BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1353906	170 (0.890)	15 (0.090)	12/134	NT	9.9%	intergenic (+99/+44)	nucH/USA300HOU_RS06735	Thermonuclease/hypothetical protein
*	?	USA300TCH1516_ALE	= 1353932	131 (0.820)	15 (0.090)	12/134	NT	9.9%	intergenic (+125/+18)	nucH/USA300HOU_RS06735	Thermonuclease/hypothetical protein

Only 100 of 286 total aligned reads displayed.

TACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTCG  >  USA300TCH1516_ALE/1353842‑1354022

taCTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGa                                                                                            <  1:3505945/91‑1 (MQ=255)

   ttaaataaagaacaggttgatcaaatcacagctatattcaagtaaaatcAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGatta                                                                                         >  2:2589456‑M1/50‑91 (MQ=255)

   ttaaataaagaacaggttgatcaaatcacagctatattcaagtaaaatcAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGatta                                                                                         >  1:515306‑M1/50‑91 (MQ=255)

   ttGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAtta                                                                                         >  1:2876323‑M2/1‑88 (MQ=255)

   ttGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAtta                                                                                         <  2:462150‑M2/91‑4 (MQ=255)

    taaataaagatcaggttgatcaaatcacagctatattcaagtaaaatcAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGattat                                                                                        >  2:3299885‑M1/49‑91 (MQ=255)

      aaGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttatta                                                                                      >  2:3793992‑M2/1‑85 (MQ=255)

      aaGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttatta                                                                                      <  1:262216‑M2/91‑7 (MQ=255)

       ataaagaacaggttgatcaaatcacagctatattcaagtaaaatcAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATtattat                                                                                     >  2:2493179‑M1/46‑91 (MQ=255)

       aGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttattat                                                                                     >  1:863633‑M2/1‑84 (MQ=255)

       aGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttattat                                                                                     >  2:2348548‑M2/1‑84 (MQ=255)

       aGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttatcat                                                                                     <  2:3597192‑M2/91‑8 (MQ=255)

         cATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttattatgc                                                                                   >  2:2196366‑M2/1‑82 (MQ=255)

          aTCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttattatgcc                                                                                  <  1:214018‑M2/91‑11 (MQ=255)

           tCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttattatgcct                                                                                 >  1:1718414‑M2/1‑80 (MQ=255)

            cGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttattatgcctt                                                                                >  1:1984811‑M2/1‑79 (MQ=255)

             gATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttattatgccttt                                                                               >  2:3185876‑M2/1‑78 (MQ=255)

              aTTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTg                                                                              <  2:208498/91‑1 (MQ=255)

              aTTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTg                                                                              >  1:2113590/1‑91 (MQ=255)

              aTTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTg                                                                              <  2:1055534/91‑1 (MQ=255)

                ttattattaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGGTTATTATGCCTTTGAt                                                                            <  1:1512630/91‑1 (MQ=255)

                ttattattaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGAt                                                                            >  1:1003011/1‑91 (MQ=255)

                 tattattaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGAtt                                                                           >  2:375678/1‑91 (MQ=255)

                 tattattaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGAtt                                                                           <  1:3727466/91‑1 (MQ=255)

                   ttattaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGAtttt                                                                         >  1:822446/1‑91 (MQ=255)

                   ttattaCCATAAATTTATACATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGAtttt                                                                         >  2:3395160/1‑91 (MQ=255)

                    tattaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTa                                                                        >  1:2700411/1‑91 (MQ=255)

                      ttaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACt                                                                      <  1:2088966/91‑1 (MQ=255)

                         ccATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATATTGAGTATCGAGCGTAAAGGATCATTATCACTTTGATTTTACTTGa                                                                   >  2:1535825/1‑91 (MQ=255)

                          cATAAATTTATATATAGACATAAATTAAAGGCATAAGATCCATAGTGCGTATCGAGCGTAATGGTTTATTAGGCCTTTGATTTTACTTGag                                                                  <  2:3672536/91‑2 (MQ=255)

                           aTAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttattatgcct                                                                                 >  1:1621042‑M2/1‑64 (MQ=255)

                            tAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAata                                                                >  2:2643468/1‑91 (MQ=255)

                              aaTTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAAtata                                                              >  1:2546638/1‑91 (MQ=255)

                              aaTTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAAtata                                                              <  2:1969456/91‑1 (MQ=255)

                              aaTTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAAtata                                                              <  1:1253794/91‑1 (MQ=255)

                               aTTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAg                                                             <  2:3026781/91‑1 (MQ=255)

                               aTTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAg                                                             <  2:1930843/91‑1 (MQ=255)

                               aTTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCATATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAg                                                             <  2:875869/91‑1 (MQ=255)

                                 ttATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCt                                                           <  2:2381413/91‑1 (MQ=255)

                                  tatatataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCtg                                                          >  2:2151863/1‑91 (MQ=255)

                                  tatatataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCtg                                                          <  1:2370712/91‑1 (MQ=255)

                                   atatataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttattatgcctttaaattatttctatatataaatt                                                         <  1:438800‑M2/91‑36 (MQ=255)

                                     atataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGa                                                       <  2:1218179/91‑1 (MQ=255)

                                     atataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGa                                                       >  1:3104754/1‑91 (MQ=255)

