BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1086971	157 (0.820)	23 (0.140)	12/140	NT	13.3%	coding (122/1401 nt)	ykoD_1	Putative HMP/thiamine import ATP‑binding protein YkoD
*	?	USA300TCH1516_ALE	= 1086989	162 (0.970)	23 (0.140)	12/140	NT	13.3%	coding (104/1401 nt)	ykoD_1	Putative HMP/thiamine import ATP‑binding protein YkoD

Only 100 of 248 total aligned reads displayed.

TCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCAC  >  USA300TCH1516_ALE/1086899‑1087079

  atcatATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAgt                                                                                          <  1:749338‑M2/91‑3 (MQ=255)

   tcatATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAgta                                                                                         <  1:197218‑M2/91‑4 (MQ=255)

      tatTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAgtaaaa                                                                                      >  2:1519604‑M2/1‑85 (MQ=255)

       atTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGCgtcaaag                                                                                     <  2:624526‑M2/91‑8 (MQ=255)

       atTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAgtaaaag                                                                                     <  1:85832‑M2/91‑8 (MQ=255)

       atTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAgtaaaag                                                                                     <  1:1213813‑M2/91‑8 (MQ=255)

       atTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAgtaaaag                                                                                     >  1:2453301‑M2/1‑84 (MQ=255)

       atTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAgtaaaag                                                                                     >  2:2235217‑M2/1‑84 (MQ=255)

       atTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAgtaaaag                                                                                     >  1:510003‑M2/1‑84 (MQ=255)

        tttCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAgtaaaagt                                                                                    >  2:1938347‑M2/1‑83 (MQ=255)

         ttCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAgtaaaagta                                                                                   >  2:35983‑M2/1‑82 (MQ=255)

         ttCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAgtaaaagta                                                                                   >  2:3536015‑M2/1‑82 (MQ=255)

          tCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAgtaaaagtac                                                                                  <  1:3840782‑M2/91‑11 (MQ=255)

          tCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAgtaaaagtac                                                                                  <  2:1408709‑M2/91‑11 (MQ=255)

          tCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAgtaaaagtac                                                                                  <  1:1730879‑M2/91‑11 (MQ=255)

          tCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAgtaaaagtac                                                                                  >  2:738994‑M2/1‑81 (MQ=255)

            aTAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACtt                                                                                <  1:213013/91‑1 (MQ=255)

              aGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACtttt                                                                              >  2:343837/1‑91 (MQ=255)

              aGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACtttt                                                                              >  2:7956/1‑91 (MQ=255)

              aGGTAATTCAATTAAATCAGGAACAATACCACGTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACtttt                                                                              <  1:3318874/91‑1 (MQ=255)

               ggTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACttttt                                                                             <  2:1324939/91‑1 (MQ=255)

                ctaatttaattGAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTc                                                                            >  1:1272802/2‑91 (MQ=255)

                 tAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCt                                                                           <  1:2549175/91‑1 (MQ=255)

                 tAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCt                                                                           <  2:1766173/91‑1 (MQ=255)

                  aaTTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCtt                                                                          >  1:993500/1‑91 (MQ=255)

                  aaTTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCtt                                                                          <  2:1606971/91‑1 (MQ=255)

                     tCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGt                                                                       >  1:2474826/1‑91 (MQ=255)

                       aattaaattaGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCt                                                                     >  1:1158925/1‑91 (MQ=255)

                       aattaaattaGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCt                                                                     >  2:286843/1‑91 (MQ=255)

                        attaaattaGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCtt                                                                    <  1:1335384/91‑1 (MQ=255)

                         ttaaattaGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTCTCTTTGTCTTg                                                                   >  2:2969286/1‑91 (MQ=255)

                            aattaGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAAt                                                                <  2:825315/91‑1 (MQ=255)

                            aattaGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAAt                                                                >  1:2323401/1‑91 (MQ=255)

                             attaGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATa                                                               <  2:2248757/91‑1 (MQ=255)

