:2613837/91‑1 (MQ=255)

                           tAATTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTaa                                                                 <  1:27032/91‑1 (MQ=255)

                            aaTTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAAt                                                                <  2:3315895/91‑1 (MQ=255)

                              tttGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAg                                                              <  2:1229255/91‑1 (MQ=255)

                              tttGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAg                                                              <  1:524162/91‑1 (MQ=255)

                               ttGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGt                                                             >  2:3464752/1‑91 (MQ=255)

                               ttGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGt                                                             >  2:1425978/1‑91 (MQ=255)

                                tgtgGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGtt                                                            >  1:328426/1‑91 (MQ=255)

                                tgtgGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGtt                                                            <  1:1631798/91‑1 (MQ=255)

                                tgtgGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAAGAGtt                                                            >  1:3229292/1‑91 (MQ=255)

                                  tggtgTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTa                                                          >  1:3666118/1‑91 (MQ=255)

                                     tgtAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTAtta                                                       >  2:3848007/1‑90 (MQ=255)

                                     tgtAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTc                                                       <  1:2039358/91‑1 (MQ=255)

                                      gtagtaTTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCa                                                      <  2:1313150/91‑1 (MQ=255)

                                      gtagtaTTCGTCGTTGCATCTGCATTTAAATATGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTACTAGTTTATTCa                                                      >  2:2967657/1‑91 (MQ=255)

                                         gtaTTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATaa                                                   >  1:2612779/1‑91 (MQ=255)

                                         gtaTTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATaa                                                   <  1:1702413/91‑1 (MQ=255)

                                           aTTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATg                                                 >  2:2925557/1‑91 (MQ=255)

                                            ttcatcgtTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGt                                                <  2:2010832/87‑1 (MQ=255)

                                            ttCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGt                                                <  2:1568490/91‑1 (MQ=255)

                                            ttCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGt                                                <  2:2534095/91‑1 (MQ=255)

                                             tcgtcgTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTa                                               <  1:604426/91‑1 (MQ=255)

                                             tcgtcgTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTa                                               >  1:1055684/1‑91 (MQ=255)

                                              cgtcgtTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTaa                                              >  1:397670/1‑91 (MQ=255)

                                                 cgtTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCt                                           <  1:3195335/91‑1 (MQ=255)

                                                   ttGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTcc                                         >  2:1053465/1‑91 (MQ=255)

                                                   ttGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTcc                                         >  2:108875/1‑91 (MQ=255)

                                                   ttGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTcc                                         >  1:671030/1‑91 (MQ=255)

                                                       aTCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAAt                                     >  2:3715245/1‑91 (MQ=255)

                                                        tCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATg                                    >  1:389848/1‑91 (MQ=255)

                                                         cTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGa                                   <  1:1004589/91‑1 (MQ=255)

                                                           gCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGATa                                 >  1:2337814/1‑91 (MQ=255)

                                                           gCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGATa                                 <  2:1861013/91‑1 (MQ=255)

                                                            cATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGATaa                                <  2:657836/91‑1 (MQ=255)

                                                            cATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGATaa                                >  1:417855/1‑91 (MQ=255)

                                                             aTTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGATAAg                               >  1:82569/1‑91 (MQ=255)

                                                              tttAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATg                                    >  1:960097/1‑85 (MQ=255)

                                                               ttAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCt                                                                               <  2:1812969/41‑1 (MQ=255)

                                                               ttAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGATAAGTc                             >  2:3154903/1‑91 (MQ=255)

                                                                 aaaTTTGGTGTTACTAGTGTAGCAGAaacaccaaatttaaatgcagatgcaacgacgaatactacaccacaaattaaaggcgctaatgata                           <  1:2277806‑M2/91‑66 (MQ=255)

                                                                  aaTTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGATAAGTCAtt                          <  2:509415/91‑1 (MQ=255)

                                                                    tttGGTGTTACTAGTGTAGCAGAaacaccaaatttaaatgcagatgcaacgacgaatactacaccacaaattaaaggcgctaatgatatcg                        <  2:1296738‑M2/91‑69 (MQ=255)

                                                                    tttGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGATAAGTCATTTc                        <  2:2358893/91‑1 (MQ=255)

