| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1665337 = | 78 (0.410) | 17 (0.130) | 14/108 | NT | 24.2% | intergenic (‑212/+65) | sodA/zur | Superoxide dismutase [Mn] 1/Zinc‑specific metallo‑regulatory protein |
| ? | USA300TCH1516_ALE | 1665405 = | 54 (0.420) | coding (408/411 nt) | zur | Zinc‑specific metallo‑regulatory protein | |||||
Only 100 of 232 total aligned reads displayed.
TGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTATCTGATCTATTGG > USA300TCH1516_ALE/1665315‑1665494 | tgaaatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTaa > 2:297179/1‑91 (MQ=255) gaaatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAAt < 1:1256121/91‑1 (MQ=255) aaatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATc < 2:2780488/91‑1 (MQ=255) aatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCt < 1:2180735/91‑1 (MQ=255) atgaaCCTTTATCTTCTATAATATAACGAAATGAGATTTATGCATACTTCTGACCAATTGTGCATTAATCTCATTTCTTTATATTAATCtt < 2:2260092/91‑1 (MQ=38) atgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCtt < 2:1418578/91‑1 (MQ=255) gaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTgg < 2:2058652/91‑1 (MQ=255) aCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCa < 1:965942/91‑1 (MQ=255) ccTTTATCTTCTATTATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCaa > 2:2652914/1‑91 (MQ=255) ccTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCaa > 2:481031/1‑91 (MQ=255) ccTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCaa < 2:1633383/91‑1 (MQ=255) cTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTCTATTAATCTTGGCAAg > 2:3712375/1‑91 (MQ=255) cTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAg > 1:2084895/1‑91 (MQ=255) ttATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGAc > 1:2455369/1‑91 (MQ=255) tATCTTCTATAATATAATGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACt < 1:1573460/91‑1 (MQ=255) aTCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTc < 2:943232/91‑1 (MQ=255) tcttctATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTca < 2:1141849/91‑1 (MQ=255) cttctATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTcac > 1:1679136/1‑91 (MQ=255) ctATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATa > 1:848876/1‑91 (MQ=255) ctATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATa > 2:3400742/1‑91 (MQ=255) ctATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATa > 1:2667906/1‑91 (MQ=255) ctATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATa > 1:2667918/1‑91 (MQ=255) TATAAAGAAGTGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCAt > 1:3714407‑M1/1‑91 (MQ=255) TAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATaa > 2:769634‑M1/1‑91 (MQ=255) TAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATaa < 1:3744624‑M1/91‑1 (MQ=255) aaagaaatgagatttatgcacatttggtcagatgtatgcataaatctcatttctttatattaATCTTGGCAAGACTCACATACACCATaaa > 2:386201‑M2/63‑91 (MQ=255) AAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAAc < 2:1004648‑M1/91‑1 (MQ=255) AAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAAc < 2:1005299‑M1/91‑1 (MQ=255) AGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACt < 1:2256370‑M1/91‑1 (MQ=255) GAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACtt > 1:297179‑M1/1‑91 (MQ=255) GAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACtt > 2:2204328‑M1/1‑91 (MQ=255) AATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCa < 1:986321‑M1/91‑1 (MQ=255) tgagatttatgcacatttggtcagatgtatgcataaatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAg > 2:2499033‑M2/56‑91 (MQ=255) GAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCACAAACTTGAAgt > 1:2351100‑M1/1‑91 (MQ=255) AGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtt > 2:517989‑M1/1‑91 (MQ=255) AGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtt > 2:1679136‑M1/1‑91 (MQ=255) AGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtt > 1:3865640‑M1/1‑91 (MQ=255) AGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtt > 2:2091231‑M1/1‑91 (MQ=255) gatttatgcacatttggtcagatgtatgcataaatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAgttt > 2:392391‑M2/53‑91 (MQ=255) GATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgttt < 2:3102412‑M1/91‑1 (MQ=255) GATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgttt > 2:716685‑M1/1‑91 (MQ=255) ATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttg < 2:3429632‑M1/91‑1 (MQ=255) tttatgcacatttggtcagatgtatgcataaatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgt > 2:3483865‑M2/51‑91 (MQ=255) TTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtg < 1:3339393‑M1/91‑1 (MQ=255) tatgcacatttggtcagatgtatgcataaatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgt > 1:791637‑M2/49‑91 (MQ=255) ATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgtt < 1:2146900‑M1/91‑1 (MQ=255) ATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgtt < 1:2148465‑M1/91‑1 (MQ=255) TGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgttt > 1:750276‑M1/1‑91 (MQ=255) GCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgtttg < 1:604517‑M1/91‑1 (MQ=255) cacatttggtcagatgtatgcataaatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgtttgt > 2:2519634‑M2/45‑91 (MQ=255) CATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgtttgt < 1:312751‑M1/91‑1 (MQ=255) ATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGtttgtgtttgtg > 1:826118‑M1/1‑91 (MQ=255) ATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGtttgtgtttgtg < 1:176385‑M1/91‑1 (MQ=255) cATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAat < 1:2707742/91‑1 (MQ=255) tCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAatat < 2:664742/91‑1 (MQ=255) tGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTa < 2:131581/91‑1 (MQ=255) gACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTaa > 2:1194064/1‑91 (MQ=255) gACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTaa > 2:1072019/1‑91 (MQ=255) gACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTaa > 1:3798259/1‑91 (MQ=255) gACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTaa > 2:792036/1‑91 (MQ=255) cagatgtatgcataaatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAac > 2:3796619‑M2/35‑91 (MQ=255) aCCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAac > 1:1333394/1‑91 (MQ=255) aCCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAac > 1:3751980/1‑91 (MQ=255) aCCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAac < 1:2641318/91‑1 (MQ=255) cAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAacac > 1:1116958/1‑91 (MQ=255) aaaTGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACAcc < 1:719786/91‑1 (MQ=255) aaTGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCa > 2:2275966/1‑91 (MQ=255) aTGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAg < 1:2298129/91‑1 (MQ=255) tgcataaatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTa < 2:2332806‑M2/65‑1 (MQ=255) gcataaatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAg < 1:3512409‑M2/66‑1 (MQ=255) gcataaatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAg < 2:802825‑M2/66‑1 (MQ=255) cataaatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGt < 1:1800654‑M2/67‑1 (MQ=255) cataaatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGt < 1:1802083‑M2/67‑1 (MQ=255) taaatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGa < 1:1077218‑M2/69‑1 (MQ=255) aaatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGAt > 1:2842038‑M2/22‑91 (MQ=255) aatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATa < 1:238519‑M2/71‑1 (MQ=255) aatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACCTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATa < 1:572451‑M2/71‑1 (MQ=255) ctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAAtt < 1:2403734‑M2/74‑1 (MQ=255) catttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAAtttt > 2:2434507‑M2/16‑91 (MQ=255) atttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTa > 1:3680199‑M2/15‑91 (MQ=255) tttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTAt < 2:735715‑M2/78‑1 (MQ=255) ttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAAttt > 1:1008982‑M2/13‑87 (MQ=255) ttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTATc < 1:3495972‑M2/79‑1 (MQ=255) ttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTATc > 2:1601736‑M2/13‑91 (MQ=255) ttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTATc < 2:1809650‑M2/79‑1 (MQ=255) ttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTATc < 2:1836775‑M2/79‑1 (MQ=255) tctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTATCt < 1:2100477‑M2/80‑1 (MQ=255) tctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTATCt < 2:1902925‑M2/80‑1 (MQ=255) tctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTAAATATTAACACCAGGTAGTGATAATTTTATCt < 2:2052439‑M2/80‑1 (MQ=255) ctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTATCTg > 2:2016017‑M2/11‑91 (MQ=255) tttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTATCTGa < 1:145956‑M2/82‑1 (MQ=255) tttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTATCTGa < 1:1025060‑M2/82‑1 (MQ=255) ttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTAACTGAt > 1:3617484‑M2/9‑91 (MQ=255) tatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTATCTGATc > 2:124132‑M2/8‑91 (MQ=255) tatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTATCTGATc > 1:1227252‑M2/8‑91 (MQ=255) atattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTATCTGATCt > 1:1980747‑M2/7‑91 (MQ=255) tattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTATCTGATCTa < 2:1959562‑M2/86‑1 (MQ=255) tattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTATCTGATCTa < 2:604517‑M2/86‑1 (MQ=255) tattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTATCTGATCTa > 2:2896423‑M2/6‑91 (MQ=255) aTCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTATCTGATCTAt < 1:500551/87‑1 (MQ=255) | TGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTATCTGATCTATTGG > USA300TCH1516_ALE/1665315‑1665494 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |