BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1138356	191 (1.000)	18 (0.110)	15/140	NT	9.2%	intergenic (‑121/+82)	isdB/isdA	Iron‑regulated surface determinant protein B/Iron‑regulated surface determinant protein A
*	?	USA300TCH1516_ALE	= 1138378	190 (1.140)	18 (0.110)	15/140	NT	9.2%	intergenic (‑143/+60)	isdB/isdA	Iron‑regulated surface determinant protein B/Iron‑regulated surface determinant protein A

Only 100 of 264 total aligned reads displayed.

TGATTACTTGTATTGTACATTGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGATTCTTTTCTTTTGAAAAGTAAT  >  USA300TCH1516_ALE/1138288‑1138468

tGATTACTTGTATTGTACATTGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATg                                                                                            >  1:60627/1‑91 (MQ=255)

  aTTACTTGTATTGTACATTGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGac                                                                                          <  1:1135963‑M2/91‑3 (MQ=255)

   ttACTTGTATTGTACATTGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGaca                                                                                         >  1:53584‑M2/1‑88 (MQ=255)

    tACTTGTATTGTACATTGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGacat                                                                                        <  1:1732823‑M2/91‑5 (MQ=255)

     aCTTGTATTGTACATTGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGacata                                                                                       <  1:3686363‑M2/91‑6 (MQ=255)

       ttgtattgtaCATTGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGacatagg                                                                                     <  2:2356583‑M2/91‑8 (MQ=255)

       ttgtattgtaCATTGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGacatagg                                                                                     <  2:1136944‑M2/91‑8 (MQ=255)

       ttgtattgtaCATTGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGacatagg                                                                                     >  1:1960935‑M2/1‑84 (MQ=255)

          tattgtaCATTGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGacataggtta                                                                                  <  1:1144536‑M2/91‑11 (MQ=255)

             tgtaCGTTGAAATGTTAGTTAATTGGAACGTTATTTTATGAAAAAATAACCTACGTTATAGATTATGAAATA‑TCTATGACATAGGTtaaat                                                                               <  1:3603129/91‑1 (MQ=255)

             tgtaCATTGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAGAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTtaaat                                                                               <  2:3476050/91‑1 (MQ=255)

             tgtaCATTGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTtaaat                                                                               <  2:3475824/91‑1 (MQ=255)

               taCATTGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTtaaataa                                                                             <  2:2576442/91‑1 (MQ=255)

                aCATTGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTtaaataaa                                                                            >  2:3408532/1‑91 (MQ=255)

                aCATTGAAATGTTAGTTAATTGCAACGTTAAATAATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTtaaataaa                                                                            <  2:1789/91‑1 (MQ=255)

                  aTTGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAAt                                                                          >  1:2593412/1‑91 (MQ=255)

                  aTTGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAAt                                                                          >  1:3763381/1‑91 (MQ=255)

                   ttGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAAtt                                                                         <  2:3067587/91‑1 (MQ=255)

                     gAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTCATATAT‑ATGTCATAATCTATAacataggttatttttttataa                                                                       >  2:756604‑M2/1‑70 (MQ=255)

                       aaTGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTtaaa                                                                     <  1:1834933/91‑1 (MQ=255)

                       aaTGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTtaaa                                                                     >  2:1482639/1‑91 (MQ=255)

                       aaTGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTtaaa                                                                     >  2:1143122/1‑91 (MQ=255)

                       aaTGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTtaaa                                                                     >  2:2800880/1‑91 (MQ=255)

                       aaTGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTtaaa                                                                     <  1:512684/91‑1 (MQ=255)

                        aTGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTtaaaa                                                                    >  1:66732/1‑91 (MQ=255)

                           ttagttaATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTtaaaataa                                                                 >  2:2252395/1‑91 (MQ=255)

                           ttagttaATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTtaaaataa                                                                 >  2:2582494/1‑91 (MQ=255)

                            tagttaATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTtaaaataaa                                                                >  1:1105773/1‑91 (MQ=255)

                             agttaATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTtaaaataaaa                                                               <  1:155977/91‑1 (MQ=255)

