BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1439024	182 (0.960)	21 (0.120)	12/146	NT	11.2%	intergenic (+22/+218)	lysA/USA300HOU_RS07135	Diaminopimelate decarboxylase/hypothetical protein
*	?	USA300TCH1516_ALE	= 1439047	168 (0.970)	21 (0.120)	12/146	NT	11.2%	intergenic (+45/+195)	lysA/USA300HOU_RS07135	Diaminopimelate decarboxylase/hypothetical protein

Only 100 of 265 total aligned reads displayed.

AAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGA  >  USA300TCH1516_ALE/1438958‑1439137

  gCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcg                                                                                         >  2:3431506‑M2/1‑88 (MQ=255)

   agaCAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAGCATAGTAATCCCCGATGCACAGAAAATTATACTGTGACtcgt                                                                                        >  2:2267778‑M2/2‑87 (MQ=255)

    gACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcggg                                                                                       >  1:1014690‑M2/1‑86 (MQ=255)

    gACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcggg                                                                                       >  2:1792448‑M2/1‑86 (MQ=255)

     ttttagagtatatgtccaagcatgttttctacagtcatctataatgcataaaaatTCCCCGAAGCACAGAAAATTATACTGTGACTCgggg                                                                                      >  1:2565781‑M1/56‑91 (MQ=255)

     ttttagagtatatgtccaagcatgttttctacagtcatctataatgcataaaaatTCCCCGAAGCACAGAAAATTATACTGTGACTCgggg                                                                                      >  1:1724888‑M1/56‑91 (MQ=255)

      tttagagtatatgtccaagcatgttttctacagtcatctataatgcataaaaatTCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGa                                                                                     >  1:1394889‑M1/55‑91 (MQ=255)

      cAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcgggga                                                                                     <  1:3551075‑M2/91‑8 (MQ=255)

        aTCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAt                                                                                   <  1:1457929/91‑1 (MQ=255)

        aTCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAt                                                                                   <  2:2529424/91‑1 (MQ=255)

          cGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAttt                                                                                 >  2:2684560/1‑91 (MQ=255)

          cGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAttt                                                                                 >  1:2168035/1‑91 (MQ=255)

          cGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAttt                                                                                 <  2:2541363/91‑1 (MQ=255)

           gTTAAGACAACTCATTATTAATGATACGAAATAAAAATAAACAAAGTGATCCCCGAAGCACAGAAACCTATACTGTGACTCGGGGAAtttt                                                                                >  2:3611164/1‑91 (MQ=255)

           gTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAtttt                                                                                >  1:733626/1‑91 (MQ=255)

            ttAAGCCAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAttttt                                                                               <  2:3573902/91‑1 (MQ=255)

            ttAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAttttt                                                                               >  2:451412/1‑91 (MQ=255)

             tAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTa                                                                              <  2:387148/91‑1 (MQ=255)

              aaGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTAt                                                                             >  2:312474/1‑91 (MQ=255)

              aaGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTAt                                                                             <  1:243631/91‑1 (MQ=255)

                gACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGc                                                                           <  1:964547/91‑1 (MQ=255)

                  cAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCAt                                                                         <  2:1012028/91‑1 (MQ=255)

                  cAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCAt                                                                         >  1:3215048/1‑91 (MQ=255)

                    aCTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATta                                                                       >  1:1084017/1‑91 (MQ=255)

                    aCTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATta                                                                       >  2:3466061/1‑91 (MQ=255)

                     cTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATtat                                                                      >  1:120257/1‑91 (MQ=255)

                     cTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATtat                                                                      >  2:644859/1‑91 (MQ=255)

                     cTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATtat                                                                      >  1:513663/1‑91 (MQ=255)

                       cATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAg                                                                    >  1:2495416/1‑91 (MQ=255)

                       cATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAg                                                                    <  2:221981/91‑1 (MQ=255)

                          tattaATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTCTTATGCATTATAGATg                                                                 >  2:3705663/1‑91 (MQ=255)

                              aaTGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTg                                                             >  1:3373662/1‑91 (MQ=255)

                                 gATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAg                                                          <  1:481453/91‑1 (MQ=255)

                                  aTACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGa                                                         >  1:2664214/1‑91 (MQ=255)

                                    aCAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGaaa                                                       <  2:1491615/91‑1 (MQ=255)

                                     cAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGaaaa                                                      >  2:3240209/1‑91 (MQ=255)

                                      aaaatgaaaataAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAAc                                                     <  2:2067815/91‑1 (MQ=255)

                                      aaaataaaaataAACAAAGTAATCCCCGAAGCACAGGAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAAc                                                     <  1:1122512/91‑1 (MQ=255)

                                      aaaataaaaataAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAAc                                                     >  2:2641485/1‑91 (MQ=255)

                                      aaaataaaaataAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAAc                                                     <  2:3265725/91‑1 (MQ=255)

                                      aaaataaaaataAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAAc                                                     <  1:692814/91‑1 (MQ=255)

                                      aaaataaaaataAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAAc                                                     >  2:1930218/1‑91 (MQ=255)

                                       aaatagaaataaACAAAGTGATCCCTGAAGCACAGAAAAATATACTGTGACTCAGGGAATTTTTATGCATTATAGATGACTGTAGAAAACa                                                    <  1:3611164/91‑1 (MQ=255)

                                        aataaaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACAt                                                   >  2:2095763/1‑91 (MQ=255)

                                        aataaaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACAt                                                   >  1:3196679/1‑91 (MQ=255)

                                           aaaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCt                                                <  2:2512312/91‑1 (MQ=255)

                                            aaaataatCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCtt                                               <  1:1930218/91‑1 (MQ=255)

