BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1199293	128 (0.670)	14 (0.080)	9/144	NT	9.7%	intergenic (+20/‑63)	USA300HOU_RS05980/USA300HOU_RS05985	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 1199312	147 (0.860)	14 (0.080)	9/144	NT	9.7%	intergenic (+39/‑44)	USA300HOU_RS05980/USA300HOU_RS05985	hypothetical protein/hypothetical protein

Only 100 of 219 total aligned reads displayed.

CAAAAAGGGTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATAGATATTTA  >  USA300TCH1516_ALE/1199223‑1199402

cAAAAAGGGTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAg                                                                                           <  2:3283108‑M2/91‑2 (MQ=255)

cAAAAAGGGTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAg                                                                                           <  2:3396040‑M2/91‑2 (MQ=255)

 aaaaaGGGTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgc                                                                                          >  1:2142857‑M2/1‑89 (MQ=255)

 aaaaaGGGTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAAGAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgc                                                                                          >  2:143514‑M2/1‑89 (MQ=255)

   aaaGGGTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGACAAGGGTACATGATACTTTATcca                                                                                        >  2:1764782/1‑90 (MQ=255)

   aaaGGGTTACTCCAAATCTTTAATCGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgcct                                                                                        >  2:3600433‑M2/1‑87 (MQ=255)

    aaGGGTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgcctc                                                                                       >  1:1131162‑M2/1‑86 (MQ=255)

    aaGGGTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgcctc                                                                                       <  2:2528985‑M2/91‑6 (MQ=255)

    aaGGGTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgcctc                                                                                       >  1:195562‑M2/1‑86 (MQ=255)

      gggTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgcctcgt                                                                                     >  1:2068587‑M2/1‑84 (MQ=255)

       ggTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgcctcgtt                                                                                    <  2:3095520‑M2/91‑9 (MQ=255)

       ggTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgcctcgtt                                                                                    >  2:442910‑M2/1‑83 (MQ=255)

       ggTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgcctcgtt                                                                                    <  2:483461‑M2/91‑9 (MQ=255)

       ggTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgcctcgtt                                                                                    <  2:732501‑M2/91‑9 (MQ=255)

       ggTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgcctcgtt                                                                                    <  2:2038233‑M2/91‑9 (MQ=255)

       ggTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgcctcgtt                                                                                    <  2:844701‑M2/91‑9 (MQ=255)

       ggTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTCAgcctcgtt                                                                                    <  1:3716044‑M2/91‑9 (MQ=255)

        gTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGttt                                                                                   >  2:3519672/1‑91 (MQ=255)

         ttACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGtttt                                                                                  >  2:1319427/1‑91 (MQ=255)

         ttACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGtttt                                                                                  >  2:157155/1‑91 (MQ=255)

         ttACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGtttt                                                                                  >  1:2656285/1‑91 (MQ=255)

          tACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGttttt                                                                                 >  2:752587/1‑91 (MQ=255)

          tACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGtttta                                                                                 >  2:3838443/1‑90 (MQ=255)

           aCTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTg                                                                                >  2:2607027/1‑91 (MQ=255)

               cAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGatat                                                                            <  1:2323921/91‑1 (MQ=255)

                 aaTCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGc                                                                          <  1:3409223/91‑1 (MQ=255)

                   tCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCAt                                                                        <  2:3646363/91‑1 (MQ=255)

                      ttAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCAtttt                                                                     <  1:2296111/91‑1 (MQ=255)

                        aaTTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTc                                                                   >  1:504099/1‑91 (MQ=255)

                              aTTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAata                                                             >  2:3312473/1‑91 (MQ=255)

                               ttttAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgcctcgttatgtcgcttaatttattgtaattg                                                            <  2:1374670‑M2/91‑33 (MQ=255)

                               ttttAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAatat                                                            <  2:33614/91‑1 (MQ=255)

                               ttttAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAatat                                                            <  1:3020431/91‑1 (MQ=255)

                                 ttAATTCAATTACAATAAATTAAGCGACATAACGAGGCAATGGTACATGATACTTTAGCCTCGTTTTTGATATGCAGTTTTCTGAATATaa                                                          <  1:2586299/91‑1 (MQ=255)

                                 ttAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATaa                                                          >  2:2406061/1‑91 (MQ=255)

                                   aaTTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAgg                                                        >  1:964458/1‑91 (MQ=255)

                                   aaTTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAgg                                                        >  1:827243/1‑91 (MQ=255)

                                   aaTTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAgg                                                        <  2:2140196/91‑1 (MQ=255)

                                     ttCAATTGCAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGc                                                      <  1:1931280/91‑1 (MQ=255)

                                      tCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCa                                                     >  2:377976/1‑91 (MQ=255)

                                      tCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCCGAATATAAGGGCa                                                     >  1:3876512/1‑91 (MQ=255)

                                         aTTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATa                                                  >  1:2432530/1‑91 (MQ=255)

                                           tACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGa                                                <  2:1251791/91‑1 (MQ=255)

                                            aCAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGAt                                               >  2:603331/1‑91 (MQ=255)

                                             cAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATg                                              >  2:1746855/1‑91 (MQ=255)

                                             cAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATg                                              >  1:1251066/1‑91 (MQ=255)

                                              aaTAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATgg                                             <  2:599114/91‑1 (MQ=255)

                                              aaTAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATgg                                             <  1:3294624/91‑1 (MQ=255)

                                              aaTAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATgg                                             <  2:1476653/91‑1 (MQ=255)

                                              aaTAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATgg                                             >  1:3633221/1‑91 (MQ=255)

                                               aTAAATTAATCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGt                                            <  2:646620/91‑1 (MQ=255)

                                                 aaaTTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTAt                                          >  2:1970322/1‑91 (MQ=255)

                                                    ttAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTAtttt                                       <  1:716934/91‑1 (MQ=255)

                                                    ttAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTAtttt                                       <  1:1199967/91‑1 (MQ=255)

                                                    ttAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTCTTCTGAATATAAGGGCAATAGATGGTAtttt                                       <  1:987091/91‑1 (MQ=255)

                                                      aaGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTtat                                     >  1:2245291/1‑91 (MQ=255)

                                                       aGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTtata                                    >  2:1089581/1‑91 (MQ=255)

                                                        gCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATaa                                   <  2:1030580/91‑1 (MQ=255)

                                                          gACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTAATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAAtt                                 <  2:1999570/91‑1 (MQ=255)

                                                             aTAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAAttttt                              <  1:1662326/91‑1 (MQ=255)

                                                              tAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAAtttttt                             <  2:3000722/91‑1 (MQ=255)

                                                                aCGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTa                           <  1:767755/91‑1 (MQ=255)

                                                                aCGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTa                           <  2:1331902/91‑1 (MQ=255)

                                                                 cGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTaa                          >  2:3768140/1‑91 (MQ=255)

                                                                  gAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAg                         <  2:91405/91‑1 (MQ=255)

                                                                  gAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAg                         <  1:2637820/91‑1 (MQ=255)

                                                                  gAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAg                         >  1:3341218/1‑91 (MQ=255)

                                                                   aGGCAAGGGTACATGATACTTTAgcctcgttatgtcgcttaatttattgtaattgaattaaaatccaattaaagatttggagtaacccttt                        <  1:35152‑M2/91‑69 (MQ=255)

                                                                   aGGCAAGGGTACATGATACTTTAgcctcgttatgtcgcttaatttattgtaattgaattaaaatccaattaaagatttggagtaacccttt                        <  1:546717‑M2/91‑69 (MQ=255)

                                                                    ggCAAGGGTACATGATACTTTAgcctcgttatgtcgcttaatttattgtaattgaattaaaatccaattaaagatttggagtaaccctttt                       <  1:1112442‑M2/91‑70 (MQ=255)

                                                                     gCAAGGGTACATGATACTTTAgcctcgttatgtcgcttaatttattgtaattgaattaaaatccaattaaagatttggagtaacccttttt                      <  1:2883704‑M2/91‑71 (MQ=255)

                                                                      cAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAg                     <  2:2196119/91‑1 (MQ=255)

                                                                       aaGGGTACATGATACTTTAgcctcgttatgtcgcttaatttattgtaattgaattaaaatccaattaaagatttggagtaaccctttttgg                    <  2:276976‑M2/91‑73 (MQ=255)

                                                                        aGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTg                   >  1:1253269/1‑91 (MQ=255)

                                                                        aGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTg                   >  1:1458609/1‑91 (MQ=255)

                                                                        aGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTg                   >  1:3536298/1‑91 (MQ=255)

                                                                        aGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTg                   >  1:660933/1‑91 (MQ=255)

                                                                        aGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTg                   >  2:861618/1‑91 (MQ=255)

                                                                        aGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTg                   <  2:2321472/91‑1 (MQ=255)

                                                                        aGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTg                   <  2:1121347/91‑1 (MQ=255)

                                                                         gggTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGa                  >  2:3159566/1‑91 (MQ=255)

                                                                         gggTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGa                  <  1:1768833/91‑1 (MQ=255)

                                                                          ggTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGAt                 <  2:3883532/91‑1 (MQ=255)

                                                                           gTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGAtt                >  1:1675818/1‑91 (MQ=255)

                                                                             aCATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTaa              >  1:1059589/1‑91 (MQ=255)

                                                                             aCATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTaa              >  1:3656268/1‑91 (MQ=255)

                                                                               aTGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACa            <  1:2485768/91‑1 (MQ=255)

                                                                               aTGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGCATTTTATAATTTTTTTAAGGTAGTGATTAACa            >  1:3154182/1‑91 (MQ=255)

                                                                                 gATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAACGTAGTGATTAACATa          <  1:3312473/91‑1 (MQ=255)

                                                                                 gATACTTTAGCCTCGTTTTTGATATGCATGTTTCTGAATATAGGGGGGATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATa          <  1:2233540/91‑1 (MQ=255)

                                                                                  aTACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATAg         >  2:1812321/1‑91 (MQ=255)

                                                                                    aCTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATAGat       <  1:258204/91‑1 (MQ=255)

                                                                                    aCTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATAGat       >  2:1887905/1‑91 (MQ=255)

                                                                                    aCTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATAGat       <  1:732501/91‑1 (MQ=255)

                                                                                      tttAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATGACTTTTTTAAGGTAGTGATTAACATAGatat     >  1:3105836/1‑91 (MQ=255)

                                                                                       ttAGCCTCGTTTTTGATATGCATTTTTCTGAATCTAACGGCAATAGCTGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATAGATAtt    >  1:3093841/1‑91 (MQ=255)

                                                                                        tAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATAGATAttt   >  2:2873442/1‑91 (MQ=255)

                                                                                        tAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATAGATAttt   >  2:2598894/1‑91 (MQ=255)

                                                                                        tAGCCTCGTTTGTGATATGCATTTTTCGGAAGATACGGGCAATAGATGGTATTTTATAATTGTTTTAAGGTAGTGATTAACATAGATAttt   <  1:189456/91‑1 (MQ=255)

                                                                                         aGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATAGATATTTa  <  1:234584/91‑1 (MQ=255)

CAAAAAGGGTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATAGATATTTA  >  USA300TCH1516_ALE/1199223‑1199402

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.