                              gttaATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATaaaaa                                                              >  2:1095932/1‑91 (MQ=255)

                               ttaATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATaaaaaa                                                             <  1:1403422/91‑1 (MQ=255)

                               ttaATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATaaaaaa                                                             >  2:2624006/1‑91 (MQ=255)

                                 aaTTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAata                                                           >  1:844364/1‑91 (MQ=255)

                                 aaTTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAata                                                           <  2:160629/91‑1 (MQ=255)

                                  aTTGCAACGTTATTTTAT‑AAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAatata                                                         >  2:2312469/1‑91 (MQ=255)

                                    tGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAatatat                                                        >  1:34873/1‑91 (MQ=255)

                                    tGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAatatat                                                        >  1:2081201/1‑91 (MQ=255)

                                     gCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATAtt                                                       <  2:66879/91‑1 (MQ=255)

                                     gCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATAtt                                                       <  1:1691896/91‑1 (MQ=255)

                                      cAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTa                                                      >  1:1255278/1‑91 (MQ=255)

                                       taggTTATTTTTTTATAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTaa                                                     >  1:64843/4‑91 (MQ=38)

                                       taggTTATTTTTTTATAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTaa                                                     >  1:2874985/4‑91 (MQ=38)

                                        aCGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAg                                                    >  2:846228/1‑91 (MQ=255)

                                        aCGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAg                                                    >  1:2379939/1‑91 (MQ=255)

                                         ggTTATTTTTTTATAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGt                                                   >  2:1724779/2‑91 (MQ=255)

                                          gTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATCTTAAGtt                                                  >  1:1940398/1‑91 (MQ=255)

                                           ttATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTa                                                 >  1:650696/1‑91 (MQ=255)

                                           ttATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTa                                                 <  2:2746846/91‑1 (MQ=255)

                                            tATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTAt                                                <  1:707530/91‑1 (MQ=255)

                                              ttttATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAACTAAAATTTAAAATAAAAAATATATTAAGTTATGa                                              >  2:243340/1‑91 (MQ=255)

                                              ttttATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGa                                              <  1:384677/91‑1 (MQ=255)

                                               tttATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAg                                             <  2:624760/91‑1 (MQ=255)

                                               tttATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAg                                             >  1:1474018/1‑91 (MQ=255)

                                                ttATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAgt                                            >  1:2189935/1‑91 (MQ=255)

                                                 tataAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAgtg                                           <  1:2492129/91‑1 (MQ=255)

                                                  ataAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGacataggttatttttttataaaataacgttgcaattaactaacatttcaa                                          <  2:522441‑M2/91‑51 (MQ=255)

                                                  ataAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGacataggttatttttttataaaataacgttgcaattaactaacatttcaa                                          <  1:1390196‑M2/91‑51 (MQ=255)

                                                  ataAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAgtgt                                          >  1:1777156/1‑91 (MQ=255)

                                                   taAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGtgtg                                         >  2:3819761/1‑91 (MQ=255)

                                                    aaaaaaaTAACCTATGTTATAGATTATGAAATA‑TCTATGacataggttatttttttataaaataacgttgcaattaactaacatttcaatg                                        <  2:701834‑M2/91‑53 (MQ=255)

                                                      aaaaaTAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACg                                      >  2:185676/1‑91 (MQ=255)

                                                       aaaaTAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACga                                     >  1:3335504/1‑91 (MQ=255)

                                                         aaTAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACgatg                                   >  1:3792993/1‑91 (MQ=255)

                                                           tAACCTATGTTATGGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACgatgat                                 <  2:1420912/91‑1 (MQ=255)

                                                           tAACCTATGTTATAGATTATGAAATA‑TCTATGacataggttatttttttataaaataacgttgcaattaactaacatttcaatgtacaata                                 <  2:3269617‑M2/91‑60 (MQ=255)

                                                            aaCCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGatt                                <  1:1745987/91‑1 (MQ=255)

                                                            aaCCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGatt                                >  2:1283052/1‑91 (MQ=255)