                                            aaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCtt                                               <  2:1563318/91‑1 (MQ=255)

                                                taaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcggggattactttgtttatttttattttgtatcattaataatgagttg                                           <  1:1137238‑M2/91‑50 (MQ=255)

                                                taaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGAc                                           >  2:1055531/1‑91 (MQ=255)

                                                 aaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACa                                          <  1:833385/91‑1 (MQ=255)

                                                    cAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACatat                                       >  1:694137/1‑91 (MQ=255)

                                                    cAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACatat                                       >  1:2312482/1‑91 (MQ=255)

                                                      aaGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAc                                     >  2:514115/1‑91 (MQ=255)

                                                      aaGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAc                                     <  1:2999392/91‑1 (MQ=255)

                                                           aTCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaa                                >  1:2549434/1‑91 (MQ=255)

                                                           aTCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaa                                >  1:600634/1‑91 (MQ=255)

                                                           aTCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaa                                >  1:547396/1‑91 (MQ=255)

                                                           aTCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaa                                >  2:960025/1‑91 (MQ=255)

                                                           aTCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaa                                >  2:960301/1‑91 (MQ=255)

                                                            TCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaa                               <  2:1961668‑M1/91‑1 (MQ=255)

                                                              CCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaaa                             <  2:130913‑M1/91‑1 (MQ=255)

                                                              CCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaaa                             <  2:3345149‑M1/91‑1 (MQ=255)

                                                              CCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaaa                             >  2:3366885‑M1/1‑91 (MQ=255)

                                                              CCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaaa                             >  1:451412‑M1/1‑91 (MQ=255)

                                                              CCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaaa                             <  1:2830037‑M1/91‑1 (MQ=255)

                                                              CCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaaa                             <  2:2393657‑M1/91‑1 (MQ=255)

                                                               ccGAAGCACAGAAAATTATACTGTGACtcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtcg                            <  1:3816961‑M2/91‑65 (MQ=255)

                                                               ccGAAGCACAGAAAATTATACTGTGACtcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtcg                            <  1:343195‑M2/91‑65 (MQ=255)

                                                                cGAAGCACAGAAAATTATACTGTGACtcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtcgc                           <  1:2137349‑M2/91‑66 (MQ=255)

                                                                aaaaccACATAAAATTATACTGTGACtcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattttcgc                           <  2:974887‑M2/89‑66 (MQ=255)

                                                                  AAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGa                         >  1:266790‑M1/1‑91 (MQ=255)

                                                                    gCACAGAAAATTATACTGTGACtcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtcgcttta                       <  2:246857‑M2/91‑70 (MQ=255)

                                                                    gCACAGAAAATTATACTGTGACtcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtcgcttta                       <  1:1549136‑M2/91‑70 (MQ=255)

                                                                    gCACAGAAAATTATACTGTGACtcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtcgcttta                       <  2:54833‑M2/91‑70 (MQ=255)

                                                                    gCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGgaag                       >  2:2880519/1‑91 (MQ=255)

                                                                    gCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGgaag                       >  2:2978042/1‑91 (MQ=255)

                                                                    gCAAAGAAAATTATACTGTGAATCGGGGAATGTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGgaag                       <  2:1414454/91‑1 (MQ=255)

                                                                     cacaGAAAATTATACTGTGACtcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtcgctttat                      <  1:329086‑M2/91‑71 (MQ=255)

                                                                      acaGAAAATTATACTGTGACtcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtcgctttata                     <  1:2361966‑M2/91‑72 (MQ=255)

                                                                      acaGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGgaagaa                     <  1:2073103/91‑1 (MQ=255)

                                                                      acaGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGgaagaa                     >  2:1101601/1‑91 (MQ=255)

                                                                        aGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACa                   >  2:1185444/1‑91 (MQ=255)

                                                                         gAAAATTATACTGTGACtcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtcgctttataact                  <  1:653705‑M2/91‑75 (MQ=255)

                                                                         gAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAg                  <  1:3744666/91‑1 (MQ=255)

                                                                          aaaaTTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAAAATAAAAAAGGAAGAACAGc                 <  2:1084018/91‑1 (MQ=255)

                                                                           aaaTTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGca                <  2:2613457/91‑1 (MQ=255)

                                                                           aaaTTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTATAAAAAAGGAAGAACAGca                <  2:3757452/91‑1 (MQ=255)

                                                                               tataCTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACAtt            <  1:1762075/91‑1 (MQ=255)

                                                                                ataCTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAACACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACAttt           >  1:3087960/1‑91 (MQ=255)

                                                                                ataCTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACAttt           >  1:2899912/1‑91 (MQ=255)

                                                                                ataCTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACAttt           >  1:7906/1‑91 (MQ=255)

                                                                                ataCTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACAttt           <  2:2309711/91‑1 (MQ=255)

                                                                                 taCTGTGACtcggggaatactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtcgctttataacttcacgtgc          <  1:1422363‑M2/91‑83 (MQ=255)

                                                                                  aCTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACAttttt         >  2:1672467/1‑91 (MQ=255)

                                                                                   cTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTtta        >  1:995497/1‑91 (MQ=255)

                                                                                   cTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTtta        <  2:3215048/91‑1 (MQ=255)

                                                                                     gtgACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTttagt      >  1:1978815/1‑91 (MQ=255)

                                                                                       gACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTttagtta    >  2:1605622/1‑91 (MQ=255)

                                                                                        aCTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTttagttag   <  2:1848771/91‑1 (MQ=255)

AAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGA  >  USA300TCH1516_ALE/1438958‑1439137

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.