BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1507967 =	183 (0.960)	25 (0.160)	15/128	NT	17.2%	intergenic (‑392/+83)	ald1/ypcP	Alanine dehydrogenase 1/5'‑3' exonuclease
*	?	USA300TCH1516_ALE	1508010 =	95 (0.630)	25 (0.160)	15/128	NT	17.2%	intergenic (‑435/+40)	ald1/ypcP	Alanine dehydrogenase 1/5'‑3' exonuclease

Only 100 of 252 total aligned reads displayed.

TATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCATGTTCGTT  >  USA300TCH1516_ALE/1507921‑1508100

tatcAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTtat                                                                                            <  2:1354772/91‑1 (MQ=255)

tatcAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTtat                                                                                            >  2:1176515/1‑91 (MQ=255)

 atcAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGTAAAAAGACTATTTCTACCTTGTGTCGATAGAAATAGTCTTTTtata                                                                                           <  1:3071272/91‑1 (MQ=255)

  ttaaaaagtataagattttatgaaaaattaaaccaattaagtatAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATAc                                                                                          >  1:2163100‑M1/45‑91 (MQ=255)

   cAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACt                                                                                         <  1:2402836/91‑1 (MQ=255)

     aaaTTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTa                                                                                       >  1:499539/1‑91 (MQ=255)

      aaTTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTaa                                                                                      >  2:844781/1‑91 (MQ=255)

       aTTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAAt                                                                                     <  1:3341986/91‑1 (MQ=255)

         tCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTg                                                                                   >  2:1373949/1‑91 (MQ=255)

          cGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTgg                                                                                  <  2:2194756/91‑1 (MQ=255)

          cGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTgg                                                                                  >  2:290351/1‑91 (MQ=255)

           ggCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGt                                                                                 <  1:3543199/91‑1 (MQ=255)

           ggCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGt                                                                                 <  2:2376194/91‑1 (MQ=255)

             cTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGttt                                                                               >  1:432610/1‑91 (MQ=255)

             cTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGttt                                                                               <  2:3669995/91‑1 (MQ=255)

                   tattCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAAtttt                                                                         <  2:1489376/91‑1 (MQ=255)

                    attCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAAttttt                                                                        <  2:941787/91‑1 (MQ=255)

                    attCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTATATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAAttttt                                                                        >  2:3475514/1‑91 (MQ=255)

                      tCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCa                                                                      <  1:293181/91‑1 (MQ=255)

                      tCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCa                                                                      <  1:2774131/91‑1 (MQ=255)

                       gtctctGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCAt                                                                     <  2:1580418/89‑1 (MQ=255)

                          tctGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATaaa                                                                  >  2:525175/1‑91 (MQ=255)

                             gACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATc                                                               <  2:3885610/91‑1 (MQ=255)

                             gACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATc                                                               >  1:1906607/1‑91 (MQ=255)

                              aCATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCt                                                              >  2:1710008/1‑91 (MQ=255)

                              aCATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCt                                                              >  2:3678605/1‑91 (MQ=255)

                              aCATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCt                                                              >  1:3025486/1‑91 (MQ=255)

                                atatCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTta                                                            >  1:1608406/1‑91 (MQ=255)

                                 tatCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTtat                                                           <  1:2012879/91‑1 (MQ=255)

                                  atCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTtata                                                          <  1:1369443/91‑1 (MQ=255)

                                      aaaTACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑ttt                                                     <  1:841649/91‑1 (MQ=255)

                                       aaTACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑tttt                                                    <  1:1228361/91‑1 (MQ=255)

                                       aaTACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑tttt                                                    <  1:2224924/91‑1 (MQ=255)

                                         tACGCAAAAAGACAATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTa                                                  <  2:3307803/91‑1 (MQ=255)

                                         agtataaaaagactatttctatcgatacaaggtagaaatagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTa                                                  >  1:1386366‑M2/49‑91 (MQ=255)

                                           cGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTaaa                                                >  1:1608292/1‑91 (MQ=255)

                                           cGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTaaa                                                <  1:576418/91‑1 (MQ=255)

                                            gCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTaaaa                                               >  1:1298426/1‑91 (MQ=255)

                                            gCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTaaaa                                               >  2:2280585/1‑91 (MQ=255)

                                            ataaaaagactatttctatcgatacaaggtagaaatagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTaaaa                                               >  1:941032‑M2/46‑91 (MQ=255)

                                              AAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAAt                                             <  2:3173981‑M1/91‑1 (MQ=255)

                                              AAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAAt                                             >  1:3686666‑M1/1‑91 (MQ=255)

                                               AAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCa                                                                      >  1:1106616‑M1/1‑66 (MQ=255)

                                               AAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATg                                            <  1:3229363‑M1/91‑1 (MQ=255)

                                                AAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATgg                                           <  2:2354411‑M1/91‑1 (MQ=255)

                                                AAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATgg                                           >  1:3447297‑M1/1‑91 (MQ=255)

                                                AAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATgg                                           <  1:1662707‑M1/91‑1 (MQ=255)

                                                  agattatttctatcgatccaaggtagaaatagtcttcttATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAAtgggg                                         >  2:3442692‑M2/40‑90 (MQ=255)

                                                  AGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGa                                         >  1:3419489‑M1/1‑91 (MQ=255)

                                                   gactatttctatcgatacaaggtagaaatagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGAt                                        >  2:1967121‑M2/39‑91 (MQ=255)

                                                     ctatttctatcgatacaaggtagaaatagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGa                                      >  2:2395464‑M2/37‑91 (MQ=255)

