BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1836934 =	131 (0.690)	31 (0.200)	12/132	NT	22.1%	intergenic (+18/+132)	serA/gph_2	D‑3‑phosphoglycerate dehydrogenase/Phosphoglycolate phosphatase
*	?	USA300TCH1516_ALE	1836982 =	111 (0.710)	31 (0.200)	12/132	NT	22.1%	intergenic (+66/+84)	serA/gph_2	D‑3‑phosphoglycerate dehydrogenase/Phosphoglycolate phosphatase

Only 100 of 221 total aligned reads displayed.

ACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTC‑AAACAACAATCAAATTACAAA  >  USA300TCH1516_ALE/1836893‑1837072

ccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCAtttttt                                                                                            >  1:547826‑M1/42‑91 (MQ=255)

  tGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCa                                                                                          <  2:404418/91‑1 (MQ=255)

   gAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCat                                                                                         <  1:1761664/91‑1 (MQ=255)

    aaTTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCatt                                                                                        >  1:1070204/1‑91 (MQ=255)

    aaTTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCatt                                                                                        >  1:1070853/1‑91 (MQ=255)

     aTTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCatta                                                                                       <  2:1991477/91‑1 (MQ=255)

       tGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattatt                                                                                     <  2:1771137/91‑1 (MQ=255)

       tGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattatt                                                                                     <  1:3429847/91‑1 (MQ=255)

        ttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCAttatta                                                                                    >  2:2812080‑M1/34‑91 (MQ=255)

        gACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCAttatta                                                                                    >  2:920876/1‑91 (MQ=255)

        gACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCAttatta                                                                                    <  1:669658/91‑1 (MQ=255)

         aCGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTaa                                                                                   <  2:1199837/91‑1 (MQ=255)

         aCGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTaa                                                                                   <  2:485644/91‑1 (MQ=255)

           ggTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAAtt                                                                                 >  1:1814389/1‑91 (MQ=255)

               cAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATAGCTTCTTGGCATTTTTTCATTATTAATTTCAt                                                                             >  2:1697079/1‑91 (MQ=255)

                aGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCAtt                                                                            <  2:2012737/91‑1 (MQ=255)

                aGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCAtt                                                                            <  1:1561151/91‑1 (MQ=255)

                 gTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTg                                                                           <  2:2652814/91‑1 (MQ=255)

                  tCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCAttttt                                                                                             <  1:1845728/72‑1 (MQ=255)

                  tCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGt                                                                          >  1:2215156/1‑91 (MQ=255)

                  tCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGt                                                                          >  2:162894/1‑91 (MQ=255)

                       aaCAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTc                                                                     >  2:1377153/1‑91 (MQ=255)

                        aCAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCa                                                                    <  2:3733299/91‑1 (MQ=255)

                          gaaattaataatgaaaaaatgccaagaagcaatggaagtaatccaatgtcttcttggcattttTTCATTATTAATTTCATTGTAACTCAat                                                                  >  2:2076522‑M2/64‑91 (MQ=255)

                           aTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAata                                                                 >  1:1491951/1‑91 (MQ=255)

                           aTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAata                                                                 >  2:331575/1‑91 (MQ=255)

                           aTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAata                                                                 >  1:261404/1‑91 (MQ=255)

                            tttATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAatat                                                                >  2:130489/1‑91 (MQ=255)

                            tttATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAatat                                                                <  1:1577110/91‑1 (MQ=255)

                            tttATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAatat                                                                >  2:1254428/1‑91 (MQ=255)

                            tttATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAatat                                                                <  1:75335/91‑1 (MQ=255)

                              tATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGa                                                              <  2:246175/91‑1 (MQ=255)

                               aTGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGaa                                                             >  2:2061750/1‑91 (MQ=255)

                               aTGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGaa                                                             <  1:1139958/91‑1 (MQ=255)

                               aTGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGaa                                                             <  1:56048/91‑1 (MQ=255)

                                tGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGaaa                                                            >  2:3091070/1‑91 (MQ=255)

                                tGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGaaa                                                            <  1:1720828/91‑1 (MQ=255)

                                   aatgaaaaaatgccaagaagcaatggaagtaatccaatgtcttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCt                                                         >  1:905115‑M2/55‑91 (MQ=255)

                                   aaaTTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCt                                                         >  2:3536844/1‑91 (MQ=255)

                                    aaTTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCtt                                                        >  1:2147621/1‑91 (MQ=255)

                                     aTTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCttt                                                       <  2:166426/91‑1 (MQ=255)

                                     aTTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCttt                                                       <  1:3319682/91‑1 (MQ=255)

                                       aaaaaatgccaagaagcaatggaagtaatccaatgtcttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTgg                                                     >  1:2642600‑M2/51‑91 (MQ=255)

                                        cAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGt                                                    <  2:530301/91‑1 (MQ=255)

                                        cAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGt                                                    <  1:102968/91‑1 (MQ=255)

                                        cAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGt                                                    >  1:1587628/1‑91 (MQ=255)

                                        cAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGt                                                    <  1:2798085/91‑1 (MQ=255)

                                        cAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCACTTTTTCCTTATTAATTTCATTGTAACTCAATATGAACCCATTGGt                                                    >  2:3499697/1‑91 (MQ=255)

                                          AAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTc                                                  >  1:2474191‑M1/1‑91 (MQ=255)

                                          AAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTc                                                  >  1:1602684‑M1/1‑91 (MQ=255)

                                          AAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTc                                                  <  2:3209546‑M1/91‑1 (MQ=255)

                                           aatgccaagaagcaatggaagtaatccaatgtcttcttggcattttTTCATTATTAATTTCATTGTTACTCAATATGAAACCTTTGGTTCa                                                 >  1:195693‑M2/47‑91 (MQ=255)

                                             TGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAAt                                               >  2:66776‑M1/1‑91 (MQ=255)

                                              GCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATc                                              <  1:1086710‑M1/91‑1 (MQ=255)

                                              GCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATc                                              <  1:2930682‑M1/91‑1 (MQ=255)

                                               CCAAGAATACATTGGATTACTTCCATTTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCa                                             >  2:1895480‑M1/1‑91 (MQ=255)

                                                 AAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCAtt                                           <  2:2609945‑M1/91‑1 (MQ=255)

                                                 AAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCAtt                                           <  1:2363272‑M1/91‑1 (MQ=255)

                                                  agaagcaatggaagtaatccaatgtcttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTc                                          >  2:1470744‑M2/40‑91 (MQ=255)

                                                     agcaatggaagtaatccaatgtcttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAACCATTCACt                                       >  1:2601887‑M2/37‑91 (MQ=255)

                                                     AGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACt                                       <  1:2258161‑M1/91‑1 (MQ=255)

                                                      gcaatggaagtaatccaatgtcttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTa                                      >  2:1588310‑M2/36‑91 (MQ=255)

                                                      gcaatggaagtaatccaatgtcttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTa                                      >  2:1167365‑M2/36‑91 (MQ=255)

                                                       caatggaagtaatccaatgtcttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTAc                                     >  1:3179134‑M2/35‑91 (MQ=255)

                                                       caatggaagtaatccaatgtcttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTAc                                     >  2:1561949‑M2/35‑91 (MQ=255)

                                                        cATTGGATTACTTCCATTGCTTCTTGGCATTTTTTTTTTTTTATTTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTTACTACa                                    >  2:2426372/1‑91 (MQ=255)

                                                        cATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACa                                    <  2:295864/91‑1 (MQ=255)

                                                        aatggaagtaatccaatgtcttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACa                                    >  2:1961667‑M2/34‑91 (MQ=255)

