BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1330548	182 (0.960)	25 (0.140)	13/148	NT	12.4%	intergenic (+23/‑124)	glpD/USA300HOU_RS06555	Aerobic glycerol‑3‑phosphate dehydrogenase/Monoacylglycerol lipase
*	?	USA300TCH1516_ALE	= 1330568	185 (1.050)	25 (0.140)	13/148	NT	12.4%	intergenic (+43/‑104)	glpD/USA300HOU_RS06555	Aerobic glycerol‑3‑phosphate dehydrogenase/Monoacylglycerol lipase

Only 100 of 255 total aligned reads displayed.

ATTAAAGAAGCGCAACATGGAAATAATCAACCAGCAGTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGATAATAATAAAAGCGAATATAAAAGCGTTGTTA  >  USA300TCH1516_ALE/1330478‑1330658

aTTAAAGAAGCGCAACATGGAAATAATCAACCAGCAGTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCAt                                                                                            <  2:2546528/91‑1 (MQ=255)

aTTAAAGAAGCGCAACATGGAAATAATCAACCAGCAGTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCAt                                                                                            >  2:167267/1‑91 (MQ=255)

aTTAAAGAAGCGCAACATGGAAATAATCAACCAGCAGTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCAt                                                                                            <  1:3199278/91‑1 (MQ=255)

aTTAAAGAAGCGCAACATGGAAATAATCAACCAGCAGTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCAt                                                                                            <  1:2034129/91‑1 (MQ=255)

aTTAAAGAAGCGCAACATGGAAATAATCAACCAGCAGTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTCTTAAGGGCAt                                                                                            >  2:737589/1‑91 (MQ=255)

   aaaGAAGCGCAACATGGAAATAATCAACCAGCAGTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATcag                                                                                         <  1:2550455‑M2/91‑4 (MQ=255)

     agaagCGCAACATGGAAATAATCAACCAGCAGTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATcagtt                                                                                       <  1:2836949‑M2/91‑6 (MQ=255)

      gaagCGCAACATGGAAATAATCAACCAGCAGTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATcagttt                                                                                      <  1:125897‑M2/91‑7 (MQ=255)

          cgcAACATGGAAATAATCAACCAGCAGTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGttttttt                                                                                  <  1:3040188/91‑1 (MQ=255)

             aaCATGGAAATAATCAACCAGCAGTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTtata                                                                               >  2:1074404/1‑91 (MQ=255)

             aaCATGGAAATAATCAACCAGCAGTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTtata                                                                               >  1:2528741/1‑91 (MQ=255)

              aCATGGAAATAATCAACCAGCAGTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATAc                                                                              >  2:3510196/1‑91 (MQ=255)

              aCATGGAAATAATCAACCAGCAGTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATAc                                                                              <  2:2561890/91‑1 (MQ=255)

              aCATGGAAATAATCAACCAGCAGTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATAc                                                                              >  2:2195544/1‑91 (MQ=255)

               cATGGAAATAATCAACCAGCAGTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACg                                                                             <  1:3186501/91‑1 (MQ=255)

                  ggAAATAATCAACCAGCAGTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACgaga                                                                          <  1:3135064/91‑1 (MQ=255)

                    aaaTAATCAACCAGCAGTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATa                                                                        >  2:2621102/1‑91 (MQ=255)

                     aataatCAACCAGCAGTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATAc                                                                       <  2:3239152/91‑1 (MQ=255)

                     aataatCAACCAGCAGTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATAc                                                                       <  2:1215288/91‑1 (MQ=255)

                     aataatCAACCAGCAGTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATAc                                                                       >  1:1100936/1‑91 (MQ=255)

                      ataatCAACCAGCAGTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACa                                                                      <  2:654846/91‑1 (MQ=255)

                         atCAACCAGCAGTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTa                                                                   >  2:1741775/1‑91 (MQ=255)

                          tCAACCAGCAGTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAg                                                                  <  2:1746896/91‑1 (MQ=255)

                           cAACCAGCAGTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGt                                                                 >  2:2049124/1‑91 (MQ=255)

                           cAACCAGCAGTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGt                                                                 <  1:1188220/91‑1 (MQ=255)

                             aCCAGCAGTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCa                                                               >  1:3749129/1‑91 (MQ=255)

                              ccAGCAGTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCaa                                                              >  1:3466289/1‑91 (MQ=255)

                              ccAGCAGTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTACTCaa                                                              >  1:3227629/1‑91 (MQ=255)

                               cagcagTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAAt                                                             >  2:1468168/1‑91 (MQ=255)

                                 gcagTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTg                                                           >  1:1493989/1‑91 (MQ=255)

                                   agTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGaa                                                         >  1:1168719/1‑91 (MQ=255)

                                   agTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGaa                                                         <  1:3641786/91‑1 (MQ=255)

                                    gTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGa                                                          <  2:150879/89‑1 (MQ=255)

                                    gTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGa                                                          >  1:150879/1‑89 (MQ=255)

                                     ttAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAAc                                                       <  1:778363/91‑1 (MQ=255)

                                     ttAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAAc                                                       >  1:3694610/1‑91 (MQ=255)

                                       aaaGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTa                                                     >  1:2276456/1‑91 (MQ=255)

                                         aGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATg                                                   <  1:446149/91‑1 (MQ=255)

                                          gAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATcagtttatgattgtacaaattaattattctttaactgctggt                                                  <  1:100324‑M2/91‑43 (MQ=255)

                                          gAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGc                                                  <  2:2528741/91‑1 (MQ=255)

                                          gAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGc                                                  >  2:1817025/1‑91 (MQ=255)

                                          gAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGc                                                  >  1:2130668/1‑91 (MQ=255)

                                          gAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGc                                                  <  1:2150301/91‑1 (MQ=255)

                                           aataatTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCa                                                 <  2:3584456/91‑1 (MQ=255)

                                           aataatTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCa                                                 <  2:1521694/91‑1 (MQ=255)

                                                ttaattTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACt                                            >  2:3681666/1‑91 (MQ=255)

                                                 taattTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTa                                           <  2:1863496/91‑1 (MQ=255)

                                                   attTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTaaa                                         >  1:513/1‑91 (MQ=255)

                                                     ttGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATg                                       <  1:952854/91‑1 (MQ=255)

                                                       gTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTa                                     <  1:929272/91‑1 (MQ=255)

                                                         aCAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATg                                   <  1:1594323/91‑1 (MQ=255)

                                                          cAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTGTACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGa                                  >  2:2503530/1‑91 (MQ=255)

                                                             tCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGataa                               >  1:2670121/1‑91 (MQ=255)

                                                              cATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGataat                              <  2:3405328/91‑1 (MQ=255)

                                                               aTAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGataata                             >  1:1426880/1‑91 (MQ=255)

                                                                 aaaCTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGataataat                           <  1:899547/91‑1 (MQ=255)

                                                                 aaaCTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGataataat                           <  2:878268/91‑1 (MQ=255)

                                                                 aaaCTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGataataat                           >  2:3045648/1‑91 (MQ=255)

                                                                 aaaCTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGataataat                           >  1:82824/1‑91 (MQ=255)

                                                                  aaCTGGTGTCCTGTTTTAAGGGCATcagtttatgattgtacaaattaattattctttaactgctggttgattatttccatgttgcgcttct                          <  1:2813988‑M2/91‑67 (MQ=255)

                                                                  aaCTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGataataata                          >  1:1799511/1‑91 (MQ=255)

                                                                   aCTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGAtaataataa                         >  2:1557035/1‑91 (MQ=255)

                                                                    cTGGTGTCCTGTTTTAAGGGCATcagtttatgattgtacaaattaattattctttaactgctggttgattatttccatgttgcgcttcttt                        <  1:1183132‑M2/91‑69 (MQ=255)

                                                                    cTGGTGTCCTGTTTTAAGGGCATcagtttatgattgtacaaattaattattctttaactgctggttgattatttccatgttgcgcttcttt                        <  2:264508‑M2/91‑69 (MQ=255)

                                                                     tGGTGTCCTGTTTTAAGGGCATcagtttatgattgtacaaattaattattctttaactgctggttgattatttccatgttgcgcttcttta                       <  2:1350756‑M2/91‑70 (MQ=255)

                                                                     tGGTGTCCTGTTTTAAGGGCATcagtttatgattgtacaaattaattattctttaactgctggttgattatttccatgttgcgcttcttta                       <  2:3664609‑M2/91‑70 (MQ=255)

                                                                     tGGTGTCCTGTTTTAAGGGCATcagtttatgattgtacaaattaattattctttaactgctggttgattatttccatgttgcgcttcttta                       <  1:353050‑M2/91‑70 (MQ=255)

                                                                     tGGTGTCCTGTTTTAAGGGCATcagtttatgattgtacaaattaattattctttaactgctggttgattatttccatgttgcgcttcttta                       <  2:236887‑M2/91‑70 (MQ=255)

                                                                      ggTGTCCTGTTTTAAGGGCATcagtttatgattgtacaaattaattattctttaactgctggttgattatttccatgttgcgcttctttaa                      <  2:567246‑M2/91‑71 (MQ=255)

