BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1361481	142 (0.750)	22 (0.130)	12/140	NT	12.8%	intergenic (+20/+273)	USA300HOU_RS06765/USA300TCH1516_01271	Putative phosphatase/hypothetical protein
*	?	USA300TCH1516_ALE	= 1361509	176 (1.060)	22 (0.130)	12/140	NT	12.8%	intergenic (+48/+245)	USA300HOU_RS06765/USA300TCH1516_01271	Putative phosphatase/hypothetical protein

Only 100 of 235 total aligned reads displayed.

TAATGAAAATGGTATTCCACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAACG  >  USA300TCH1516_ALE/1361419‑1361598

 aaTGAAAATGGTATTCCACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGg                                                                                          <  1:718702‑M2/91‑2 (MQ=255)

  aTGAAAATGGTATTCCACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGgt                                                                                         >  1:853756‑M2/1‑89 (MQ=255)

    gAAAATGGTATTCCACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGgtta                                                                                       <  1:1597616‑M2/91‑5 (MQ=255)

      aaaTGGTATTCCACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGgttaag                                                                                     <  2:3408155‑M2/91‑7 (MQ=255)

         tGGTATTCCACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGgttaaggct                                                                                  <  1:1270735‑M2/91‑10 (MQ=255)

         tGGTATTCCACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGgttaaggct                                                                                  <  2:2586197‑M2/91‑10 (MQ=255)

         tGGTATTCCACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGgttaaggct                                                                                  <  2:2330992‑M2/91‑10 (MQ=255)

          ggTATTCCACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGgttaaggctt                                                                                 >  2:829158‑M2/1‑81 (MQ=255)

            tATTCCACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCtttt                                                                               <  1:3503288/91‑1 (MQ=255)

             aTTCCACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCttttt                                                                              <  2:3302175/91‑1 (MQ=255)

             aTTCCACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGACATCTTGTGGTTAAGGCttttt                                                                              >  2:16117/1‑91 (MQ=255)

              ttCCACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTa                                                                             <  2:3085402/91‑1 (MQ=255)

              ttCCACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTa                                                                             >  1:165492/1‑91 (MQ=255)

              ttCCACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTa                                                                             >  2:676021/1‑91 (MQ=255)

                ccACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTAtt                                                                           <  1:356795/91‑1 (MQ=255)

                ccACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTAtt                                                                           >  1:631973/1‑91 (MQ=255)

                 cacaTGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTAttt                                                                          >  2:3415178/1‑91 (MQ=255)

                  acaTGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTAtttt                                                                         <  1:2828382/91‑1 (MQ=255)

                    aTGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTtg                                                                       <  2:1641699/91‑1 (MQ=255)

                     tGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTtgt                                                                      <  2:2140334/91‑1 (MQ=255)

                      gcgcTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTtgtg                                                                     <  2:3387716/91‑1 (MQ=255)

                        gcTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGaa                                                                   <  2:1032303/91‑1 (MQ=255)

                        gcTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGaa                                                                   >  1:244031/1‑91 (MQ=255)

                        gcTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGaa                                                                   <  2:668774/91‑1 (MQ=255)

                         cTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGaaa                                                                  >  2:3829944/1‑91 (MQ=255)

                           cAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAAt                                                                >  1:240926/1‑91 (MQ=255)

                             aaaaaTTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGa                                                              >  1:1018730/1‑91 (MQ=255)

                             aaaaaTTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGa                                                              <  2:2667369/91‑1 (MQ=255)

                               aaaTTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACt                                                            >  2:2046686/1‑91 (MQ=255)

                                 aTTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTc                                                          <  2:3280013/91‑1 (MQ=255)

                                 aTTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTc                                                          <  2:2125329/91‑1 (MQ=255)

                                  ttGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCa                                                         >  1:3823167/1‑91 (MQ=255)

                                   tGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAg                                                        <  2:3519439/91‑1 (MQ=255)

                                    gTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGt                                                       <  2:910964/91‑1 (MQ=255)

                                    gTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGt                                                       >  2:1944982/1‑91 (MQ=255)

                                    gTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGt                                                       <  2:2793815/91‑1 (MQ=255)

                                     ttATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGtt                                                      <  1:560146/91‑1 (MQ=255)

                                      tataAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTta                                                     >  1:3839627/1‑91 (MQ=255)

                                       ataAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGgttaaggcttattttacaatttataacaattttttgagc                                                    <  2:3124612‑M2/91‑40 (MQ=255)

                                       ataAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTtat                                                    >  2:2183825/1‑91 (MQ=255)

                                       ataAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTtat                                                    <  2:718702/91‑1 (MQ=255)

                                          aaTTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACt                                                 <  2:1464945/91‑1 (MQ=255)

                                           aTTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTa                                                <  1:2133517/91‑1 (MQ=255)

                                           aTTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTa                                                <  1:2586197/91‑1 (MQ=255)

                                            ttttAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATAACTTCAGTTATACTAt                                               >  2:2227275/1‑91 (MQ=255)

                                             tttAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATg                                              <  1:1866874/91‑1 (MQ=255)

                                              ttAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGgttaaggcttattttaaaatttataacaattttttgagcgcatgtg                                             <  1:1055136‑M2/91‑47 (MQ=255)

                                              ttAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGgttaaggcttattttaaaatttataacaattttttgagcgcatgtg                                             <  1:3664127‑M2/91‑47 (MQ=255)

