| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1980876 | 132 (0.690) | 17 (0.100) | 8/140 | NT | 13.7% | intergenic (‑118/+61) | USA300HOU_RS09865/USA300HOU_RS09870 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1980902 | 98 (0.590) | intergenic (‑144/+35) | USA300HOU_RS09865/USA300HOU_RS09870 | hypothetical protein/hypothetical protein | |||||
Only 100 of 209 total aligned reads displayed.
TTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTC > USA300TCH1516_ALE/1980812‑1980992 | aaatgctaaagaagaattagtacatatctaggcctatatacttttaataaataatAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTa > 2:1528565‑M1/56‑91 (MQ=255) ttAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTAca < 1:2525045‑M2/91‑3 (MQ=255) tgctaaagaagaattagtacatatctaggcctatatacttttaataaataatAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACAt > 2:399304‑M1/53‑91 (MQ=255) tAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTAcat < 1:2170451‑M2/91‑4 (MQ=255) aaTTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTAcatc > 2:2036090‑M2/1‑87 (MQ=255) aaTTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTAcatc < 1:2643566‑M2/91‑5 (MQ=255) aTTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTAcatcg > 1:1766356‑M2/1‑86 (MQ=255) aTTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTAcatcg > 2:2116578‑M2/1‑86 (MQ=255) ttCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTAcatcgc < 2:3221843‑M2/91‑7 (MQ=255) tCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTAcatcgct > 2:2532411‑M2/1‑84 (MQ=255) agaagaattagtacatatctaggcctatatacttttaataaataatAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCttt > 1:3428557‑M1/47‑91 (MQ=255) aTTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTAcatcgcttt > 2:3098370‑M2/1‑82 (MQ=255) ttAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTAcatcgctttt > 1:2689400‑M2/1‑81 (MQ=255) ttAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTAcatcgctttt < 2:1454424‑M2/91‑11 (MQ=255) ttAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTAcatcgctttt > 1:3864654‑M2/1‑81 (MQ=255) aTCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttatt > 2:787461/1‑91 (MQ=255) cATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACGTCGCTtttattat > 2:1402364/1‑91 (MQ=255) cATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattat < 1:3110612/91‑1 (MQ=255) cATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattat < 1:2857464/91‑1 (MQ=255) cATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattat < 2:3773046/91‑1 (MQ=255) cATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattat > 2:948288/1‑91 (MQ=255) attagtacatatctaggcctatatacttttaataaataatAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattat > 1:1054038‑M1/41‑91 (MQ=255) attagtacatatctaggcctatatacttttaataaataatAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattat > 1:1379263‑M1/41‑91 (MQ=255) aaTTTCACTTTCTGCTCAATTTATTGTTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattat < 1:1149900/90‑1 (MQ=255) ttagtacatatctaggcctatatacttttaataaataatAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattatt > 1:494397‑M1/40‑91 (MQ=255) aTTTCTCTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattatt < 2:3568729/91‑1 (MQ=255) aTTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattatt < 2:1575791/91‑1 (MQ=255) tttCACTTTCTGCTCAATTTATTATTAGACTACATACAAAAAGCGATGCCTCACCTCTCGACACAGGCGTGTTACATCACTtttattactt > 2:1994674/1‑91 (MQ=255) tagtacatatctaggcctatatacttttaataaataatAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattattt > 1:1258965‑M1/39‑91 (MQ=255) acatatctaggcctatatacttttaataaataatAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattatttatta > 2:3643028‑M1/35‑91 (MQ=255) tttCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTaaa < 2:2215368/91‑1 (MQ=255) ttCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTaaaa < 1:720583/91‑1 (MQ=255) tCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAg > 2:2687200/1‑91 (MQ=255) tCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAg < 2:1808321/91‑1 (MQ=255) cTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGt > 1:797264/1‑91 (MQ=255) tGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGta < 1:972738/91‑1 (MQ=255) cTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGtatt > 2:1538137/1‑90 (MQ=255) tCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGtatat < 2:2090451/91‑1 (MQ=255) aTTTATTATTAGTTTACGTACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAgg < 2:1131976/91‑1 (MQ=255) aTTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAgg > 1:1825215/1‑91 (MQ=255) tttATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGc < 1:3172373/91‑1 (MQ=255) tatacttttaataaataatAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCt > 1:3704730‑M1/20‑91 (MQ=255) attattaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTa > 1:3460647/1‑91 (MQ=255) attattaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTa < 2:340081/91‑1 (MQ=255) attattaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTa < 2:3312431/91‑1 (MQ=255) ttattaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAg > 2:3138649/1‑91 (MQ=255) ttattaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAg < 2:1289592/91‑1 (MQ=255) attaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGat < 1:419024/91‑1 (MQ=255) attaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGat < 2:2262814/91‑1 (MQ=255) taGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGttat > 2:3432173/1‑91 (MQ=255) tttACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTa < 1:2502268/91‑1 (MQ=255) ttACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTAc < 2:1607575/91‑1 (MQ=255) catacaAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTaa > 1:814241/1‑91 (MQ=255) catacaAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTaa < 1:1228126/91‑1 (MQ=255) acaAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGCCTATAGGCCTAGATATGTACTAAttc > 1:3624574/1‑91 (MQ=255) caAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTAcatcgctttttgtatgtaaactaataataaattgagcagaaagtgaaatgatt < 1:2590665‑M2/91‑54 (MQ=255) aaaaaGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAAttctt > 1:2011570/1‑91 (MQ=255) AGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCttt < 2:3683069‑M1/91‑1 (MQ=255) gCGATGCCTCACCTCTCGAAACAGGTGTGTTAcatcgctttttgtatgtaaactaataataaattgagcagaaagtgaaatgattaatgaa < 1:2030152‑M2/91‑60 (MQ=255) gCGATGCCTCACCTCTCGAAACAGGTGTGTTAcatcgctttttgtatgtaaactaataataaattgagcagaaagtgaaatgattaatgaa < 1:2030597‑M2/91‑60 (MQ=255) GCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTa > 1:152878‑M1/1‑91 (MQ=255) GCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTa > 1:1123436‑M1/1‑91 (MQ=255) GCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTa < 1:2280350‑M1/91‑1 (MQ=255) GCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTa < 2:1677780‑M1/91‑1 (MQ=255) cGATGCCTCACCTCTCGAAACAGGTGTGTTAcatcgctttttgtatgtaaactaataataaattgagcagaaagtgaaatgattaatgaat < 1:3658843‑M2/91‑61 (MQ=255) CGATGCCTCACCTCTCGAACCAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAg < 2:3394392‑M1/91‑1 (MQ=255) gATGCCTCACCTCTCGAAACAGGTGTGTTAcatcgctttttgtatgtaaactaataataaattgagcagaaagtgaaatgattaatgaatt < 1:1623101‑M2/91‑62 (MQ=255) GATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGc < 2:1630246‑M1/91‑1 (MQ=255) GATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGc < 1:524219‑M1/91‑1 (MQ=255) GATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGc < 1:1429635‑M1/91‑1 (MQ=255) GATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGc < 1:197485‑M1/91‑1 (MQ=255) GATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGc < 2:2617103‑M1/91‑1 (MQ=255) GATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGc < 1:2112893‑M1/91‑1 (MQ=255) aTGCCTCACCTCTCGAAACAGGTGTGTTAcatcgctttttgtatgtaaactaataataaattgagcagaaagtgaaatgattaatgaatta < 2:3523953‑M2/91‑63 (MQ=255) ATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCa < 2:1224203‑M1/91‑1 (MQ=255) tGCCTCACCTCTCGAAACAGGTGTGTTAcatcgctttttgtatgtaaactcataataaattgagcagaaagtgaaatgattaatgaattaa < 2:905170‑M2/91‑64 (MQ=255) GCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAtt > 1:3808015‑M1/1‑91 (MQ=255) GCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAtt < 1:3586329‑M1/91‑1 (MQ=255) GCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAtt > 2:3149957‑M1/1‑91 (MQ=255) ccTCACCTCTCGAAACAGGTGTGTTAcatcgctttttgtatgtaaactaataataaattgagcagaaagtgaaatgattaatgaattaaaa < 1:259629‑M2/91‑66 (MQ=255) ccTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAttt < 2:2881691/91‑1 (MQ=255) ccTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAttt > 2:3251252/1‑91 (MQ=255) cACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTg < 1:666215/91‑1 (MQ=255) aCCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGt < 1:2380542/91‑1 (MQ=255) ctctCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTa > 2:1014767/1‑91 (MQ=255) cGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGt > 2:96852/1‑91 (MQ=255) cGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGt < 2:2440541/91‑1 (MQ=255) cGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGt < 2:2440432/91‑1 (MQ=255) aaCAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATg > 2:385356/1‑91 (MQ=255) aaCAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATg < 1:2232409/91‑1 (MQ=255) cAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTGGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGtt > 1:2652/1‑91 (MQ=255) ggTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTc > 1:1041247/1‑91 (MQ=255) gtgtgtTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCa > 2:2728665/1‑91 (MQ=255) tgtgtTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAg < 1:842404/91‑1 (MQ=255) gtgtTACCTCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATACGTACTAATTCTTCTTTAGACTTTCTGTTCAAGTATGTTTCAGc > 2:3607034/1‑91 (MQ=255) gtgtTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGc > 1:2070961/1‑91 (MQ=255) ttACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTtc < 1:3221843/91‑1 (MQ=255) ttACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTtc < 1:1427374/91‑1 (MQ=255) aCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTtctc < 2:2333987/91‑1 (MQ=255) aCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTtctc > 1:2618737/1‑91 (MQ=255) | TTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTC > USA300TCH1516_ALE/1980812‑1980992 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |