BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1660749 =	221 (1.160)	12 (0.070)	11/142	NT	6.2%	coding (560/1464 nt)	gluP	Rhomboid protease GluP
*	?	USA300TCH1516_ALE	1660775 =	166 (0.980)	12 (0.070)	11/142	NT	6.2%	coding (534/1464 nt)	gluP	Rhomboid protease GluP

Only 100 of 273 total aligned reads displayed.

CGATGTAACAATTCGATACCATTCACCATGTACGACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTGCCGGTGAAAATTTCTGCATATATTTATCTAAA  >  USA300TCH1516_ALE/1660685‑1660865

cGATGTAACAATTCGATACCATTCACCATGTACGACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTAttt                                                                                            >  1:1721853/1‑91 (MQ=255)

 gATGTAATAATTCGATACCATTCACCATGTACGACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTa                                                                                           <  1:1933826/91‑1 (MQ=255)

 gATGTAACAATTCGATACCATTCACCATGTACGACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTa                                                                                           <  1:2830470/91‑1 (MQ=255)

 gATGTAACAATTCGATACCATTCACCATGTACGACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTa                                                                                           >  1:2146131/1‑91 (MQ=255)

   tGTAACAATTCGATACCATTCACCATGTACGACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTaaa                                                                                         <  2:2298379/91‑1 (MQ=255)

   tGTAACAATTCGATACCATTCACCATGTACGACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTaaa                                                                                         >  2:1736564/1‑91 (MQ=255)

   ggcaacatacacaataatatttgtaaatgtcttaatatggttatgtatgattttatatttaAATAATTTTACATCCGAAAAATTATTTaaa                                                                                         >  2:47301‑M1/62‑91 (MQ=255)

    gTAACAATTCGATACCATTCACCATGTACGACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAat                                                                                        <  2:1061653/91‑1 (MQ=255)

      aaCAATTCGATACCATTCACCATGTACGACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAatat                                                                                      <  1:3798368/91‑1 (MQ=255)

       aCAATTCGATACCATTCACCATGTACGACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAAtata                                                                                     >  2:498812/1‑91 (MQ=255)

           ttCGATACCATTCACCATGTACGACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAAt                                                                                 <  1:3586819/91‑1 (MQ=255)

            tCGATACCATTCACCATGTACGACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACAGCCGAAAAATTATTTAAATATAAAATc                                                                                <  2:2219955/91‑1 (MQ=255)

             cGATACCATTCACCATGTACGACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATca                                                                               <  2:1363973/91‑1 (MQ=255)

               tatattttttgtaaatgtcttaatattgttatgtatgattttatatttaAATAATTTTACATCCGAAAAATTATTTAAATATAAAATcata                                                                             >  2:2304905‑M1/50‑91 (MQ=255)

               aTACCATTCACCATGTACGACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATcata                                                                             >  1:1971807/1‑91 (MQ=255)

                tACCATTCACCATGTACGACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATcatac                                                                            >  2:2622103/1‑91 (MQ=255)

                 aCCATTCACCATGTACGACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATcataca                                                                           >  1:1266976/1‑91 (MQ=255)

                  ccATTCACCATGTACGACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATcatacat                                                                          >  1:1759758/1‑91 (MQ=255)

                  ccATTCACCATGTACGACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATcatacat                                                                          >  2:1326316/1‑91 (MQ=255)

                  ccATTCACCATGTACGACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATcatacat                                                                          <  1:2637691/91‑1 (MQ=255)

                   cATTCACCATGTACGACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATcatacata                                                                         <  2:3165385/91‑1 (MQ=255)

                   cATTCACCATGTACGACATTAAAATGCACTAACCCGCCAACATCTAATAATTATACAAACGAAAAATTATTTAAATATAAAATcatacata                                                                         <  2:345487/91‑1 (MQ=255)

                     ttCACCATTTACGACATTAAAATGCACTAACCCGCCAACATCTTATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAAc                                                                       <  2:2829487/91‑1 (MQ=255)

                     atttgtaaatgtcttaatatggttatgtatgattttatatttaaataattttacatccgaaaaattattTAAATATAAAATCATACATAAc                                                                       <  2:3693531‑M2/22‑1 (MQ=255)

                       cACCATGTACGACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCa                                                                     <  2:3034821/91‑1 (MQ=255)

                           aTGTACGACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATAtt                                                                 <  1:3465542/91‑1 (MQ=255)