                                                                      ggTGTCCTGTTTTAAGGGCATcagtttatgattgtacaaaataattattctttaactgctggttgactatttccatgttgcgcttctttaa                      <  2:3597168‑M2/91‑71 (MQ=255)

                                                                      ggTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGATAATAATAAAAg                      >  1:3719407/1‑91 (MQ=255)

                                                                        tgtCCTGTTTTAAGGGGATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGATAATAATAAAAGCg                    <  2:2981285/91‑1 (MQ=255)

                                                                        tgtCCTGTTTTAAGGGCATcagtttatgattatacaaattaattattctttaactgctggttgattatttccatgttgcgcttctttaatt                    <  2:2436011‑M2/91‑73 (MQ=255)

                                                                          tCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGATAATAATAAAAGCGaa                  >  2:417805/1‑91 (MQ=255)

                                                                            cTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGATAATAATAAAAGCGAata                >  1:1830432/1‑91 (MQ=255)

                                                                            cTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGATAATAATAAAAGCGAata                >  1:1496939/1‑91 (MQ=255)

                                                                            cTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGATAATAATAAAAGCGAata                <  2:1052146/91‑1 (MQ=255)

                                                                             tGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGATAATAATAAAAGCGAatat               <  1:3389755/91‑1 (MQ=255)

                                                                             tGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGATAATAATAAAAGCGAatat               <  1:1984117/91‑1 (MQ=255)

                                                                             tGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGATAATAATAAAAGCGAatat               >  1:1899734/1‑91 (MQ=255)

                                                                             tGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACGAAATGTATGATAATAATAAAAGCGAatat               <  2:3837448/91‑1 (MQ=255)

                                                                              gTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGATAATAATAAAAGCGAAtata              >  2:1954033/1‑91 (MQ=255)

                                                                              gTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGATAATAATAAAAGCGAAtata              >  1:650458/1‑91 (MQ=255)

                                                                               ttttAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGATAATAATAAAAGCGAATATaa             <  1:2621102/91‑1 (MQ=255)

                                                                                  tAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGATAATAATAAAAGCGAATATAAAAg          <  2:9451/91‑1 (MQ=255)

                                                                                  tAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGATAATAATAAAAGCGAATATAAAAg          >  2:1396800/1‑91 (MQ=255)

                                                                                  tAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGATAATAATAAAAGCGAATATAAAAg          <  1:2969235/91‑1 (MQ=255)

                                                                                  tAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGATAATAATAAAAGCGAATATAAAAg          >  1:3787739/1‑91 (MQ=255)

                                                                                  tAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGATAATAATAAAACCGAATATAAAAg          <  1:2970533/91‑1 (MQ=255)

                                                                                    aGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTATATGTATGATAATAATAAAAGCGCATATAAAAGCg        >  2:288822/1‑91 (MQ=255)

                                                                                    aGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGATAATAATAAAAGCGAATATAAAAGCg        >  2:894893/1‑91 (MQ=255)

                                                                                     gggCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGATAATAATAAAAGCGAATATAAAAGCgt       >  2:3286607/1‑91 (MQ=255)

                                                                                     gggCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGATAATAATAAAAGCGAATATAAAAGCgt       >  2:3790601/1‑91 (MQ=255)

                                                                                      ggCATCAGTTTTTTTATTTGTTATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGATAATAATAAAAGCGAATATAAAAGCgtt      >  2:486614/1‑91 (MQ=255)

                                                                                      ggCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGATAATAATAAAAGCGAATATAAAAGCgtt      >  1:2871171/1‑91 (MQ=255)

                                                                                       gCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGATAATAATAAAAGCGAATATAAAAGCgttg     <  1:1970477/91‑1 (MQ=255)

                                                                                       gCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGATAATAATAAAAGCGAATATAAAAGCgttg     >  2:1262884/1‑91 (MQ=255)

                                                                                        cATCAGTTTTTTTATACGAGATACCTTAGTCAATTGAAACTATGACTCACTAAATGTATGATAATAATAAAAGCGAATATAAAAGCgttgt    >  1:593156/1‑91 (MQ=255)

                                                                                         aTCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGATAATAATAAAAGCGAATATAAAAGCgttgtt   <  1:2935257/91‑1 (MQ=255)

                                                                                          tCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGATAATAATAAAAGCGAATATAAAAGCGTTGtta  >  1:341173/1‑91 (MQ=255)

ATTAAAGAAGCGCAACATGGAAATAATCAACCAGCAGTTAAAGAATAATTAATTTGTACAATCATAAACTGGTGTCCTGTTTTAAGGGCATCAGTTTTTTTATACGAGATACATTAGTCAATTGAAACTATGCATCACTAAATGTATGATAATAATAAAAGCGAATATAAAAGCGTTGTTA  >  USA300TCH1516_ALE/1330478‑1330658

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.