                                                              ccTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGattta                              >  2:2129449/1‑91 (MQ=255)

                                                               cTATGTTATAGATTATGAAATA‑TCTATGacataggttatttttttataaaataacgttgcaattaactaacatttcaatgtacaatacaag                             <  2:634530‑M2/91‑64 (MQ=255)

                                                               cTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGatttat                             >  1:2771049/1‑91 (MQ=255)

                                                               cTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAA‑ATATTAAGTTATGAGTGTGACGATGatttatt                            <  2:552669/91‑1 (MQ=255)

                                                                   gTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAg                         <  2:2076316/91‑1 (MQ=255)

                                                                    ttATAGATTATGAAATA‑TCTACGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGa                        <  1:3663475/91‑1 (MQ=255)

                                                                     tataGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGAt                       <  1:3204569/91‑1 (MQ=255)

                                                                      ataGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGAtt                      <  1:1028120/91‑1 (MQ=255)

                                                                      ataGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGAtt                      >  2:2346575/1‑91 (MQ=255)

                                                                      ataGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGAtt                      <  2:2873565/91‑1 (MQ=255)

                                                                      ataGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGAtt                      <  2:3715003/91‑1 (MQ=255)

                                                                       taGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGAttc                     <  2:1055892/91‑1 (MQ=255)

                                                                       taGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGAttc                     >  1:3017586/1‑91 (MQ=255)

                                                                        aGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGAttct                    >  1:1318018/1‑91 (MQ=255)

                                                                         gATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGAttctt                   <  2:1255278/91‑1 (MQ=255)

                                                                         gATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGAttctt                   >  2:2461103/1‑91 (MQ=255)

                                                                          aTTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGAttcttt                  <  2:3116609/91‑1 (MQ=255)

                                                                            tATGAAATA‑TCTATGACATAGGTTTAATAAAATTTAAAATAAATAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGAttcttttc                <  2:3604775/91‑1 (MQ=255)

                                                                             aTGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGAttcttttct               >  2:946471/1‑91 (MQ=255)

                                                                              tGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGAttcttttctt              >  1:118120/1‑91 (MQ=255)

                                                                              tGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGAttcttttctt              <  2:2480879/91‑1 (MQ=255)

                                                                              tGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGAttcttttctt              >  1:2012860/1‑91 (MQ=255)

                                                                              tGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGAttcttttctt              >  1:774943/1‑91 (MQ=255)

                                                                               gAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACgat                                    >  1:2253930/1‑68 (MQ=255)

                                                                                 aaTA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGATTCTTTTCTTTTg           <  2:1894950/91‑1 (MQ=255)

                                                                                  ata‑tCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGATTCTTTTCTTTTGa          >  2:366958/1‑91 (MQ=255)

                                                                                         aTGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGATTCTTTTCTTTTGAAAAGta    <  1:3570444/91‑1 (MQ=255)

                                                                                          tGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGATTCTTTTCTTTTGAAAAGtaa   <  2:3203441/91‑1 (MQ=255)

                                                                                          tGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGATTCTTTTCTTTTGAAAAGtaa   <  2:2257576/91‑1 (MQ=255)

                                                                                          tGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGATTCTTTTCTTTTGAAAAGtaa   >  1:782875/1‑91 (MQ=255)

                                                                                           gACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGATTCTTTTCTTTTGAAAAGtaat  >  2:3788846/1‑91 (MQ=255)

                                                                                           gACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGATTCTTTTCTTTTGAAAAGtaat  <  2:2383102/91‑1 (MQ=255)

                                                                                           gACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGATTCTTTTCTTTTGAAAAGtaat  <  2:828589/91‑1 (MQ=255)

TGATTACTTGTATTGTACATTGAAATGTTAGTTAATTGCAACGTTATTTTATAAAAAAATAACCTATGTTATAGATTATGAAATA‑TCTATGACATAGGTTAAATAAAATTTAAAATAAAAAATATATTAAGTTATGAGTGTGACGATGATTTATTTAGATTCTTTTCTTTTGAAAAGTAAT  >  USA300TCH1516_ALE/1138288‑1138468

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.