                           aTGTACGACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATAtt                                                                 <  2:2650073/91‑1 (MQ=255)

                            tGTACGACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTa                                                                >  2:957598/1‑91 (MQ=255)

                            tGTACGACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTa                                                                >  2:2890427/1‑91 (MQ=255)

                            tGTACGACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTa                                                                >  2:2326254/1‑91 (MQ=255)

                             gTACGACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTaa                                                               >  2:3883666/1‑91 (MQ=255)

                             gTACGACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTaa                                                               >  1:3552468/1‑91 (MQ=255)

                             gTACGACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTaa                                                               >  2:2042367/1‑91 (MQ=255)

                              tACGACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAg                                                              >  1:319058/1‑91 (MQ=255)

                                cGACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATcat                                                                              >  2:3824075/1‑73 (MQ=255)

                                cGACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGAc                                                            <  1:3392557/91‑1 (MQ=255)

                                cGACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGAc                                                            <  2:3738891/91‑1 (MQ=255)

                                 gACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACa                                                           >  1:745637/1‑91 (MQ=255)

                                 gACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTAAAATATAAAATCATACATAACCATATTAAGACa                                                           >  1:3440472/1‑91 (MQ=255)

                                 cttaatatggttatgtatgattttatatttaaataattttacatccgaaaaattattTAAATATAAAATCATACATAACCATATTAAGACa                                                           <  1:2889855‑M2/34‑1 (MQ=255)

                                  aCATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAAtata                                                                                     >  2:554955/1‑64 (MQ=255)

                                     ttAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTa                                                       >  1:2958602/1‑91 (MQ=255)

                                     ttAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTa                                                       >  1:497248/1‑91 (MQ=255)

                                      tAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTAc                                                      >  2:3563185/1‑91 (MQ=255)

                                       aaaaTGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACa                                                     <  1:1739700/91‑1 (MQ=255)

                                        aaaTGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACaa                                                    >  1:415892/1‑91 (MQ=255)

                                        aaaTGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACaa                                                    >  1:2408835/1‑91 (MQ=255)

                                        aaaTGCACTAACCCGCCAACATCTAATAATTTTACATCCAAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACaa                                                    >  2:2188646/1‑91 (MQ=255)

                                         aaTGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTTAGACATTTACaaa                                                   >  2:1642845/1‑91 (MQ=255)

                                         aaTGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACaaa                                                   <  2:1721853/91‑1 (MQ=255)

                                          aTGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAat                                                  <  2:368248/91‑1 (MQ=255)

                                          aTGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAat                                                  <  1:3355994/91‑1 (MQ=255)

                                           tGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAata                                                 >  2:2374588/1‑91 (MQ=255)

                                                 aaCCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATtg                                           >  1:959576/1‑91 (MQ=255)

                                                 aaCCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATtg                                           <  1:3200680/91‑1 (MQ=255)

                                                  aCCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATtgt                                          >  1:1440358/1‑91 (MQ=255)

                                                  aCCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATtgt                                          <  2:2452640/91‑1 (MQ=255)

                                                  aCCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATtgt                                          <  2:1981171/91‑1 (MQ=255)

                                                   cccGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATtgtg                                         <  2:1167058/91‑1 (MQ=255)

                                                      tttatatttaAATAATTTTTCGGATGTAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTAt                                      <  1:869426‑M1/81‑1 (MQ=255)

                                                      gCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTAt                                      <  2:877500/91‑1 (MQ=255)

                                                       ccAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATg                                     >  1:580431/1‑91 (MQ=255)

                                                        tatatttaAATAATTTTTCGGATGTAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGt                                    <  1:2572808‑M1/83‑1 (MQ=255)

                                                          aCATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTg                                  >  1:1004221/1‑91 (MQ=255)

                                                          aCATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTg                                  >  2:1977155/1‑91 (MQ=255)

                                                           cATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACGCTTACAAATATTATTGTGTATGTTGc                                 >  2:3360837/1‑91 (MQ=255)

                                                           atttaaataatttttcggatgtaaaattattTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTGc                                 >  1:3044700‑M2/32‑91 (MQ=255)

                                                             tCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACa                                                     >  1:101665/1‑69 (MQ=255)

                                                             tCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTGCCg                               >  1:1299017/1‑91 (MQ=255)

                                                               taataaTTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTGCCGGt                             <  1:2046649/91‑1 (MQ=255)

