BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2014149	193 (1.010)	15 (0.090)	11/148	NT	7.5%	intergenic (+49/+212)	USA300HOU_RS10140/USA300HOU_RS10150	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 2014182	192 (1.090)	15 (0.090)	11/148	NT	7.5%	intergenic (+82/+179)	USA300HOU_RS10140/USA300HOU_RS10150	hypothetical protein/hypothetical protein

Only 100 of 252 total aligned reads displayed.

GCTAAATAATTTCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCTTTAATGACTCGAAATATC  >  USA300TCH1516_ALE/2014092‑2014272

gCTAAATAATTTCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGt                                                                                            <  1:3384517/91‑1 (MQ=255)

gCTAAATAATTTCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGt                                                                                            >  1:1544003/1‑91 (MQ=255)

gCTAAATAATTTCAAGGTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGt                                                                                            <  2:3708543/91‑1 (MQ=255)

 cTAAATAATTTCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTc                                                                                           >  1:666736‑M2/1‑90 (MQ=255)

 cTAAATAATTTCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTc                                                                                           >  2:2168470‑M2/1‑90 (MQ=255)

    aataatTTCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTccgg                                                                                        >  1:2673152‑M2/1‑87 (MQ=255)

    aataatTTCAAGTTATTATTCACTAAAGGTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTccgg                                                                                        >  2:1480953‑M2/1‑87 (MQ=255)

        ctttCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGtttt                                                                                    <  2:3854609/90‑1 (MQ=255)

         tttCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGttttt                                                                                   >  2:2526479/1‑91 (MQ=255)

         tttCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGttttt                                                                                   >  2:252330/1‑91 (MQ=255)

          ttCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGtttttt                                                                                  >  2:3183559/1‑91 (MQ=255)

           tCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTa                                                                                 >  1:252927/1‑91 (MQ=255)

           tCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTa                                                                                 <  1:1113591/91‑1 (MQ=255)

            cAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTaa                                                                                >  2:1197627/1‑91 (MQ=255)

            cAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTaa                                                                                >  2:729855/1‑91 (MQ=255)

              aGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATg                                                                              <  2:2668455/91‑1 (MQ=255)

              aGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATg                                                                              <  2:946085/91‑1 (MQ=255)

                ttattaTTCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTa                                                                            >  1:2809554/1‑91 (MQ=255)

                  attattCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTaaa                                                                          >  1:1863636/1‑91 (MQ=255)

                   ttattCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTaaaa                                                                         >  1:2644345/1‑91 (MQ=255)

                     attCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACt                                                                       >  2:505874/1‑91 (MQ=255)

                     attCACTAAAGTTAATCTATAAAAAATGAACAACCGGACAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACt                                                                       >  1:3265040/1‑91 (MQ=255)

                      ttCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTa                                                                      <  2:1324844/91‑1 (MQ=255)

                       tCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTAt                                                                     <  1:2707077/91‑1 (MQ=255)

                            aaaGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATg                                                                <  2:556586/91‑1 (MQ=255)

                             aaGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGc                                                               <  2:3471530/91‑1 (MQ=255)

                             aaGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGc                                                               >  1:1685813/1‑91 (MQ=255)

                              aGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCt                                                              >  1:2540327/1‑91 (MQ=255)

                               gTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAGCGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCtt                                                             <  1:3076188/91‑1 (MQ=255)

                                ttAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCttt                                                            <  1:3106584/91‑1 (MQ=255)

                                 tAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCtttt                                                           >  2:3670616/1‑91 (MQ=255)

                                 tAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCtttt                                                           >  2:3670553/1‑91 (MQ=255)

                                  aaTCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTa                                                          >  1:867649/1‑91 (MQ=255)

                                  aaTCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTa                                                          >  2:2727890/1‑91 (MQ=255)

                                   aTCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTAc                                                         <  1:3456658/91‑1 (MQ=255)

                                   aTCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTAc                                                         >  1:2154734/1‑91 (MQ=255)

                                    tCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACa                                                        <  1:3244300/91‑1 (MQ=255)

                                    tCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACa                                                        >  2:1593308/1‑91 (MQ=255)

                                        taAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAAt                                                    >  2:1686000/1‑91 (MQ=255)

                                        taAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAAt                                                    <  1:3829229/91‑1 (MQ=255)

                                        taAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTATTACAAAAt                                                    <  1:1945166/91‑1 (MQ=255)

                                        taAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTCTTTTAATGTAAAACTATGAATGCTTTTACAAAAt                                                    >  2:3769586/1‑91 (MQ=255)

                                         aaaaaaTGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATc                                                   >  2:3388805/1‑91 (MQ=255)

                                           aaaaTGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTa                                                 >  1:496273/1‑91 (MQ=255)

                                               tGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAAt                                             >  1:1999310/1‑91 (MQ=255)

                                               tGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAAt                                             >  2:1911214/1‑91 (MQ=255)

                                               tGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAAt                                             <  2:2193969/91‑1 (MQ=255)

                                                gAACAAACGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAAtt                                            >  1:3024016/1‑91 (MQ=255)

                                                 aacaacCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAAttt                                           >  1:1003644/1‑91 (MQ=255)

                                                 aacaacCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAAttt                                           >  2:199727/1‑91 (MQ=255)

                                                 aacaacCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAAttt                                           >  2:2024465/1‑91 (MQ=255)

                                                 aacaacCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAAttt                                           >  2:3351985/1‑91 (MQ=255)

                                                 aacaacCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAAttt                                           <  1:1212593/91‑1 (MQ=255)

                                                  acaacCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTta                                          >  1:2854117/1‑91 (MQ=255)

                                                   caacCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTccggttgttcattttttatagattaactttagtgaataataacttgaaatt                                         <  1:2911706‑M2/91‑52 (MQ=255)

                                                   caacCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTtat                                         <  1:2488653/91‑1 (MQ=255)

                                                    aacCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTtata                                        >  1:1881672/1‑91 (MQ=255)

                                                     acCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTccggttgttcattttttatagattaactttagtgaataataacttgaaattat                                       <  1:1345221‑M2/91‑54 (MQ=255)

                                                     acCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTatat                                       >  2:3656448/1‑91 (MQ=255)

                                                      ccGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTccggttgttcattttttatagattaactttagtgaataataacttgaaattatt                                      <  1:1658635‑M2/91‑55 (MQ=255)

                                                      ccGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATAtt                                      >  2:1967239/1‑91 (MQ=255)

                                                         ggCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATAttgtt                                   >  1:297420/1‑91 (MQ=255)

                                                         ggCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATAttgtt                                   <  1:3670616/91‑1 (MQ=255)

                                                         ggCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATAttgtt                                   <  1:3670553/91‑1 (MQ=255)

                                                           cAGAATGAAAATCAAAACGATTTTTACTCTGTccggttgtgcattttttatagattaactttagtgaataataacttgaaattatttagca                                 <  2:3186664‑M2/91‑60 (MQ=255)

                                                           cAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGc                                 <  2:2644345/91‑1 (MQ=255)

                                                           cAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGc                                 >  2:2537155/1‑91 (MQ=255)

                                                             gAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAAGGCTTTTACAAAATCTAAAATTTATATTGTTGCTa                               <  2:787472/91‑1 (MQ=255)

                                                               aTGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAAc                             >  2:1226059/1‑91 (MQ=255)

                                                               aTGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAAc                             >  2:464160/1‑91 (MQ=255)

                                                               aTGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAAc                             >  1:433176/1‑91 (MQ=255)

                                                                tGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACa                            <  1:2526478/91‑1 (MQ=255)

                                                                tGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACa                            <  2:1438987/91‑1 (MQ=255)

                                                                tGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACa                            <  1:2757231/91‑1 (MQ=255)

                                                                  aaaaTCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACaaa                          <  2:1094721/91‑1 (MQ=255)

                                                                  aaaaTCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACaaa                          <  2:1859101/91‑1 (MQ=255)

                                                                  aaaaTCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACaaa                          >  1:3810254/1‑91 (MQ=255)

                                                                  aaaaTCAAAACGATTTTTACTCTGTACGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACaaa                          <  1:3606173/91‑1 (MQ=255)

                                                                   aaaTCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAAc                         >  2:2803770/1‑91 (MQ=255)

                                                                   aaaTCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAAc                         >  1:3559683/1‑91 (MQ=255)

                                                                    aaTCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACt                        <  2:1874758/91‑1 (MQ=255)

                                                                       cAAAACGATTTTTACTCTGTccggttgttcattttttatagattaactttagtgaataataacttgaaattatttagcacacagtttacgt                     <  1:3514262‑M2/91‑72 (MQ=255)

                                                                       cAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTAcc                     >  1:330283/1‑91 (MQ=255)

                                                                        aaaaCGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCt                    <  1:793214/91‑1 (MQ=255)

                                                                           aCGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCTTTa                 <  2:2943726/91‑1 (MQ=255)

                                                                           aCGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCTTTa                 >  2:2066815/1‑91 (MQ=255)

                                                                           aCGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCTTTa                 >  1:95245/1‑91 (MQ=255)

                                                                             gATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCTTTAAt               >  2:3553696/1‑91 (MQ=255)

                                                                             gATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCTTTAAt               <  2:2223297/91‑1 (MQ=255)

                                                                              aTTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCTTTAATg              <  1:1761746/91‑1 (MQ=255)

                                                                               tttttACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCTTTAATGa             >  1:2261439/1‑91 (MQ=255)

                                                                                ttttACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCTTTAATGAc            <  1:720597/91‑1 (MQ=255)

                                                                                ttttACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCTTTAATGAc            <  2:1786350/91‑1 (MQ=255)

                                                                                 tttACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCTTTAATGACt           >  2:3285631/1‑91 (MQ=255)

                                                                                  ttACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCTTTAATGACTc          <  1:1789469/91‑1 (MQ=255)

                                                                                   tACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCTTTAATGACTCg         >  2:1708337/1‑91 (MQ=255)

                                                                                   tACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCTTTAATGACTCg         <  1:146963/91‑1 (MQ=255)

                                                                                       ctGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCTTTAATGACTCGAAat     <  2:2128840/91‑1 (MQ=255)

                                                                                        tGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCTTTAATGACTCGAAata    <  2:1286109/91‑1 (MQ=255)

                                                                                        tGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCTTTAATGACTCGAAata    <  2:28289/91‑1 (MQ=255)

GCTAAATAATTTCAAGTTATTATTCACTAAAGTTAATCTATAAAAAATGAACAACCGGGCAGAATGAAAATCAAAACGATTTTTACTCTGTCCGGTTTTTTAATGTAAAACTATGAATGCTTTTACAAAATCTAAAATTTATATTGTTGCTAACAAACTACCTTTAATGACTCGAAATATC  >  USA300TCH1516_ALE/2014092‑2014272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.