                                              ttAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGgttaaggcttattttaaaatttataacaattttttgagcgaatgtg                                             <  2:3578240‑M2/91‑47 (MQ=255)

                                              ttAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATgg                                             >  1:1354717/1‑91 (MQ=255)

                                               tAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGt                                                       >  2:1493114/1‑80 (MQ=255)

                                               tAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGt                                                       <  1:1493114/80‑1 (MQ=255)

                                                aaaaTAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATggag                                           <  1:3773889/91‑1 (MQ=255)

                                                aaaaTAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACCTCAGTTATACTATggag                                           <  1:3187561/91‑1 (MQ=255)

                                                  aaTAGGCCTTAACACATGGTATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATggagga                                         <  2:1629527/91‑1 (MQ=255)

                                                  aaTAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATggagga                                         <  1:1173560/91‑1 (MQ=255)

                                                  aaTAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATggagga                                         >  1:2950427/1‑91 (MQ=255)

                                                  aaTAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATggagga                                         <  2:3173820/91‑1 (MQ=255)

                                                  aaTAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTAAGTTATACTATggaggt                                         >  2:3852394/1‑90 (MQ=255)

                                                  aaTAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAACGACTTCAGTTACACTATggagga                                         >  2:2958280/1‑91 (MQ=255)

                                                    tAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGgttaaggcttattttaaaatttataacaattttttgagcgcatgtggaatac                                       <  2:426214‑M2/91‑53 (MQ=255)

                                                    tAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGgttaaggcttattttaaaatttataacaattttttgagcgcatgtggaatac                                       <  2:2083192‑M2/91‑53 (MQ=255)

                                                         cTTAACACATGATATTTGAATAAGATATCTTGTGgttaaggcttattttaaaatttataacaattttttgagcgcatgtggaataccattt                                  <  1:2073886‑M2/91‑58 (MQ=255)

                                                          ttAACACATGATATTTGAATAAGATATCTTGTGgttaaggcttattttaaaatttataacaattttttgagcgcatgtggaataccatttt                                 <  1:1738884‑M2/91‑59 (MQ=255)

                                                           tAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATa                                <  1:787957/91‑1 (MQ=255)

                                                           tAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATa                                <  2:2772742/91‑1 (MQ=255)

                                                           tAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATa                                <  2:260106/91‑1 (MQ=255)

                                                            aaCACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATAc                               >  2:1271980/1‑91 (MQ=255)

                                                             acacATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACa                              >  2:93776/1‑91 (MQ=255)

                                                              cacaTGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACat                             <  2:159740/91‑1 (MQ=255)

                                                              cacaTGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACat                             <  1:2220881/91‑1 (MQ=255)

                                                                 aTGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATAtt                          <  1:2342753/91‑1 (MQ=255)

                                                                 aTGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATAtt                          >  1:2070543/1‑91 (MQ=255)

                                                                  tGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATAttt                         >  2:1062801/1‑91 (MQ=255)

                                                                    atatTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTa                       <  1:432259/91‑1 (MQ=255)

                                                                    atatTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTa                       >  1:1581330/1‑91 (MQ=255)

                                                                     tatTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAg                      <  2:2303310/91‑1 (MQ=255)

                                                                      atTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGa                     >  2:565534/1‑91 (MQ=255)

                                                                      atTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGa                     <  2:3190876/91‑1 (MQ=255)

                                                                      atTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACATCAGTTATACTATGGAGGATTTGAAATACATATTTTAGa                     <  2:1970368/91‑1 (MQ=255)

                                                                       tttGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGAt                    >  1:2854571/1‑91 (MQ=255)

                                                                        ttGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGAtt                   >  2:2433438/1‑91 (MQ=255)

                                                                          gAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAg                 <  1:2386289/91‑1 (MQ=255)

                                                                           aaTAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGt                <  1:3050899/91‑1 (MQ=255)

                                                                            aTAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTa               <  1:2939309/91‑1 (MQ=255)

                                                                              aaGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAAt             <  1:3417999/91‑1 (MQ=255)

                                                                              aaGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAAt             <  1:2825806/91‑1 (MQ=255)

                                                                              aaGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTAGGGAGGATTTGAAATACATATTTTAGATTAGTAAt             <  1:1237350/91‑1 (MQ=255)

                                                                               aGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATg            <  2:2006251/91‑1 (MQ=255)

                                                                               aGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATg            <  1:2706110/91‑1 (MQ=255)

                                                                               aGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATg            <  2:629235/91‑1 (MQ=255)

                                                                                 atatCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGat          >  2:1721915/1‑91 (MQ=255)

                                                                                   atCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATGAGTAATGatat        >  1:3524387/1‑91 (MQ=255)

                                                                                    tCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATc       >  2:3752457/1‑91 (MQ=255)

                                                                                     cTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATAtt                          <  2:3354330/71‑1 (MQ=255)

                                                                                     cTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATAtt                          >  1:3354330/1‑71 (MQ=255)

                                                                                      ttGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCaa     <  1:2032928/91‑1 (MQ=255)

                                                                                       tgtgGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCaaa    >  1:3694865/1‑91 (MQ=255)

                                                                                       tgtgGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCaaa    <  2:2630095/91‑1 (MQ=255)

                                                                                        gtgGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAAc   >  2:1231894/1‑91 (MQ=255)

TAATGAAAATGGTATTCCACATGCGCTCAAAAAATTGTTATAAATTTTAAAATAAGCCTTAACACATGATATTTGAATAAGATATCTTGTGGTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAACG  >  USA300TCH1516_ALE/1361419‑1361598

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.