                             attaGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATa                                                               >  2:3851959/1‑91 (MQ=255)

                             attaGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATa                                                               >  1:1080841/1‑91 (MQ=255)

                               taGGAACAATAGCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGt                                                             <  1:3511068/91‑1 (MQ=255)

                               taGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAgtaaaagtacacttctgaatgtattaagtgg                                                             <  1:1093326‑M2/91‑32 (MQ=255)

                               taGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGt                                                             <  2:3655895/91‑1 (MQ=255)

                                aGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTg                                                            <  1:1597377/91‑1 (MQ=255)

                                 ggAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGa                                                           >  1:3776262/1‑91 (MQ=255)

                                 ggAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGa                                                           >  1:1832986/1‑91 (MQ=255)

                                 ggAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGa                                                           <  2:2462617/91‑1 (MQ=255)

                                     cAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATAtt                                                       <  1:1771868/91‑1 (MQ=255)

                                       aTACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAgtaaaagtacacttctgaatgtcttaagtggtattgttc                                                     <  2:3708737‑M2/91‑40 (MQ=255)

                                        tACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTaa                                                    >  2:3817439/1‑91 (MQ=255)

                                        tACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTaa                                                    >  1:3100130/1‑91 (MQ=255)

                                        aaCCACTTAATACAGTCAGAAGTGTACTTTTACCGCAACCAGAGGGACCGTGTAGAAGTACTTTTTCTTTGTCTTGAATAGTGGTATTTaa                                                    <  2:3608558/90‑1 (MQ=255)

                                          ccACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAAt                                                  >  2:3223233/1‑91 (MQ=255)

                                            aCTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGa                                                >  1:3589674/1‑91 (MQ=255)

                                                aaTACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGa                                            <  2:554899/91‑1 (MQ=255)

                                                 aTACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGaa                                           >  2:2636463/1‑91 (MQ=255)

                                                     aTTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAAtt                                       >  2:1708846/1‑91 (MQ=255)

                                                       tCAGAAGTGTACTTTTACCGCAACGAGAAGGACGGAGTAAAAGTACTTTTTCTTTGTCATGAATAGTGATATTTAAATGATCGAAAAtttt                                     >  2:3715801/1‑91 (MQ=255)

                                                       tCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAgtaaaagtacacttctgaatgtattaagtggtattgttcctaatttaattgaatt                                     <  2:395856‑M2/91‑56 (MQ=255)

                                                          gAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACg                                  <  1:313805/91‑1 (MQ=255)

                                                            aGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTCTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGtt                                <  1:545460/91‑1 (MQ=255)

                                                              tgtACTTTTACCGCAACCAGAAGGACCGAgtaaaagtacacttctgaatgtattaagtggtattgttcctaatttaattgaattacctatg                              <  2:1488994‑M2/91‑63 (MQ=255)

                                                              tgtACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGa                              >  1:2809630/1‑91 (MQ=255)

                                                                tACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGAcc                            <  2:1845930/91‑1 (MQ=255)

                                                                 aCTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCa                           >  2:1109711/1‑91 (MQ=255)

                                                                  cTTTTACCGCAACCAGAAGGACCGAgtaaaagtacacttctgaatgtattaagtggtattgttcctaatttaattgaattacctatgaaat                          <  1:710926‑M2/91‑67 (MQ=255)

                                                                  cTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCAc                          >  1:2965652/1‑91 (MQ=255)

                                                                    tttACCGCAACCAGAAGGACCGAgtaaaagtacacttctgaatgtattaagtggtattgttcctaatttaattgaattacctatgaaatat                        <  1:857734‑M2/91‑69 (MQ=255)

                                                                    tttACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTTTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACtt                        >  2:1484808/1‑91 (MQ=255)

                                                                    tttACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACtt                        >  2:365031/1‑91 (MQ=255)

                                                                     ttACCGCAACCAGAAGGACCGAgtaaaagtacacttctgaatgtattaagtggtattgttcctaatttaattgaattacctatgaaatatg                       <  1:1008578‑M2/91‑70 (MQ=255)