                                                                AATAATTTTACCTCCGAAAAATTCTTTAAATATAAAATCATACATAACCATATTAAGACGTTTACAAATATTATTGTGTATGTTGCCGGTg                            >  2:2957622‑M1/1‑91 (MQ=255)

                                                                AATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTGCCGGTg                            >  1:3766184‑M1/1‑91 (MQ=255)

                                                                AATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTGCCGGTg                            >  1:32424‑M1/1‑91 (MQ=255)

                                                                AATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTGCCGGTg                            >  2:1866209‑M1/1‑91 (MQ=255)

                                                                 ATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTGCCGGTg                            <  1:2431787‑M1/90‑1 (MQ=255)

                                                                  TAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTGCCGGTGaa                          >  1:1230621‑M1/1‑91 (MQ=255)

                                                                  TAATATTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTGCCGGTGaa                          >  1:1098431‑M1/1‑91 (MQ=255)

                                                                   AATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTGCCGGTGaaa                         >  2:1982100‑M1/1‑91 (MQ=255)

                                                                    ATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTGCCGGTGaaaa                        >  1:2326254‑M1/1‑91 (MQ=255)

                                                                     TTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTGCCGGTGAAAAt                       <  2:896526‑M1/91‑1 (MQ=255)

                                                                         aCATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTGCCGGTGAAAATTTCt                   >  1:3096953/1‑91 (MQ=255)

                                                                         aCATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTGCCGGTGAAAATTTCt                   <  2:651809/91‑1 (MQ=255)

                                                                         aCATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTGCCGGTGAAAATTTCt                   >  1:1639926/1‑91 (MQ=255)

                                                                          cggatgtaaaattattTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTGCCGGTGAAAATTTCTg                  >  2:3260049‑M2/17‑91 (MQ=255)

                                                                          cATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTGCCGGTGAAAATTTCTg                  >  1:727951/1‑91 (MQ=255)

                                                                          cATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTGCCGGTGAAAATTTCTg                  <  1:3001102/91‑1 (MQ=255)

                                                                            tCCGAAAAATTATTTAAATATACAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTGCCGGTGAAAATTTCTGCa                <  1:2019298/91‑1 (MQ=255)

                                                                            tCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTGCCGGTGAAAATTTCTGCa                <  1:926134/91‑1 (MQ=255)

                                                                            tCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTGCCGGTGAAAATTTCTGCa                <  1:988603/91‑1 (MQ=255)

                                                                                aaaaaTTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTGCCGGTGAAAATTTCTGCatata            <  2:1235299/91‑1 (MQ=255)

                                                                                 aaaattattTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTGCCGGTGAAAATTTCTGCatatat           <  2:272503‑M2/82‑1 (MQ=255)

                                                                                   aattattTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTGCCGGTGAAAATTTCTGCATATAttt         <  1:610680‑M2/84‑1 (MQ=255)

                                                                                    attattTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTGCCGGTGAAAATTTCTGCATATATTTa        >  2:725537‑M2/7‑91 (MQ=255)

                                                                                     ttattTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATACTATTGTGTATGTTGCCGGTGAAAATTTCTGCATATATTTAt       >  2:2653981‑M2/6‑91 (MQ=255)

                                                                                      tattTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTGCCGGTGAAAATTTCTGCATATATTTATc      <  1:372407‑M2/87‑1 (MQ=255)

                                                                                      tattTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTGCCGGTGAAAATTTCTGCATATATTTATc      <  2:2146131‑M2/87‑1 (MQ=255)

                                                                                        ttTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTGCCGGTGAAAATTTCTGCATATATTTATCTa    >  1:2685359‑M2/3‑91 (MQ=255)

                                                                                        ttTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTGCCGGTGAAAATTTCTGCATATATTTATCTa    >  1:1067079‑M2/3‑91 (MQ=255)

                                                                                         tTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTGCCGGTGAAAATTTCTGCATATATTTATCTaa   <  1:1186122‑M2/90‑1 (MQ=255)

                                                                                         tTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTGCCGGTGAAAATTTCTGCATATATTTATCTaa   >  2:1039850‑M2/2‑91 (MQ=255)

CGATGTAACAATTCGATACCATTCACCATGTACGACATTAAAATGCACTAACCCGCCAACATCTAATAATTTTACATCCGAAAAATTATTTAAATATAAAATCATACATAACCATATTAAGACATTTACAAATATTATTGTGTATGTTGCCGGTGAAAATTTCTGCATATATTTATCTAAA  >  USA300TCH1516_ALE/1660685‑1660865

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.