                                     atataGAAATAACTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttattatgcctttaaattatttctatatataaagtta                                                       <  1:2999550‑M2/91‑38 (MQ=255)

                                      tataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGAt                                                      <  1:2466437/91‑1 (MQ=255)

                                          gAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGa                                                  >  2:670960/1‑91 (MQ=255)

                                            aataatTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttattatgcctttaaattatttctatatataaatttatggtaat                                                <  2:753959‑M2/91‑45 (MQ=255)

                                             ataatTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCa                                               <  1:3232902/91‑1 (MQ=255)

                                             ataatTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCa                                               <  1:1954550/91‑1 (MQ=255)

                                              taatTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCaa                                              >  2:203290/1‑91 (MQ=255)

                                              taatTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCaa                                              <  2:1758835/91‑1 (MQ=255)

                                               aatTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAAc                                             <  2:482295/91‑1 (MQ=255)

                                               aatTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAAc                                             >  2:1363603/1‑91 (MQ=255)

                                                atTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAAcc                                            <  2:262802/91‑1 (MQ=255)

                                                atTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAAcc                                            >  2:3100458/1‑91 (MQ=255)

                                                   tAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttattatgcctttaaattatttctatatataaatttatggtaataataaat                                         <  1:952896‑M2/91‑52 (MQ=255)

                                                   tAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGt                                         >  1:1177574/1‑91 (MQ=255)

                                                    AAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGtt                                        <  1:3461767‑M1/91‑1 (MQ=255)

                                                    AAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGtt                                        <  2:1425734‑M1/91‑1 (MQ=255)

                                                    AAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGtt                                        <  1:42151‑M1/91‑1 (MQ=255)

                                                      AGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCt                                      >  2:2563534‑M1/1‑91 (MQ=255)

                                                        GCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCttt                                    <  2:325029‑M1/91‑1 (MQ=255)

                                                        GCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCttt                                    >  2:3826651‑M1/1‑91 (MQ=255)

                                                        GCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCttt                                    >  1:3173897‑M1/1‑91 (MQ=255)

                                                          ATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtttat                                  <  1:3596329‑M1/91‑1 (MQ=255)

                                                           TAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtttatt                                 <  2:448117‑M1/91‑1 (MQ=255)

                                                             ATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtttattta                               <  1:3760545‑M1/91‑1 (MQ=255)

                                                             ATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtttattta                               >  1:2643468‑M1/1‑91 (MQ=255)

                                                              TAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTaa                              >  2:3469591‑M1/1‑91 (MQ=255)

                                                              TAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTaa                              >  1:2191581‑M1/1‑91 (MQ=255)

                                                                 ccATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAgg                           <  2:1104986/91‑1 (MQ=255)

                                                                 ccATAGTGCGTATCGAGCGTAATGGATTATTATCCCTCTGATTTTACTTGAATATAGCTATGATTTGATCAACCTGTTCTTTATTTAAAgg                           >  1:3099654/1‑91 (MQ=255)

                                                                  cATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAggg                          >  1:309123/1‑91 (MQ=255)

                                                                   aTAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTc                                       <  1:2009153/77‑1 (MQ=255)

                                                                     aGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTC‑TTATTTAAAGGGTGtt                      >  1:1421990/1‑91 (MQ=255)

                                                                       tGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGttt                     >  1:1308462/1‑91 (MQ=255)

                                                                         cGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAg                   >  2:1656325/1‑91 (MQ=255)

                                                                         cGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAg                   >  1:3841893/1‑91 (MQ=255)

                                                                         cGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTCAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTACAGGGTGTTTAg                   >  2:2957055/1‑91 (MQ=255)

                                                                          gTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGa                  <  2:240696/91‑1 (MQ=255)

                                                                           tATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGAt                 >  2:1593745/1‑91 (MQ=255)

                                                                              cGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGc              <  1:1060284/91‑1 (MQ=255)

                                                                                aGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGctc            <  2:2341434/91‑1 (MQ=255)

                                                                                aGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGctc            >  1:2911092/1‑91 (MQ=255)

                                                                                aGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGctc            >  1:239650/1‑91 (MQ=255)

                                                                                aGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGctc            <  1:2958851/91‑1 (MQ=255)

                                                                                 gCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGctct           <  1:3402447/91‑1 (MQ=255)

                                                                                 gCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGctct           >  2:2106468/1‑91 (MQ=255)

                                                                                  cGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTa          <  2:2860280/91‑1 (MQ=255)

                                                                                  cGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTa          >  1:3169676/1‑91 (MQ=255)

                                                                                  cGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTa          <  1:3328683/91‑1 (MQ=255)

                                                                                   gTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTAt         <  1:1988309/91‑1 (MQ=255)

                                                                                      aTGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGc      <  1:155293/91‑1 (MQ=255)

                                                                                      aTGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGc      >  2:1826097/1‑91 (MQ=255)

                                                                                       tGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCt     <  1:1034681/91‑1 (MQ=255)

                                                                                        ggATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCTACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCtt    >  1:3868859/1‑91 (MQ=255)

                                                                                         gATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTc   >  1:1782979/1‑91 (MQ=255)

                                                                                         gATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTc   <  1:312524/91‑1 (MQ=255)

                                                                                          attattATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTCg  >  1:898984/1‑91 (MQ=255)

TACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTCG  >  USA300TCH1516_ALE/1353842‑1354022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.