New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 1647574 =198 (1.040)24 (0.140) 13/148 NT 11.5% intergenic (+4/+60) USA300HOU_RS08180/lipM hypothetical protein/Octanoyltransferase LipM
?USA300TCH1516_ALE 1647624 = 188 (1.070)intergenic (+54/+10) USA300HOU_RS08180/lipM hypothetical protein/Octanoyltransferase LipM

Only 100 of 268 total aligned reads displayed.

ATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAATTC  >  USA300TCH1516_ALE/1647535‑1647714
                                                                                          |                                                                                          
gttcagatgaatggatgtttagaaagtagtttttagaatAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTAt                                                                                           >  2:3056234‑M1/40‑91 (MQ=255)
 ttcagatgaatggatgtttagaaagtagtttttagaatAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTAt                                                                                           >  1:2607147‑M1/39‑91 (MQ=255)
 ttcagatgaatggatgtttagaaagtagtttttagaatAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTAt                                                                                           >  1:2241679‑M1/39‑91 (MQ=255)
 tGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTAtt                                                                                          >  2:2520159/1‑91 (MQ=255)
 tGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTAtt                                                                                          >  2:1103587/1‑91 (MQ=255)
  gCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTc                                                                                         <  2:2158130/91‑1 (MQ=255)
  gCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTc                                                                                         >  2:1729816/1‑91 (MQ=255)
  gCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTc                                                                                         >  1:2579766/1‑91 (MQ=255)
   cGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCt                                                                                        >  2:1486888/1‑91 (MQ=255)
       aGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTaaaa                                                                                    <  1:1183688/91‑1 (MQ=255)
       aGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTaaaa                                                                                    <  1:1862021/91‑1 (MQ=255)
           taAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAacta                                                                                <  1:2418464/91‑1 (MQ=255)
            aaaaGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAactac                                                                               >  2:1700205/1‑91 (MQ=255)
             aaaGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAactact                                                                              >  2:783934/1‑91 (MQ=255)
               aGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACttt                                                                            >  1:2099504/1‑91 (MQ=255)
               aGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACttt                                                                            <  1:3855201/91‑1 (MQ=255)
                 aaaTCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCt                                                                          >  2:46569/1‑91 (MQ=255)
                   aTCAAAGAAGAAAATAGATAAAAAAA‑CGG‑AGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTaaa                                                                       >  2:279868/1‑91 (MQ=255)
                    tCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTaaa                                                                       >  1:1780433/1‑91 (MQ=255)
                    tCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTaaa                                                                       <  2:192612/91‑1 (MQ=255)
                    tCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTaaa                                                                       >  1:2817581/1‑91 (MQ=255)
                    tCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCAATTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTaaa                                                                       >  2:140035/1‑91 (MQ=255)
                     cAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAAc                                                                      >  1:911646/1‑91 (MQ=255)
                     cAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAAc                                                                      >  1:1909355/1‑91 (MQ=255)
                     cAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAAc                                                                      >  1:3743634/1‑91 (MQ=255)
                       aagaagAAAATAGATACAAAAA‑CGGAACCACTCGTAGGTAAAATAGTCTACGTGCTCCCACTTTTTATTCTAAAAACTACTTTCTAAACAt                                                                    >  2:3805504/1‑91 (MQ=255)
                       aagaagAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACAt                                                                    >  2:3399143/1‑91 (MQ=255)
                       aagaagAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACAt                                                                    <  2:1786214/91‑1 (MQ=255)
                       aagaagAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACAt                                                                    >  1:1138126/1‑91 (MQ=255)
                        agaagaAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATc                                                                   >  2:220984/1‑91 (MQ=255)
                        agaagaAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATc                                                                   >  1:2378577/1‑91 (MQ=255)
                         gaagaaAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATcc                                                                  <  1:1733645/91‑1 (MQ=255)
                         gaagaaAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATcc                                                                  >  1:3045855/1‑91 (MQ=255)
                         agtagtttttagaataaaaaatggaagcacgtagactattttacctacaagtgcttccgttttttATTCTAAAAACTACTTTCTAAACATc                                                                   >  1:3337535‑M2/66‑91 (MQ=255)
                            gaaAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCAtt                                                               >  1:340261/1‑91 (MQ=255)
                            gaaAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCAtt                                                               <  1:2263551/91‑1 (MQ=255)
                            gaaAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCAtt                                                               >  2:706869/1‑91 (MQ=255)
                            gaaAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCAtt                                                               >  2:652137/1‑91 (MQ=255)
                               aaTAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCAt                                                            >  2:1061502/1‑91 (MQ=255)
                               aaTAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCAt                                                            >  2:589177/1‑91 (MQ=255)
                                 tAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCt                                                          >  2:1931384/1‑91 (MQ=255)
                                  aGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTg                                                         >  1:28233/1‑91 (MQ=255)
                                   gATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGa                                                        >  1:3088903/1‑91 (MQ=255)
                                    aTAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGaa                                                       <  1:1028776/91‑1 (MQ=255)
                                     tAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAAc                                                      >  2:3153177/1‑91 (MQ=255)
                                     tAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAAc                                                      <  1:2033552/91‑1 (MQ=255)
                                     tAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAAc                                                      <  1:2513572/91‑1 (MQ=255)
                                     tAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAAc                                                      <  2:371805/91‑1 (MQ=255)
                                      aaaaaaa‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACg                                                     >  2:860106/1‑91 (MQ=255)
                                       taaaaaatggaagcacgtagactattttacctacaagtgcttccgttttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACg                                                     >  1:3518716‑M2/52‑91 (MQ=255)
                                       AAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGa                                                    <  1:1252273‑M1/91‑1 (MQ=255)
                                       AAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGa                                                    >  1:1103587‑M1/1‑91 (MQ=255)
                                        AAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGat                                                   >  1:3578862‑M1/1‑91 (MQ=255)
                                          aaatggaagcacgtagactattttacctacaagtgcttccgtttttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGata                                                  >  2:1325872‑M2/49‑91 (MQ=255)
                                            aatggaagcacgtagactattttacctacaagtgcttccgttttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATAtt                                                >  2:1847844‑M2/47‑91 (MQ=255)
                                            A‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATAttt                                               >  2:3312423‑M1/1‑91 (MQ=255)
                                            A‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATAttt                                               <  1:3680017‑M1/91‑1 (MQ=255)
                                              tggaagcacgtagactattttacctacaagtgcttccgttttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATAtttt                                              >  1:3841578‑M2/45‑91 (MQ=255)
                                              tggaagcacgtagactattttacctacaagtgcttccgttttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATAtttt                                              >  1:3407289‑M2/45‑91 (MQ=255)
                                              cGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATAtttt                                              >  1:2757032/1‑91 (MQ=255)
                                                gaagcacgtagactattttacctacaagtgcttccgttttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTc                                            >  1:268093‑M2/43‑91 (MQ=255)
                                                gAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTc                                            >  2:927656/1‑91 (MQ=255)
                                                gAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTc                                            >  1:3180983/1‑91 (MQ=255)
                                                  agcacgtagactattttacctacaagtgcttccgttttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAg                                          >  2:2563899‑M2/41‑91 (MQ=255)
                                                  aGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATAtttttttt                                          >  2:3883530/1‑88 (MQ=255)
                                                  aGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAg                                          >  2:158358/1‑91 (MQ=255)
                                                  aGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAg                                          >  2:2053385/1‑91 (MQ=255)
                                                  aGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAg                                          >  2:1365069/1‑91 (MQ=255)
                                                  aGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAg                                          >  1:2300899/1‑91 (MQ=255)
                                                   gCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGt                                         <  2:3064478/91‑1 (MQ=255)
                                                   gCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGt                                         <  2:2737189/91‑1 (MQ=255)
                                                    cACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGtt                                        >  2:2295194/1‑91 (MQ=255)
                                                      cTTGTAGGTAAAATAGACTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTaa                                      <  2:2924340/91‑1 (MQ=255)
                                                        tGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAAtt                                    <  2:2014231/91‑1 (MQ=255)
                                                         gTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAAttc                                   >  1:1545574/1‑91 (MQ=255)
                                                         agaccattttacctacaagtgcttccattttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAAttc                                   >  1:2322974‑M2/34‑91 (MQ=255)
                                                          tAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAAttct                                  <  1:79977/91‑1 (MQ=255)
                                                          tAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAAttct                                  >  2:693800/1‑91 (MQ=255)
                                                           aGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAAttctt                                 <  1:1602318/91‑1 (MQ=255)
                                                           aGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATACATCTGAACGATATTTTTCAGTTAAttctt                                 <  2:2021923/91‑1 (MQ=255)
                                                               aaaaTAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCAc                             >  1:3315290/1‑91 (MQ=255)
                                                               aaaaTAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCAc                             >  2:3334277/1‑91 (MQ=255)
                                                                aaaTAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACt                            <  2:322845/91‑1 (MQ=255)
                                                                 aaTAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACtt                           >  2:1169926/1‑91 (MQ=255)
                                                                 aaTAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACtt                           <  2:2416623/91‑1 (MQ=255)
                                                                 aaTAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACtt                           <  2:2139525/91‑1 (MQ=255)
                                                                   tAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCGTTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCt                         <  2:3599571/91‑1 (MQ=255)
                                                                   tAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCt                         <  2:1649320/91‑1 (MQ=255)
                                                                    aGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTg                        <  2:2026227/91‑1 (MQ=255)
                                                                      tCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTTATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGcc                      <  2:3189496/91‑1 (MQ=255)
                                                                          cGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAAtt                  <  1:699717/91‑1 (MQ=255)
                                                                           gTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTg                 <  2:3506787/91‑1 (MQ=255)
                                                                           gTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTg                 <  1:550147/91‑1 (MQ=255)
                                                                           gTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTg                 <  2:2616595/91‑1 (MQ=255)
                                                                              cTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGc              <  1:3798604/91‑1 (MQ=255)
                                                                               ttCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCt             <  2:3558900/91‑1 (MQ=255)
                                                                                 ccATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTc           <  2:2303955/91‑1 (MQ=255)
                                                                                   tttttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTg         >  1:1268021‑M2/8‑91 (MQ=255)
                                                                                      ttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTa      >  1:2902466‑M2/5‑91 (MQ=255)
                                                                                        ttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAAt    <  2:2867370‑M2/89‑1 (MQ=255)
                                                                                          |                                                                                          
ATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAATTC  >  USA300TCH1516_ALE/1647535‑1647714

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.