                                                                     ttACCGCAACCAGAAGGACCGAGTACAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTg                       <  1:3622548/91‑1 (MQ=255)

                                                                      tACCGCAACCAGAAGGACCGAgtaaaagtacacttctgaatgtattaagtggtattgttcctaatttaattgaattacctatgaaatatga                      <  2:1514947‑M2/91‑71 (MQ=255)

                                                                      tACCGCAACCAGAAGGACCGAgtaaaagtacacttctgaatgtattaagtggtattgttcctaatttaattgaattacctatgaaatatga                      <  1:1755412‑M2/91‑71 (MQ=255)

                                                                      tACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTgg                      >  1:47130/1‑91 (MQ=255)

                                                                      tACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTgg                      <  2:2487598/91‑1 (MQ=255)

                                                                      tACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTgg                      >  1:652286/1‑91 (MQ=255)

                                                                       aCCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGa                     >  2:2395137/1‑91 (MQ=255)

                                                                         cGCAACCAGGAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGata                   <  1:2170906/91‑1 (MQ=255)

                                                                         cGCAACCAGAAGGACCGAgtaaaagtacacttctgaatgtattaagtggtattgttcctaatttaattgaattacctatgaaatatgatga                   <  2:3534499‑M2/91‑74 (MQ=255)

                                                                          gCAACCAGAAGGACCGAgtaaaagtacacttctgaatgtattaagtggtattgttcctaatttaattgaattacctatgaaatatgatgaa                  <  1:2918510‑M2/91‑75 (MQ=255)

                                                                           cAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGCTATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATAtt                 >  1:2784195/1‑91 (MQ=255)

                                                                           cAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATAtt                 >  1:3852310/1‑91 (MQ=255)

                                                                            aaCCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATAttt                >  2:409706/1‑91 (MQ=255)

                                                                             aCCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATAtttt               <  2:856899/91‑1 (MQ=255)

                                                                              ccAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTa              <  2:3118266/91‑1 (MQ=255)

                                                                                aGAAGGACCGAgtaaaagtacacttctgaatgtattaagtggtattgttcctaatttaattgaattacctatgaaatatgatgaactaatc            <  1:2265872‑M2/91‑81 (MQ=255)

                                                                                 gAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATc           >  1:204507/1‑91 (MQ=255)

                                                                                 gAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATc           <  1:1531423/91‑1 (MQ=255)

                                                                                  aaGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGACAATTTTACGTTGACCACTTGGATATTTTAATCg          >  1:3179190/1‑91 (MQ=255)

                                                                                  aaGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCg          >  2:1664637/1‑91 (MQ=255)

                                                                                   aGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGt         >  1:3348427/1‑91 (MQ=255)

                                                                                   aGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGt         >  1:2237280/1‑91 (MQ=255)

                                                                                    ggACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTa        >  1:3448963/1‑91 (MQ=255)

                                                                                    ggACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTa        >  1:1915127/1‑91 (MQ=255)

                                                                                     gACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTaa       <  2:3125070/91‑1 (MQ=255)

                                                                                      aCCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTaaa      <  2:3776481/91‑1 (MQ=255)

                                                                                      aCCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGCATATTTTAATCGTaaa      >  2:3707283/1‑91 (MQ=255)

                                                                                       ccGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAAt     <  1:3465089/91‑1 (MQ=255)

                                                                                        cGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATc    <  2:2936800/91‑1 (MQ=255)

                                                                                         gAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCa   >  2:2733391/1‑91 (MQ=255)

                                                                                         gAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCa   <  2:3504038/91‑1 (MQ=255)

                                                                                          aGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCac  >  2:1047598/1‑91 (MQ=255)

                                                                                          aGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCac  >  1:1907694/1‑91 (MQ=255)

TCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCAC  >  USA300TCH1516_ALE/1086899‑1087079

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.