                                                     CTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTACAC‑TTTTTAAAAATGGGATGa                                      <  1:2533730‑M1/91‑1 (MQ=255)

                                                      TATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGaa                                     <  1:894141‑M1/91‑1 (MQ=255)

                                                       ttttctatcgattcaaggtagaaatagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGaaa                                    <  2:1066315‑M2/57‑1 (MQ=255)

                                                       ATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGaaa                                    >  2:3617574‑M1/1‑91 (MQ=255)

                                                       ATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGaaa                                    >  2:2470582‑M1/1‑91 (MQ=255)

                                                       ATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGaaa                                    <  2:730291‑M1/91‑1 (MQ=255)

                                                       ATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGaaa                                    >  2:201296‑M1/1‑91 (MQ=255)

                                                       ATTTCTACCTTGTATCGATAGAAATAGTCTTTATATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGaaa                                    <  2:3804446‑M1/91‑1 (MQ=255)

                                                        TTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAat                                   >  2:1447236‑M1/1‑91 (MQ=255)

                                                         TTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAata                                  >  1:2186570‑M1/1‑91 (MQ=255)

                                                           ctatcgatacaaggtagaaatagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAatata                                >  1:2221646‑M2/31‑91 (MQ=255)

                                                           ctatcgatacaaggtagaaatagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAatata                                >  1:1008606‑M2/31‑91 (MQ=255)

                                                           CTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAatata                                >  2:1568478‑M1/1‑91 (MQ=255)

                                                            TACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAatatat                               <  1:1366666‑M1/91‑1 (MQ=255)

                                                             atcgatacaaggtagaaatagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAATATAtt                              >  2:3093578‑M2/29‑91 (MQ=255)

                                                             ACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAATATAtt                              <  2:2227599‑M1/91‑1 (MQ=255)

                                                             ACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAATATAtt                              <  1:2836498‑M1/91‑1 (MQ=255)

                                                                ttGTATCGATAGAAATAGTCTTTCTATACTTAATTGGTTTAATTTTTCATAAAATCTTAGAC‑TTTTTAAAAATGGGATGAAATATATTTTc                           <  2:2965045/91‑1 (MQ=255)

                                                                  gTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAATATATTTTCCt                         >  1:2271082/1‑91 (MQ=255)

                                                                  gTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAATATATTTTCCt                         <  1:3523397/91‑1 (MQ=255)

                                                                  gTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAATATATTTTCCt                         >  1:1408789/1‑91 (MQ=255)

                                                                    aTCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAATATATTTTCCTGa                       >  1:1337010/1‑91 (MQ=255)

                                                                     tCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAAt                                             <  1:988262/68‑1 (MQ=255)

                                                                       gATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAATATATTTTCCTGAAAc                    >  2:2139846/1‑91 (MQ=255)

                                                                       gATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAATATATTTTCCTGAAAc                    <  1:2730913/91‑1 (MQ=255)

                                                                       gATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAATATATTTTCCTGAAAc                    >  1:2882199/1‑91 (MQ=255)

                                                                        aTAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑ATATAAAAAATGGGATGAAATATATTTTCCTGAAACa                   <  2:2985324/91‑1 (MQ=255)

                                                                         tagaaatagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAATATATTTTCCTGAAACAt                  >  2:2570284‑M2/17‑91 (MQ=255)

                                                                         tagaaatagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAATATATTTTCCTGAAACAt                  >  1:2036688‑M2/17‑91 (MQ=255)

                                                                             aatagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTaa              >  2:3304624‑M2/13‑91 (MQ=255)

                                                                             aatagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTaa              >  2:1108575‑M2/13‑91 (MQ=255)

                                                                             aatagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTaa              <  1:1344424‑M2/79‑1 (MQ=255)

                                                                              atagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAAt             <  1:678722‑M2/80‑1 (MQ=255)

                                                                              atagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAAt             >  2:596762‑M2/12‑91 (MQ=255)

                                                                                agtctttttATACTTAATTGGTTTAATTTTTCTTATTATCTTATAC‑TTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTc           >  2:1855463‑M2/10‑91 (MQ=255)

                                                                                agtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTc           >  2:1851269‑M2/10‑91 (MQ=255)

                                                                                agtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTc           <  2:3191652‑M2/82‑1 (MQ=255)

                                                                                agtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTc           >  2:2546989‑M2/10‑91 (MQ=255)

                                                                                  tctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCAt         <  1:1637503‑M2/84‑1 (MQ=255)

                                                                                  tctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCAt         <  2:2782011‑M2/84‑1 (MQ=255)

                                                                                    tttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCATGt       <  2:2342472‑M2/86‑1 (MQ=255)

                                                                                     ttttATACTTAATTGGTTTAATTTTTCATAAAATTTTATACTTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCATGt       <  1:377312‑M2/87‑1 (MQ=255)

                                                                                     ttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCATGtt      >  1:186925‑M2/5‑91 (MQ=255)

                                                                                      tttATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCATGTTc     >  2:3395197‑M2/4‑91 (MQ=255)

                                                                                      tttATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCATGTTc     <  1:2280585‑M2/88‑1 (MQ=255)

                                                                                       ttATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCATGTTCg    <  2:3522418‑M2/89‑1 (MQ=255)

                                                                                        tATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCATGTTCGt   <  1:2267838‑M2/90‑1 (MQ=255)

                                                                                        tATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCATGTTCGt   <  2:174431‑M2/90‑1 (MQ=255)

                                                                                         ataCTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCATGTTCGtt  <  1:290351/91‑1 (MQ=255)

TATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAC‑TTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCATGTTCGTT  >  USA300TCH1516_ALE/1507921‑1508100

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.