                                                                    tttGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGATAAGTCATTTc                        >  2:434806/1‑91 (MQ=255)

                                                                    tttGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGATAAGTCATTTc                        <  2:2829493/91‑1 (MQ=255)

                                                                      tGGTGTTACTAGTGTAGCAGAaacaccaaatttaaatgcagatgcaacgacgaatactacaccacaaattaaaggcgctaatgatatcgtt                      <  2:799171‑M2/91‑71 (MQ=255)

                                                                       ggTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGATAAGTCATTTCTGa                     >  1:2981085/1‑91 (MQ=255)

                                                                       ggTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGATAAGTCATTTCTGa                     <  1:1580209/91‑1 (MQ=255)

                                                                        gtgtTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGATAAGTCATTTCTGAg                    >  1:3346348/1‑91 (MQ=255)

                                                                        gtgtTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGATAAGTCATTTCTGAg                    <  1:1160552/91‑1 (MQ=255)

                                                                        gtgtTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGATAAGTCATTTCTGAg                    <  2:281254/91‑1 (MQ=255)

                                                                        gtgtTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGATAAGTCATTTCTGAg                    <  1:2544965/91‑1 (MQ=255)

                                                                        gtgtTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGATAAGTCATTTCTGAg                    <  1:2886185/91‑1 (MQ=255)

                                                                         tgtTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGATAAGTCATTTCTGAGt                   <  1:2120701/91‑1 (MQ=255)

                                                                          gtTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGATAAGTCATTTCTGAg                    <  1:1850418/89‑1 (MQ=255)

                                                                          gtTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGATAAGTCATTTCTGAGtt                  >  1:1385016/1‑91 (MQ=255)

                                                                          gtTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGATAAGTCATTTCTGAGtt                  <  2:689949/91‑1 (MQ=255)

                                                                           ttACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGATAAGTCATTTCTGAGTTa                 >  1:1793673/1‑91 (MQ=255)

                                                                           ttACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGATAAGTCATTTCTGAGTTa                 >  2:605533/1‑91 (MQ=255)

                                                                            tACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGATAAGTCATTTCTGAGTTAg                <  1:1984715/91‑1 (MQ=255)

                                                                             aCTAGTGTAGCAGAaacaccaaatttaaatgcagatgcaacgacgaatactacaccacaaattaaaggcgctaatgatatcgttattaaga               <  2:3841801‑M2/91‑78 (MQ=255)

                                                                              cTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGATAAGTCATTTCTGAGTTAGCt              <  2:1173199/91‑1 (MQ=255)

                                                                                aGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGATAAGTCATTTCTGAGTTAGCttt            >  2:2289740/1‑91 (MQ=255)

                                                                                   gtAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGATAAGTCATTTCTGAGTTAGCTTTACt         >  1:2662701/1‑91 (MQ=255)

                                                                                      gCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGATAAGTCATTTCTGAGTTAGCTTTACtata      >  2:3775524/1‑91 (MQ=255)

                                                                                      gCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGATAAGTCATTTCTGAGTTAGCTTTACtata      >  1:3838762/1‑91 (MQ=255)

                                                                                        aGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGATAAGTCATTTCTGAGTTAGCTTTACTATAcc    <  2:381421/91‑1 (MQ=255)

                                                                                          aaaCACCGAGGGCTGATAATGACTGTAATAGTTTATTCATCATGTAACCTCCGAATGATAAGTCATTTCTGAGTTAGCTTTACTATACCtt  >  2:2074598/1‑91 (MQ=255)

                                                                                          aaaCACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGATAAGTCATTTCTGAGTTAGCTTTACTATACCtt  >  1:2128627/1‑91 (MQ=255)

                                                                                          aaaCACCGAGGGCTGATAAAGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGATAAGTCATTTCTGAGTTAGCTTTACTATACCtt  >  2:3389971/1‑91 (MQ=255)

TCTTAATAACGATATCATTAGCGCCTTTAATTTGTGGTGTAGTATTCGTCGTTGCATCTGCATTTAAATTTGGTGTTACTAGTGTAGCAGAAACACCGAGGGCTGATAATGACTGTAATAGTTTATTCATAATGTAACCTCCGAATGATAAGTCATTTCTGAGTTAGCTTTACTATACCTT  >  USA300TCH1516_ALE/1071399‑1071579

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.