                                                         aTTGGATTACTCCCATTGCTTCTCGGCATTTTTTCTTTATTAATTTCATTATAACTCATTATGAAACCTTTGGTTCAATCATTCACTACaa                                   >  2:2154358/1‑91 (MQ=255)

                                                          ttGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAg                                  >  2:811531/1‑91 (MQ=255)

                                                           tGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGt                                                    <  1:2460717/72‑1 (MQ=255)

                                                           tGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGt                                 <  2:2780900/91‑1 (MQ=255)

                                                             gATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTa                               <  2:3370999/91‑1 (MQ=255)

                                                                tACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGc                            <  1:1229492/91‑1 (MQ=255)

                                                                tACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGc                            >  1:1388786/1‑91 (MQ=255)

                                                                 aCTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCt                           <  2:1491951/91‑1 (MQ=255)

                                                                  cTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTg                          >  2:1235191/1‑91 (MQ=255)

                                                                  cTTCCATTGCTGCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTg                          <  1:3511976/91‑1 (MQ=255)

                                                                      cATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTC‑aa                     <  2:3271271/91‑1 (MQ=255)

                                                                      cATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTC‑aa                     <  1:151783/91‑1 (MQ=255)

                                                                       aTTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTC‑aaa                    >  2:490594/1‑91 (MQ=255)

                                                                        ttGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTC‑Aaac                   <  1:209453/91‑1 (MQ=255)

                                                                          gCTTCTTGGCATTTTTTCTTTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTC‑Aaacaa                 >  2:3701962/1‑91 (MQ=255)

                                                                          gCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTC‑Aaacaa                 <  1:2812890/91‑1 (MQ=255)

                                                                           cttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTC‑Aaacaac                >  1:2287340‑M2/15‑91 (MQ=255)

                                                                           cttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTC‑Aaacaac                >  1:3590492‑M2/15‑91 (MQ=255)

                                                                           cttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTC‑Aaacaac                <  2:3525595‑M2/77‑1 (MQ=255)

                                                                            ttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTC‑AAacaaca               <  2:2129410‑M2/78‑1 (MQ=255)

                                                                              cttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTC‑AAACAACAAt             >  1:1478216‑M2/12‑91 (MQ=255)

                                                                               ttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTC‑AAACAACAATc            <  1:3623871‑M2/81‑1 (MQ=255)

                                                                                tggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTC‑AAACAACAATCa           >  2:714749‑M2/10‑91 (MQ=255)

                                                                                tggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTC‑AAACAACAATCa           >  2:885342‑M2/10‑91 (MQ=255)

                                                                                 ggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTC‑AAACAACAATCaa          <  1:2234925‑M2/83‑1 (MQ=255)

                                                                                    attttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAAACAACAATCAAAt        >  1:3229880‑M2/6‑91 (MQ=255)

                                                                                    attttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTC‑AAACAACAATCAAAtt       >  2:2660330‑M2/6‑91 (MQ=255)

                                                                                    attttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTAAATCATTCACTACAAGTTATGCTGTC‑AAACAACAATCAAAtt       <  2:2525696‑M2/86‑1 (MQ=255)

                                                                                     ttttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTC‑AAACAACAATCAAATTa      <  2:1997227‑M2/87‑1 (MQ=255)

                                                                                     ttttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGCTTCAATCATTCACTACAAGTTATGCTGTC‑AAACAACAATCAAATTa      <  1:3074873‑M2/87‑1 (MQ=255)

                                                                                      tttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTC‑AAACAACAATCAAATTAc     <  1:1890970‑M2/88‑1 (MQ=255)

                                                                                        tTTCATTATTAATTTCATTGTAACTCAATATGAAACCTGTGGTTCAATCATTCACTACAAGTTATGCTGTC‑AAACAACAATCAAATTACaa   <  1:593134‑M2/90‑1 (MQ=255)

ACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTC‑AAACAACAATCAAATTACAAA  >  USA300TCH1516_ALE/1836893‑1837072

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.